2d20330 | Tadgh | 09 August 2021, 20:20:46 UTC | Remove changelog as it will eventually create a duplicate | 09 August 2021, 20:20:46 UTC |
966e451 | Tadgh | 09 August 2021, 20:19:38 UTC | Backport fix | 09 August 2021, 20:19:38 UTC |
1df270c | michaelabuckley | 04 August 2021, 20:41:07 UTC | Merge pull request #2864 from hapifhir/mb-20210804-ioob-pick-to-release Pick d85a4e5ec24a27646b86487414e20ea4d36641f4 for release branch | 04 August 2021, 20:41:07 UTC |
e8e49f3 | Michael Buckley | 04 August 2021, 20:34:48 UTC | Pick d85a4e5ec24a27646b86487414e20ea4d36641f4 for release branch | 04 August 2021, 20:34:48 UTC |
66e1f10 | jmarchionatto | 03 August 2021, 20:55:49 UTC | Merge pull request #2821 from hapifhir/issue-2786-upload-terminology-command-add-explicit-current-version-control Issue 2786 upload terminology command add explicit current version control | 03 August 2021, 20:55:49 UTC |
cb68c59 | juan.marchionatto | 03 August 2021, 19:39:02 UTC | Remove validation in code which will never reached for the conditions. | 03 August 2021, 19:39:02 UTC |
45549d2 | juan.marchionatto | 03 August 2021, 18:11:14 UTC | Fix broken ITs. Add error message for non-snapshot upload with current version = false combination. | 03 August 2021, 18:11:14 UTC |
1ff1954 | juan.marchionatto | 30 July 2021, 15:20:23 UTC | Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control | 30 July 2021, 15:20:23 UTC |
4e8b171 | juan.marchionatto | 30 July 2021, 14:48:10 UTC | Add test for fixed use case | 30 July 2021, 14:48:10 UTC |
f5dfc3a | Ken Stevens | 29 July 2021, 23:18:49 UTC | New reindex spring batch operation (#2845) * first sweep to add new $reindex job * first cut done. next up integration test. * start roughing out reindex everything * Failing test * test passes * add BundleUtil helper method * rough in processEverything * rough in processEverything * fix mock test * merge master * Make BaseJpaTest.mySrd lenient. * fix test * reindex everything works with FIXMEs * reindex everything more tests * moar tests * moar tests * fix test * fix test * fix regression and fix test * fix test cycle * fixme * fix test * test provider layer * reindex everything partition aware * yay last fixme! * run reindex in partitioned threads * add fixmes for areas that require extra testing * added transaction and log message * manual integration testing * changelog * reindex all partitions * bump hapi version * fix test * moar test * pre-review cleanup * fix javadoc * review feedback * review feedback * review feedback * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * review feedback * review feedback * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> | 29 July 2021, 23:18:49 UTC |
264dfee | juan.marchionatto | 29 July 2021, 20:21:56 UTC | Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control | 29 July 2021, 20:21:56 UTC |
1fcb36d | juan.marchionatto | 29 July 2021, 19:54:00 UTC | Fix implementation to work also for use case where version is being updated. Use property instead of parameter. | 29 July 2021, 19:54:00 UTC |
1b9761c | Tadgh | 28 July 2021, 14:51:59 UTC | Merge pull request #2840 from hapifhir/issue-2835-cve-jetty bump Jetty for CVEs | 28 July 2021, 14:51:59 UTC |
e076b30 | Tadgh | 27 July 2021, 19:49:00 UTC | bump Jetty for CVEs | 27 July 2021, 19:49:00 UTC |
7c1d87b | Tadgh | 27 July 2021, 15:00:19 UTC | Merge pull request #2834 from hapifhir/issue-2833-commons-compress-cve Bump commons-compress version | 27 July 2021, 15:00:19 UTC |
07cb3ff | Tadgh | 27 July 2021, 13:14:05 UTC | Bump commons-compress version | 27 July 2021, 13:14:05 UTC |
f957661 | James Agnew | 26 July 2021, 18:18:58 UTC | Patient ID Partition Mode should support conditional create (#2828) * Fixes * Test fix * Add changelog * Test fixes * Test fixes * Docs tweak * Partitioning fixes * Import fix * Fix test data | 26 July 2021, 18:18:58 UTC |
6bbb403 | Ken Stevens | 23 July 2021, 23:10:19 UTC | When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources (#2827) * resolved 2826 * fix regression | 23 July 2021, 23:10:19 UTC |
92ec113 | Ken Stevens | 23 July 2021, 20:58:53 UTC | fixed bug (#2824) | 23 July 2021, 20:58:53 UTC |
91bbeba | michaelabuckley | 23 July 2021, 20:50:31 UTC | Merge pull request #2830 from hapifhir/mb-docker-mac-m1-arm Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture. | 23 July 2021, 20:50:31 UTC |
2539f49 | Michael Buckley | 23 July 2021, 19:07:36 UTC | Add detail to changelog | 23 July 2021, 19:07:36 UTC |
d99f94e | Michael Buckley | 23 July 2021, 19:00:48 UTC | changelog | 23 July 2021, 19:00:48 UTC |
0a256fe | Michael Buckley | 23 July 2021, 18:58:10 UTC | Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture. | 23 July 2021, 18:58:10 UTC |
6f7f787 | Ken Stevens | 22 July 2021, 18:07:10 UTC | fixed migration (#2822) | 22 July 2021, 18:07:10 UTC |
ad6f7a2 | juan.marchionatto | 22 July 2021, 14:49:16 UTC | Fix changelog syntax. Merge current master. | 22 July 2021, 14:49:16 UTC |
ae06651 | juan.marchionatto | 22 July 2021, 13:41:16 UTC | Fix syntax. | 22 July 2021, 13:41:16 UTC |
a5e6674 | jamesagnew | 22 July 2021, 12:41:16 UTC | Version bump to 5.5.0-PRE7-SNAPSHOT | 22 July 2021, 12:41:16 UTC |
d78fef6 | James Agnew | 22 July 2021, 12:34:28 UTC | Fix NPE in IdHelperService (#2819) | 22 July 2021, 12:34:28 UTC |
8b8db82 | IanMMarshall | 22 July 2021, 09:17:17 UTC | Enable Package Loader when partitioning is enabled with unnamed partitions (#2808) * Enable Package Loader when partitioning is enabled with unnamed partitions. * Enable Package Loader when partitioning is enabled with unnamed partitions. * Additional package loading problems found with partitioning. * Additional package loading problems found with partitioning. Co-authored-by: ianmarshall <ian@simpatico.ai> | 22 July 2021, 09:17:17 UTC |
6d37749 | James Agnew | 21 July 2021, 23:14:14 UTC | Add non unique combo search params (#2809) * Start work on nonunique combo search params * Work on SQL * Version bump * A fix * Test fixes * Fixes * Undo version bump * Test fixes * Resolve fixme | 21 July 2021, 23:14:14 UTC |
6af0220 | James Agnew | 21 July 2021, 21:21:23 UTC | Fix issue with partitioning in patient ID compartment mode (#2810) * Fix issue with partitioning in patient ID compartment mode * Add changelog | 21 July 2021, 21:21:23 UTC |
e0e52c6 | juan.marchionatto | 21 July 2021, 20:18:35 UTC | Add current-version parameter to upload-terminology command. | 21 July 2021, 20:18:35 UTC |
9f77c57 | jamesagnew | 20 July 2021, 21:30:26 UTC | Widen access for utility methods | 20 July 2021, 21:30:26 UTC |
0ebf274 | michaelabuckley | 20 July 2021, 19:41:05 UTC | Merge pull request #2806 from hapifhir/2805-improve-package-error-messages Add details when we fail to load an element of a package definition. | 20 July 2021, 19:41:05 UTC |
cbb9a43 | Michael Buckley | 19 July 2021, 21:59:54 UTC | Add details when we fail to load an element of a package definition. | 19 July 2021, 21:59:54 UTC |
64f1643 | Frank Tao | 19 July 2021, 18:17:56 UTC | Added LOINC linguistic variants support (#2803) * Added linguistic variants for LOINC uploader * Using static class * Added the changelog | 19 July 2021, 18:17:56 UTC |
946080d | Frank Tao | 16 July 2021, 17:30:42 UTC | Added ConsumerName to the loinc loader. (#2800) * Added ConsumerName to the loinc loader. * Added extra test for coverage * Added the changelog for LOINC CONSUMER NAME support | 16 July 2021, 17:30:42 UTC |
0235296 | James Agnew | 15 July 2021, 18:01:10 UTC | Add support for bulk export of multiple types (#2797) * Add support for bulk export of multiple types * Add changelog | 15 July 2021, 18:01:10 UTC |
5f2a3af | Mad Mirrajabi | 15 July 2021, 18:00:33 UTC | Add Innovattic B.V. to HAPI FHIR Global Atlas (#2798) | 15 July 2021, 18:00:33 UTC |
ddf3df4 | Nick Goupinets | 15 July 2021, 14:38:26 UTC | Merge pull request #2795 from hapifhir/2794_res_links_not_resolved Fixed link resolution | 15 July 2021, 14:38:26 UTC |
ac31000 | Nick Goupinets | 15 July 2021, 13:13:03 UTC | Updated docs | 15 July 2021, 13:13:03 UTC |
520cec1 | Nick Goupinets | 14 July 2021, 15:30:09 UTC | Fixed link resolution | 14 July 2021, 15:30:09 UTC |
744a95a | Tadgh | 14 July 2021, 13:49:33 UTC | Merge pull request #2792 from hapifhir/2791-increase-identifier-length 2791 increase identifier length | 14 July 2021, 13:49:33 UTC |
554685d | Tadgh | 13 July 2021, 20:08:01 UTC | Fix MDM documentation | 13 July 2021, 20:08:01 UTC |
a7e6813 | Tadgh | 13 July 2021, 19:46:47 UTC | Update string length. Add migration | 13 July 2021, 19:46:47 UTC |
0a27b08 | Tadgh | 09 July 2021, 13:35:56 UTC | Merge pull request #2783 from hapifhir/2777-hapi-fhir-cli-Add-option-to-pass-request-headers-to-target-server Add changelog. Address MR comments. | 09 July 2021, 13:35:56 UTC |
b48b188 | jamesagnew | 08 July 2021, 23:19:02 UTC | Add license header | 08 July 2021, 23:19:02 UTC |
218325b | Tadgh | 08 July 2021, 20:25:18 UTC | Add backport info for full diff between 5.4.1 and 5.4.2 (#2784) | 08 July 2021, 20:25:18 UTC |
6d4c2ef | jamesagnew | 08 July 2021, 20:16:08 UTC | Expand access to SqlQuery | 08 July 2021, 20:16:27 UTC |
1e9163c | juan.marchionatto | 08 July 2021, 18:52:19 UTC | Add changelog. Address MR comments. | 08 July 2021, 18:52:19 UTC |
ee1f1fb | jmarchionatto | 07 July 2021, 20:47:28 UTC | Merge pull request #2778 from hapifhir/2777-hapi-fhir-cli-Add-option-to-pass-request-headers-to-target-server Add header-passthrough option to hapi-fhir-cli commands which generate http requests(#2777) | 07 July 2021, 20:47:28 UTC |
95306c3 | James Agnew | 07 July 2021, 20:28:41 UTC | Add NPM validation support module (#2782) * Add NPM validation support module * Add changelog | 07 July 2021, 20:28:41 UTC |
d83cf30 | juan.marchionatto | 07 July 2021, 17:33:33 UTC | Remove double interceptor setup | 07 July 2021, 17:33:33 UTC |
3e7bc2a | Tadgh | 07 July 2021, 14:10:07 UTC | Forward port 5 4 2 (#2781) * Add new version to enum * Add backport tags, new VersionEnum, and new release folder for 5.4.2 | 07 July 2021, 14:10:07 UTC |
41e1b4d | juan.marchionatto | 06 July 2021, 18:37:12 UTC | Register parameter also for child classes overriding addHeaderPassthroughOption | 06 July 2021, 18:37:12 UTC |
5c5bd1e | juan.marchionatto | 06 July 2021, 13:31:53 UTC | Organize imports | 06 July 2021, 13:31:53 UTC |
5f36fe5 | juan.marchionatto | 05 July 2021, 20:08:03 UTC | Add header-passthrough option to hapi-fhir-cli commands which generate http requests. Add class to parent request-generating commands. Allow ValidationResult to be set number of detected errors to inform. | 05 July 2021, 20:08:03 UTC |
d762a07 | James Agnew | 05 July 2021, 13:15:20 UTC | Partition patient interceptor (#2766) * Start work on interceptor * Implemented * Add interceptor and docs * Add docs * Compile fix * Test fixes * Test cleanup * Test fixes * Test fixes * Improve error message * Add broken tests * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2766-add-patient-id-compartment-interceptor.yaml Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/PatientIdPartitionInterceptor.java Co-authored-by: Tadgh <tadgh@cs.toronto.edu> * Address review comments Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Tadgh <tadgh@cs.toronto.edu> | 05 July 2021, 13:15:20 UTC |
6bb5cbf | jamesagnew | 04 July 2021, 19:31:10 UTC | Cleanup logging | 04 July 2021, 19:31:10 UTC |
3bafdd7 | Nick Goupinets | 03 July 2021, 15:19:38 UTC | Merge pull request #2776 from hapifhir/2775_address_interceptor Address interceptor bug | 03 July 2021, 15:19:38 UTC |
7d4c39b | Nick Goupinets | 02 July 2021, 22:18:10 UTC | Fixed bug | 02 July 2021, 22:18:10 UTC |
4bb495e | James Agnew | 02 July 2021, 09:29:49 UTC | Fix NPE (#2774) | 02 July 2021, 09:29:49 UTC |
a4fb729 | Tadgh | 02 July 2021, 03:16:47 UTC | Merge pull request #2767 from hapifhir/2765-mdm-paging Paging implementation for MDM query links operation | 02 July 2021, 03:16:47 UTC |
cfcc939 | Tadgh | 01 July 2021, 22:28:29 UTC | Fix broken tests, add license | 01 July 2021, 22:28:29 UTC |
0a4a50f | Tadgh | 01 July 2021, 21:05:14 UTC | update docs | 01 July 2021, 21:05:14 UTC |
de84e3f | Tadgh | 01 July 2021, 21:02:44 UTC | add test for restfulserverutil link generation | 01 July 2021, 21:02:44 UTC |
b133424 | Ken Stevens | 01 July 2021, 19:17:39 UTC | change out-of-order flag to switch-order flag so the default behaviour reverses (#2773) * change out-of-order flag to switch-order flag so the default behaviour reverses * change log | 01 July 2021, 19:17:39 UTC |
86519a8 | Tadgh | 01 July 2021, 13:43:53 UTC | Add tests for link builder | 01 July 2021, 13:43:53 UTC |
b963520 | Tadgh | 01 July 2021, 13:33:19 UTC | Fix bug in link builder | 01 July 2021, 13:33:19 UTC |
0893ba0 | Tadgh | 01 July 2021, 03:17:04 UTC | Fix up operation param types, fix bug in link builder | 01 July 2021, 03:17:04 UTC |
1eb82d6 | Tadgh | 30 June 2021, 22:41:18 UTC | Rip out pagingprovider requirement | 30 June 2021, 22:41:18 UTC |
950096d | Tadgh | 30 June 2021, 22:21:08 UTC | remove demand for paging provider | 30 June 2021, 22:21:08 UTC |
9f3b262 | Tadgh | 30 June 2021, 21:54:09 UTC | Add alternate caller methods | 30 June 2021, 21:54:09 UTC |
7aba832 | michaelabuckley | 30 June 2021, 20:14:01 UTC | Merge pull request #2771 from hapifhir/issue-2768-convert-mdm-submit-to-spring-batch $mdm-submit operation was only submitting 100 resources ... | 30 June 2021, 20:14:01 UTC |
f66f9b9 | Tadgh | 30 June 2021, 19:37:19 UTC | Bump pre-version as this will break downstream implementations | 30 June 2021, 19:37:19 UTC |
f33696a | Tadgh | 30 June 2021, 19:24:29 UTC | Add changelog | 30 June 2021, 19:24:29 UTC |
d407501 | Tadgh | 30 June 2021, 19:04:05 UTC | More docs | 30 June 2021, 19:04:05 UTC |
883337a | Tadgh | 30 June 2021, 18:55:57 UTC | Tidying | 30 June 2021, 18:55:57 UTC |
91dee55 | Tadgh | 30 June 2021, 18:49:37 UTC | Correct docs | 30 June 2021, 18:49:37 UTC |
fa750d2 | Michael Buckley | 30 June 2021, 18:47:58 UTC | $mdm-submit operation was only submitting 100 resources and then stopping. It now correctly submits all requested resources. | 30 June 2021, 18:48:28 UTC |
8f3cbb0 | Tadgh | 30 June 2021, 18:48:13 UTC | Refactor docs | 30 June 2021, 18:48:13 UTC |
61260dd | Tadgh | 30 June 2021, 15:54:59 UTC | Slightly more portable solution for paging | 30 June 2021, 15:54:59 UTC |
4a1b836 | Clark Van Oyen | 30 June 2021, 12:36:38 UTC | Add Cortico to HAPI FHIR Global Atlas (#2769) Cortico uses HAPI FHIR to help medical providers engage seamlessly with patients over video, email and SMS. | 30 June 2021, 12:36:38 UTC |
a770d57 | Tadgh | 29 June 2021, 21:46:03 UTC | Initial quick implementation of paging with tests | 29 June 2021, 21:46:03 UTC |
795fb31 | Ken Stevens | 29 June 2021, 03:24:37 UTC | fixed mdm rules (#2764) * fixed mdm rules * changelog * review feedback jetbrains * review feedback | 29 June 2021, 03:24:37 UTC |
9500a1a | Ken Stevens | 27 June 2021, 14:34:32 UTC | fix false rule matches (#2762) * fixed an issue with matching compartments to lists of ids * change log * Added extra guards against false rule matches. * changelog * fix inCompartment * cleanup | 27 June 2021, 14:34:32 UTC |
5565bf9 | Ken Stevens | 27 June 2021, 00:24:28 UTC | fixed an issue with matching compartments to lists of ids (#2761) * fixed an issue with matching compartments to lists of ids * change log | 27 June 2021, 00:24:28 UTC |
ea98e62 | Ken Stevens | 26 June 2021, 15:48:47 UTC | collapse multiple owners for same compartment into shared compartment (#2760) * collapse multiple owners for same compartment into shared compartment * changelog * fix regression * fix regression * pre-review cleanup * pre-review cleanup | 26 June 2021, 15:48:47 UTC |
110173d | michaelabuckley | 25 June 2021, 18:29:43 UTC | Merge pull request #2757 from hapifhir/2091-MemoryCacheService-confused-expiry Fix units on cache expiry | 25 June 2021, 18:29:43 UTC |
f1b8802 | michaelabuckley | 25 June 2021, 18:19:04 UTC | Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2758-fix-cache-expiry-units.yaml Co-authored-by: Tadgh <tadgh@cs.toronto.edu> | 25 June 2021, 18:19:04 UTC |
b31e464 | Michael Buckley | 25 June 2021, 15:01:41 UTC | Found bad growing cache scenario | 25 June 2021, 15:01:41 UTC |
7185089 | James Agnew | 25 June 2021, 14:40:39 UTC | Add forced offset search JPA interceptor (#2756) * Add support for offset searches * Tests working * Add changelog * Test fixes * Test fix * More test fixes * Add commit counter | 25 June 2021, 14:40:39 UTC |
c642690 | Tadgh | 25 June 2021, 13:03:35 UTC | Merge pull request #2752 from hapifhir/2751-jv-bump-bulk-export-job-request-length Increase bulk export job request length | 25 June 2021, 13:03:35 UTC |
1367e61 | Michael Buckley | 24 June 2021, 23:13:54 UTC | changelog | 24 June 2021, 23:13:54 UTC |
e74dec1 | Michael Buckley | 24 June 2021, 23:04:41 UTC | Fix units on cache expiry Added a test to abuse Caffeine | 24 June 2021, 23:04:41 UTC |
914cf53 | Josiah | 24 June 2021, 19:56:05 UTC | Merge branch 'master' into 2751-jv-bump-bulk-export-job-request-length | 24 June 2021, 19:56:05 UTC |
8a2ad8d | Tadgh | 24 June 2021, 19:55:18 UTC | Merge pull request #2755 from hapifhir/fix-test-bug Swap to URI instead of token for test | 24 June 2021, 19:55:18 UTC |
8dcb605 | Tadgh | 24 June 2021, 19:48:51 UTC | Swap to URI instead of token | 24 June 2021, 19:48:51 UTC |
a9208a8 | Josiah | 24 June 2021, 15:48:31 UTC | Revert "Version bump" This reverts commit 1f5fa70fb6a4529c8b13b530b21f6d9300216065. | 24 June 2021, 15:48:31 UTC |
1f5fa70 | Josiah | 24 June 2021, 15:22:35 UTC | Version bump | 24 June 2021, 15:22:35 UTC |