https://github.com/CampagneLaboratory/goby
Revision 2b2c9cd4c181dafaf785bf5533c375c476217a3e authored by Kevin C. Dorf on 31 May 2012, 18:14:51 UTC, committed by Kevin C. Dorf on 31 May 2012, 18:14:51 UTC
* Fix an issue related to when using predefined quals are kept in spliced reads with compact-to-sam. * Option to preserve reads names when going sam-to-compact. If they are kept in the compact file, they will be written to the compact-to-sam file, as well * Make test comparison and SamComparisonMode friendlier with sam/cram files where both expected and actual might contain unmapped reads * Improve the scoring system in SamComparison so some options are weighted more than others on a comparison failure * SamPerPositionComparison is now smarter since it can use readNames to determine with items pair up at a position git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby@32127 60cd2ccc-2b05-0410-9566-da273a940bff
1 parent 39b0400
Tip revision: 2b2c9cd4c181dafaf785bf5533c375c476217a3e authored by Kevin C. Dorf on 31 May 2012, 18:14:51 UTC
* Always save samflags when converting sam-to-compact
* Always save samflags when converting sam-to-compact
Tip revision: 2b2c9cd
| File | Mode | Size |
|---|---|---|
| config | ||
| cpp | ||
| data | ||
| lib | ||
| protobuf | ||
| python | ||
| scripts | ||
| src | ||
| test-data | ||
| test-src | ||
| CHANGES.txt | -rw-r--r-- | 57.2 KB |
| COPYING | -rw-r--r-- | 431 bytes |
| GPL3.license | -rw-r--r-- | 34.3 KB |
| LGPL3.license | -rw-r--r-- | 7.5 KB |
| README-Goby.txt | -rw-r--r-- | 74 bytes |
| README.md | -rw-r--r-- | 1.5 KB |
| build.xml | -rw-r--r-- | 20.8 KB |
| goby | -rw-r--r-- | 1.3 KB |
| goby.iml | -rw-r--r-- | 11.4 KB |
| goby.ipr | -rw-r--r-- | 123.7 KB |
| nightly.xml | -rw-r--r-- | 18.7 KB |
| overview.html | -rw-r--r-- | 2.9 KB |
| release.xml | -rw-r--r-- | 9.6 KB |
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