Revision 28fa8ecbda12b520d1570fd3f6988ea156fc962b authored by Duncan Brown on 27 September 2015, 12:25:14 UTC, committed by Duncan Brown on 27 September 2015, 12:25:14 UTC
Fix for case where workflow doesn't have a psd section
2 parent s c790a8a + 2768ea8
Raw File
pycbc_upload_xml_to_gracedb
#!/usr/bin/env python

# Copyright (C) 2015 Ian Harry
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.

"""
Take a coinc xml file containing multiple events and upload to gracedb.
"""

import os, json
import argparse
import logging
from ligo.gracedb.rest import GraceDb

from glue.ligolw import ligolw
from glue.ligolw import table
from glue.ligolw import lsctables
from glue.ligolw import ilwd
from glue.ligolw import utils as ligolw_utils
from glue.ligolw.utils import process as ligolw_process

class LIGOLWContentHandler(ligolw.LIGOLWContentHandler):
    pass

logging.basicConfig(format='%(asctime)s:%(levelname)s : %(message)s',
                    level=logging.INFO)

parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument('--input-file', dest='input_file',
                    required=True, type=str,
                    help='Input LIGOLW XML file of coincidences.')
parser.add_argument('--testing', action="store_true", default=False,
                    help="Upload event to the TEST group of gracedb.")
args = parser.parse_args()

gracedb = GraceDb()

lsctables.use_in(LIGOLWContentHandler)

xmldoc = ligolw_utils.load_filename(args.input_file,
                             contenthandler=LIGOLWContentHandler)

coinc_table = table.get_table(xmldoc, lsctables.CoincTable.tableName)
coinc_inspiral_table = table.get_table(xmldoc,
                                       lsctables.CoincInspiralTable.tableName)
coinc_event_map_table = table.get_table(xmldoc,
                                        lsctables.CoincMapTable.tableName)

sngl_inspiral_table = table.get_table(xmldoc,
                                      lsctables.SnglInspiralTable.tableName)

xmldoc.childNodes[-1].removeChild(sngl_inspiral_table)
xmldoc.childNodes[-1].removeChild(coinc_event_map_table)
xmldoc.childNodes[-1].removeChild(coinc_inspiral_table)
xmldoc.childNodes[-1].removeChild(coinc_table)

for event in coinc_table:
    coinc_event_table_curr = lsctables.New(lsctables.CoincTable)
    coinc_event_table_curr.append(event)
    coinc_inspiral_table_curr = lsctables.New(lsctables.CoincInspiralTable)
    coinc_event_map_table_curr = lsctables.New(lsctables.CoincMapTable)
    sngl_inspiral_table_curr = lsctables.New(lsctables.SnglInspiralTable)

    coinc_event_id = event.coinc_event_id
    for coinc_insp in coinc_inspiral_table:
        if coinc_insp.coinc_event_id == event.coinc_event_id:
            coinc_inspiral_table_curr.append(coinc_insp)

    sngl_ids = []
    for coinc_map in coinc_event_map_table:
        if coinc_map.coinc_event_id == event.coinc_event_id:
            coinc_event_map_table_curr.append(coinc_map)
            sngl_ids.append(coinc_map.event_id)

    for sngl in sngl_inspiral_table:
        if sngl.event_id in sngl_ids:
            sngl_inspiral_table_curr.append(sngl)

    xmldoc.childNodes[-1].appendChild(coinc_event_table_curr)
    xmldoc.childNodes[-1].appendChild(coinc_inspiral_table_curr)
    xmldoc.childNodes[-1].appendChild(coinc_event_map_table_curr)
    xmldoc.childNodes[-1].appendChild(sngl_inspiral_table_curr)
    ligolw_utils.write_filename(xmldoc, "tmp_coinc_xml_file.xml")
    if args.testing:
        r = gracedb.createEvent("Test", "pycbc", "tmp_coinc_xml_file.xml",
                                "AllSky").json()
    else:
        r = gracedb.createEvent("CBC", "pycbc", "tmp_coinc_xml_file.xml",
                                "AllSky").json()
    logging.info("Uploaded event %s." %(r["graceid"]))
    xmldoc.childNodes[-1].removeChild(coinc_event_table_curr)
    xmldoc.childNodes[-1].removeChild(coinc_inspiral_table_curr)
    xmldoc.childNodes[-1].removeChild(coinc_event_map_table_curr)
    xmldoc.childNodes[-1].removeChild(sngl_inspiral_table_curr)
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