Revision 29924bda42d17dfbebb4e630ac62c6e7b142b42b authored by Rybakov on 23 July 2020, 12:55:11 UTC, committed by Sergei Rybakov on 29 July 2020, 22:04:05 UTC
1 parent aefd687
setup.py
import sys
if sys.version_info < (3, 6):
sys.exit('scanpy requires Python >= 3.6')
from pathlib import Path
from setuptools import setup, find_packages
try:
from scanpy import __author__, __email__
except ImportError: # Deps not yet installed
__author__ = __email__ = ''
setup(
name='scanpy',
use_scm_version=True,
setup_requires=['setuptools_scm'],
description='Single-Cell Analysis in Python.',
long_description=Path('README.rst').read_text('utf-8'),
url='http://github.com/theislab/scanpy',
author=__author__,
author_email=__email__,
license='BSD',
python_requires='>=3.6',
install_requires=[
l.strip() for l in Path('requirements.txt').read_text('utf-8').splitlines()
],
extras_require=dict(
louvain=['python-igraph', 'louvain>=0.6,!=0.6.2'],
leiden=['python-igraph', 'leidenalg'],
bbknn=['bbknn'],
scvi=['scvi>=0.6.5'],
rapids=['cudf>=0.9', 'cuml>=0.9', 'cugraph>=0.9'],
magic=['magic-impute>=2.0'],
skmisc=["scikit-misc>=0.1.3"],
harmony=['harmonypy'],
doc=[
'sphinx',
'sphinx_rtd_theme',
'sphinx_autodoc_typehints',
'scanpydoc>=0.4.3',
'typing_extensions; python_version < "3.8"', # for `Literal`
],
test=[
'pytest>=4.4',
'dask[array]!=2.17.0',
'fsspec',
'zappy',
'zarr',
'black',
'profimp',
],
),
packages=find_packages(),
include_package_data=True,
entry_points=dict(console_scripts=['scanpy=scanpy.cli:console_main']),
zip_safe=False,
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Framework :: Jupyter',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'Natural Language :: English',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX :: Linux',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Visualization',
],
)
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