| 2cab4c7 | cfrioux | 22 April 2020, 08:42:56 UTC | add install or req in GA publish | 22 April 2020, 08:42:56 UTC |
| d495d61 | cfrioux | 22 April 2020, 08:25:36 UTC | update doc and update to 1.2.0 | 22 April 2020, 08:25:36 UTC |
| ee1bbd1 | cfrioux | 22 April 2020, 07:54:36 UTC | update version | 22 April 2020, 07:54:36 UTC |
| 19d3523 | cfrioux | 22 April 2020, 07:46:50 UTC | typo in doc | 22 April 2020, 07:46:50 UTC |
| f1bccbd | cfrioux | 22 April 2020, 07:39:02 UTC | modify path to req file for conda (doc)c | 22 April 2020, 07:39:02 UTC |
| 07f1256 | cfrioux | 22 April 2020, 07:24:57 UTC | add req file dep to conda for doc | 22 April 2020, 07:24:57 UTC |
| e33ef13 | cfrioux | 22 April 2020, 07:21:35 UTC | add one conda dep | 22 April 2020, 07:21:35 UTC |
| 2e596d9 | cfrioux | 22 April 2020, 07:13:06 UTC | add pip dep | 22 April 2020, 07:13:06 UTC |
| 09e53a1 | cfrioux | 22 April 2020, 06:50:36 UTC | add reqs in env from docs | 22 April 2020, 06:50:36 UTC |
| 7e8e3da | cfrioux | 22 April 2020, 06:46:22 UTC | attempt to fix build issues with rtd | 22 April 2020, 06:46:22 UTC |
| d472a16 | cfrioux | 22 April 2020, 06:42:52 UTC | Merge branch 'master' of https://github.com/AuReMe/metage2metabo | 22 April 2020, 06:42:52 UTC |
| c3cda64 | cfrioux | 22 April 2020, 06:35:54 UTC | typo readme, test compil doc | 22 April 2020, 06:35:54 UTC |
| ae9bd8f | Arnaud Belcour | 21 April 2020, 15:22:11 UTC | Remove auto import in setup.py. | 21 April 2020, 15:22:11 UTC |
| 901e232 | Arnaud Belcour | 21 April 2020, 15:17:29 UTC | Roll back after failed test. | 21 April 2020, 15:17:29 UTC |
| a159513 | Arnaud Belcour | 21 April 2020, 15:14:46 UTC | Another try to fix this doc. | 21 April 2020, 15:14:46 UTC |
| 0172ee4 | Arnaud Belcour | 21 April 2020, 15:12:11 UTC | Try to fix readthedocs. | 21 April 2020, 15:12:11 UTC |
| c77c1d9 | cfrioux | 21 April 2020, 14:59:46 UTC | Merge branch 'master' of https://github.com/AuReMe/metage2metabo | 21 April 2020, 14:59:46 UTC |
| 153787a | cfrioux | 21 April 2020, 14:59:36 UTC | add badge with link to paper | 21 April 2020, 14:59:36 UTC |
| 8d45768 | Arnaud Belcour | 21 April 2020, 14:52:36 UTC | Try to fix doc by having metage2metabo in requirements.txt. | 21 April 2020, 14:52:36 UTC |
| 88ab823 | cfrioux | 21 April 2020, 14:49:58 UTC | fix logger and remove the debug tricks, stream logs to stdout | 21 April 2020, 14:49:58 UTC |
| cb5cfc6 | Arnaud Belcour | 21 April 2020, 14:44:47 UTC | Move version into cfg to avoid import in setup.py. | 21 April 2020, 14:44:47 UTC |
| 1a2b24d | Arnaud Belcour | 21 April 2020, 14:31:36 UTC | Try to fix issue with doc by not using conda. | 21 April 2020, 14:31:36 UTC |
| 9b6a3f5 | Arnaud Belcour | 21 April 2020, 14:18:10 UTC | Try to fix issue with dependencies in test. | 21 April 2020, 14:18:10 UTC |
| efcd280 | Arnaud Belcour | 21 April 2020, 14:14:08 UTC | Add test for m2m_analysis to GitHub Actions. | 21 April 2020, 14:14:08 UTC |
| 2fdee42 | Arnaud Belcour | 21 April 2020, 13:47:02 UTC | Replace Travis badge by Actions badge. | 21 April 2020, 13:47:02 UTC |
| aa9702f | Arnaud Belcour | 21 April 2020, 13:35:43 UTC | Replace Travis by GitHub Actions. | 21 April 2020, 13:35:43 UTC |
| 4338ac7 | cfrioux | 21 April 2020, 13:33:53 UTC | fix setup.py | 21 April 2020, 13:33:53 UTC |
| d789139 | cfrioux | 21 April 2020, 13:28:35 UTC | rm m2m from reqs, mv version in init | 21 April 2020, 13:28:35 UTC |
| 86b3e78 | Arnaud Belcour | 21 April 2020, 13:17:10 UTC | Try to fix metacom test. | 21 April 2020, 13:17:10 UTC |
| 811eada | cfrioux | 21 April 2020, 13:12:07 UTC | py3.8 not supported because of padmet dependencies | 21 April 2020, 13:12:07 UTC |
| dc90cf5 | Arnaud Belcour | 21 April 2020, 13:01:05 UTC | Try to fix issue with conda and readthedocs. | 21 April 2020, 13:01:05 UTC |
| 4e9f9e5 | cfrioux | 21 April 2020, 12:57:21 UTC | update biopython dependency for padmet in tests | 21 April 2020, 12:57:21 UTC |
| a69c9ed | cfrioux | 21 April 2020, 12:45:03 UTC | fix doc requirements, add one file for github actions, fix github action test | 21 April 2020, 12:45:03 UTC |
| a872486 | cfrioux | 21 April 2020, 12:28:48 UTC | github action test metacom py 3.6 to 3.8 | 21 April 2020, 12:28:48 UTC |
| 7e0a516 | cfrioux | 21 April 2020, 12:24:11 UTC | update doc, readme, complete requirements | 21 April 2020, 12:24:11 UTC |
| d949dd2 | Clémence Frioux | 21 April 2020, 09:40:25 UTC | Create pythonpublish.yml | 21 April 2020, 09:40:25 UTC |
| c655e33 | cfrioux | 07 April 2020, 06:58:38 UTC | update doc | 07 April 2020, 06:58:38 UTC |
| 3b4379a | cfrioux | 30 March 2020, 06:57:19 UTC | fix loggers and output writting for addedvalue | 30 March 2020, 06:57:19 UTC |
| c349f8f | cfrioux | 30 March 2020, 06:35:54 UTC | create a json file with addedvalue | 30 March 2020, 06:35:54 UTC |
| 6256fc1 | Arnaud Belcour | 23 March 2020, 17:15:00 UTC | Add better traceback for iscope. | 23 March 2020, 17:15:00 UTC |
| e84bdf9 | cfrioux | 23 March 2020, 15:03:21 UTC | beautify json, add link to mpwt doc in tuto | 23 March 2020, 15:03:21 UTC |
| de27bed | Arnaud Belcour | 11 March 2020, 10:54:38 UTC | Remove try and except hiding error messages. | 11 March 2020, 10:54:38 UTC |
| c9c4339 | cfrioux | 06 March 2020, 08:47:26 UTC | relocate file handler creation vs outdir creation | 06 March 2020, 08:47:26 UTC |
| e10c555 | cfrioux | 06 March 2020, 08:22:52 UTC | clean imports and fix typos | 06 March 2020, 08:22:52 UTC |
| 9c32aee | cfrioux | 05 March 2020, 19:49:14 UTC | create file logger in addition to stream stdout | 05 March 2020, 19:49:14 UTC |
| 042a06f | Arnaud Belcour | 04 March 2020, 14:05:02 UTC | Fix metacom tutorial in doc. | 04 March 2020, 14:05:02 UTC |
| 382d493 | Arnaud Belcour | 04 March 2020, 13:29:46 UTC | Fix test after removing -c to addedvalue/mincom/iscope/cscope. | 04 March 2020, 13:29:46 UTC |
| 88518f2 | Arnaud Belcour | 04 March 2020, 13:22:56 UTC | Add metacom to m2m doc. | 04 March 2020, 13:22:56 UTC |
| fa841a3 | Arnaud Belcour | 04 March 2020, 11:02:11 UTC | Add new command metacom. | 04 March 2020, 11:02:11 UTC |
| 6212e5b | Arnaud Belcour | 02 March 2020, 10:58:06 UTC | Create targets.sbml from addedvalue in workflow. | 02 March 2020, 10:58:06 UTC |
| 6cd42b8 | Arnaud Belcour | 28 February 2020, 12:54:57 UTC | Add recon -p to doc. | 28 February 2020, 12:54:57 UTC |
| 66a8785 | Arnaud Belcour | 14 February 2020, 16:25:18 UTC | Add tests for missing padmet/sbml after recon. | 14 February 2020, 16:25:18 UTC |
| d3e6d40 | Arnaud Belcour | 14 February 2020, 14:43:30 UTC | Fix issue introduced in previous commit. If there is no log_error.txt file the log will return an error. | 14 February 2020, 14:43:30 UTC |
| 6a491f5 | Arnaud Belcour | 12 February 2020, 16:34:50 UTC | Fix an issue when there is no reactions in metabolic network. Add log for mpwt and padmet creation. Fix the behaviour of m2m clean. Use the taxon_file.tsv if it is in the genomes folder. | 12 February 2020, 16:34:50 UTC |
| c3fd248 | Arnaud Belcour | 09 January 2020, 15:55:39 UTC | Move to 1.1.6. | 09 January 2020, 15:55:39 UTC |
| 30877ca | Arnaud Belcour | 09 January 2020, 15:48:46 UTC | Fix typos and add arguments from mpwt version 0.5.3. | 09 January 2020, 15:48:46 UTC |
| 2cb9557 | Arnaud Belcour | 07 January 2020, 16:16:39 UTC | Fix typos. | 07 January 2020, 16:16:39 UTC |
| 3e3b176 | Arnaud Belcour | 06 January 2020, 15:46:32 UTC | Add how to mount ptools-local folder for Singularity container. | 06 January 2020, 15:46:32 UTC |
| 32bb89f | Arnaud Belcour | 19 November 2019, 16:15:41 UTC | Move to 1.1.5. | 19 November 2019, 16:15:41 UTC |
| eb7ba8c | Arnaud Belcour | 19 November 2019, 13:24:26 UTC | Add graphviz to Travis dependencies. | 19 November 2019, 13:24:26 UTC |
| 768dceb | Arnaud Belcour | 19 November 2019, 13:19:38 UTC | Add powergrasp to Travis. | 19 November 2019, 13:19:38 UTC |
| 9ca2d78 | Arnaud Belcour | 19 November 2019, 12:58:57 UTC | Add compatibility with padmet 0.4. | 19 November 2019, 12:58:57 UTC |
| 02d92cc | Arnaud Belcour | 29 October 2019, 09:54:52 UTC | Move to 1.1.4. | 29 October 2019, 09:54:52 UTC |
| f156025 | Arnaud Belcour | 28 October 2019, 16:46:02 UTC | Fix issue with malformated seeds SBML. | 28 October 2019, 16:46:02 UTC |
| c7d55a0 | Arnaud Belcour | 28 October 2019, 10:42:43 UTC | Move to 1.1.3. | 28 October 2019, 10:42:43 UTC |
| f0bc717 | cfrioux | 24 October 2019, 15:31:36 UTC | do no try to create sbml file if no added value | 24 October 2019, 15:31:36 UTC |
| d189e05 | Arnaud Belcour | 23 October 2019, 12:34:24 UTC | Update readme with release notes. Add comment to check_oog_jar_file. | 23 October 2019, 12:34:24 UTC |
| 36c46ca | Arnaud Belcour | 22 October 2019, 14:03:36 UTC | Add check for Oog.jar. Add config file for powergrasp. | 22 October 2019, 14:03:36 UTC |
| 644caca | Arnaud Belcour | 21 October 2019, 12:45:40 UTC | Update Readme. Fix issue with miscoto stats file. | 21 October 2019, 12:45:40 UTC |
| 1f1070b | Arnaud Belcour | 21 October 2019, 08:56:11 UTC | Add labels to recipes. | 21 October 2019, 08:56:11 UTC |
| be52713 | Arnaud Belcour | 18 October 2019, 16:53:08 UTC | Move to 1.1.2. | 18 October 2019, 16:53:08 UTC |
| 8b23ed8 | Arnaud Belcour | 18 October 2019, 16:49:29 UTC | Fix issue in recon with mean and sd with one organism. | 18 October 2019, 16:49:29 UTC |
| 5aaa5bd | Arnaud Belcour | 18 October 2019, 16:02:44 UTC | Add missing dependency to travis. | 18 October 2019, 16:02:44 UTC |
| 8144b01 | Arnaud Belcour | 18 October 2019, 15:54:04 UTC | Add test for m2m_analysis (enum and graph). | 18 October 2019, 15:54:04 UTC |
| e19aab0 | Arnaud Belcour | 18 October 2019, 15:20:54 UTC | Add article seeds. | 18 October 2019, 15:20:54 UTC |
| e5b94dc | Arnaud Belcour | 18 October 2019, 14:00:36 UTC | Test sbml conversion. | 18 October 2019, 14:00:36 UTC |
| ee8bc2c | Arnaud Belcour | 18 October 2019, 13:14:46 UTC | Update readthedocs according to change in recipes. | 18 October 2019, 13:14:46 UTC |
| a5decf1 | Arnaud Belcour | 18 October 2019, 13:00:53 UTC | Update recipes (Songularity, Docker) with m2m_analysis. Update requirements. | 18 October 2019, 13:00:53 UTC |
| 139f3b1 | Clémence Frioux | 18 October 2019, 07:52:03 UTC | relax requirement constraints for padmet-utils, miscoto and menetools | 18 October 2019, 07:52:03 UTC |
| 1815422 | Arnaud Belcour | 17 October 2019, 15:07:10 UTC | Move to version 1.1.1. | 17 October 2019, 15:07:10 UTC |
| 2606693 | Arnaud Belcour | 17 October 2019, 13:29:18 UTC | Fix m2m_analysis readthedocs. Add log to m2m_analysis. Fix numerous issues with m2m_analysis. Add keystone species to m2m log. | 17 October 2019, 13:29:18 UTC |
| 1392498 | Arnaud Belcour | 16 October 2019, 16:25:16 UTC | Merge pull request #6 from AuReMe/m2m_analysis Add m2m_analysis | 16 October 2019, 16:25:16 UTC |
| aa58776 | Arnaud Belcour | 16 October 2019, 15:58:23 UTC | Add m2m_analysis in readthedocs. Remove lp intermediate files. Fix issue with phylum species. Move to version 1.1.0. | 16 October 2019, 15:58:23 UTC |
| 30aa3e2 | Arnaud Belcour | 16 October 2019, 09:39:12 UTC | Add comments in m2m_analysis. | 16 October 2019, 09:39:12 UTC |
| 86d8a56 | Arnaud Belcour | 16 October 2019, 09:07:56 UTC | Update Readme and requirements. | 16 October 2019, 09:07:56 UTC |
| 996f65c | Arnaud Belcour | 15 October 2019, 09:48:39 UTC | Update to_json miscoto function name. | 15 October 2019, 09:48:39 UTC |
| b1d24d6 | Arnaud Belcour | 14 October 2019, 07:49:23 UTC | Fix issue with mincom results. | 14 October 2019, 07:49:23 UTC |
| 26086d6 | Arnaud Belcour | 10 October 2019, 15:34:29 UTC | Fix indentation in m2m_analysis. | 10 October 2019, 15:34:29 UTC |
| 86bc247 | Arnaud Belcour | 09 October 2019, 14:57:15 UTC | Fix stats_analysis, graph_analysis and powergraph_analysis. | 09 October 2019, 14:57:15 UTC |
| aeb297f | Arnaud Belcour | 09 October 2019, 12:10:25 UTC | Fix stats_analysis. | 09 October 2019, 12:10:25 UTC |
| 3b0d6e8 | Arnaud Belcour | 09 October 2019, 11:40:05 UTC | Update m2m_analysis according to new main. | 09 October 2019, 11:40:05 UTC |
| 63c7046 | Arnaud Belcour | 08 October 2019, 15:19:11 UTC | Rewrite m2m_analysis.py according to the new main. | 08 October 2019, 15:19:11 UTC |
| 6aec90e | Arnaud Belcour | 08 October 2019, 15:16:55 UTC | Add main for m2m_analysis. | 08 October 2019, 15:16:55 UTC |
| 3ba7312 | Arnaud Belcour | 07 October 2019, 15:53:01 UTC | Add stats on key species and symbionts. | 07 October 2019, 15:53:01 UTC |
| 62b9258 | Arnaud Belcour | 02 October 2019, 15:14:40 UTC | Modify reactions with associated genes percentages. | 02 October 2019, 15:14:40 UTC |
| 305351d | Arnaud Belcour | 02 October 2019, 13:53:48 UTC | Add reactions associated with genes in sbml stats. | 02 October 2019, 13:53:48 UTC |
| c478a01 | Arnaud Belcour | 01 October 2019, 16:16:01 UTC | Add stats for GSMN. | 01 October 2019, 16:16:01 UTC |
| 7ba0e22 | Arnaud Belcour | 19 September 2019, 10:48:52 UTC | Update dependencies for m2m_analysis. | 19 September 2019, 10:48:52 UTC |
| 9087b7d | Arnaud Belcour | 16 September 2019, 16:59:18 UTC | Add draft for m2m_analysis. | 16 September 2019, 16:59:18 UTC |
| e5205e2 | Arnaud Belcour | 12 September 2019, 15:42:13 UTC | Fix the previous fix. | 12 September 2019, 15:42:13 UTC |
