https://github.com/connor-lab/ncov2019-artic-nf
Revision 2a9b6d9da2a66bfa47b854d145dfa7b0cf4de3a9 authored by Matt Bull on 01 April 2020, 07:23:40 UTC, committed by GitHub on 01 April 2020, 07:23:40 UTC
Fixes #5 Good catch, thanks.
Tip revision: 2a9b6d9da2a66bfa47b854d145dfa7b0cf4de3a9 authored by Matt Bull on 01 April 2020, 07:23:40 UTC
Merge pull request #6 from embatty/master
Merge pull request #6 from embatty/master
Tip revision: 2a9b6d9
environment-medaka.yml
name: fieldbioinformatics-medaka
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bcftools=1.9
- biopython=1.76
- bwa=0.7.17=pl5.22.0_2
- clint=0.5.1=py36_0
- longshot=0.4.1
- medaka=0.11.5
- minimap2=2.17
- nomkl
- openblas==0.3.3
- pandas=0.23.0=py36_1
- pip
- pysam=0.15.3
- pytest
- python=3.6
- pyvcf=0.6.8
- samtools=1.9
- pip:
- git+https://github.com/artic-network/Porechop.git@v0.3.2pre
- git+https://github.com/artic-network/fieldbioinformatics.git
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