| 2e105bf | Stephanie Yan | 23 August 2021, 15:32:48 UTC | include moderate LD threshold | 23 August 2021, 15:32:48 UTC |
| b19a9ee | Rajiv McCoy | 19 August 2021, 02:35:09 UTC | Replace YRI with ESN | 19 August 2021, 02:35:09 UTC |
| 60891c0 | Rajiv McCoy | 09 August 2021, 20:34:59 UTC | add supplementary figures | 09 August 2021, 20:34:59 UTC |
| 5f2ff80 | Stephanie Yan | 09 February 2021, 02:43:58 UTC | geuvadis filtering and fastqtl scripts | 09 February 2021, 02:43:58 UTC |
| e2e613c | Stephanie Yan | 07 February 2021, 00:23:54 UTC | modify fig3_q_matrix | 07 February 2021, 00:23:54 UTC |
| 793480a | Stephanie Yan | 06 February 2021, 23:44:53 UTC | update readme and remove some extra files | 06 February 2021, 23:44:53 UTC |
| b3e7763 | Stephanie Yan | 06 February 2021, 23:40:57 UTC | add code for running ohana on SVs | 06 February 2021, 23:40:57 UTC |
| 27ec6e1 | Rajiv McCoy | 01 February 2021, 19:35:52 UTC | Update README.md | 01 February 2021, 19:35:52 UTC |
| bba7692 | Rajiv McCoy | 01 February 2021, 19:35:34 UTC | Delete sv_metanalysis directory | 01 February 2021, 19:35:34 UTC |
| 3027c49 | Rajiv McCoy | 01 February 2021, 19:34:53 UTC | rename subdirectories | 01 February 2021, 19:34:53 UTC |
| a05eccc | Stephanie Yan | 30 January 2021, 03:56:18 UTC | update readme again | 30 January 2021, 03:56:18 UTC |
| 1b32ab4 | Stephanie Yan | 30 January 2021, 03:50:42 UTC | update readme | 30 January 2021, 03:50:42 UTC |
| 2eeb0b9 | Stephanie Yan | 30 January 2021, 03:43:19 UTC | add code for filtering and AF calculation on SV genotypes | 30 January 2021, 03:43:19 UTC |
| e315f51 | Stephanie Yan | 27 January 2021, 03:30:43 UTC | add paragraph post processing scripts | 27 January 2021, 03:30:43 UTC |
| 5a32a5d | Stephanie Yan | 26 January 2021, 20:55:15 UTC | remove .DS_Store | 26 January 2021, 20:55:15 UTC |
| 9441670 | Stephanie Yan | 26 January 2021, 20:54:26 UTC | add paragraph scripts | 26 January 2021, 20:54:26 UTC |
| bd958e6 | Stephanie Yan | 26 January 2021, 20:20:32 UTC | figS9 code | 26 January 2021, 20:20:32 UTC |
| 6e6d397 | Stephanie Yan | 26 January 2021, 01:49:46 UTC | figS2 code | 26 January 2021, 01:49:46 UTC |
| e080020 | Rajiv McCoy | 26 January 2021, 01:21:12 UTC | Delete .DS_Store | 26 January 2021, 01:21:12 UTC |
| 8f758e5 | Rajiv McCoy | 26 January 2021, 01:20:58 UTC | Rename figs/fig4_ohana/link.md to figs/fig4_and_6_ohana/link.md | 26 January 2021, 01:20:58 UTC |
| e1928c2 | Rajiv McCoy | 26 January 2021, 01:20:07 UTC | Rename figs/fig4_and_6/ohanafig4_and_6_ohana_plots.R to figs/fig4_and_6_ohana/fig4_and_6_ohana_plots.R | 26 January 2021, 01:20:07 UTC |
| 45bfbb5 | Rajiv McCoy | 26 January 2021, 01:19:34 UTC | add fig6 | 26 January 2021, 01:19:34 UTC |
| 0a3f406 | Rajiv McCoy | 25 January 2021, 19:44:10 UTC | Use chr1 SNPs as background | 25 January 2021, 19:44:10 UTC |
| 0911d80 | Rajiv McCoy | 25 January 2021, 18:25:15 UTC | Rename fig_s9_phewas.R to figs/figS11_phewas/fig_s11_phewas.R | 25 January 2021, 18:25:15 UTC |
| 8e3c935 | Rajiv McCoy | 25 January 2021, 18:24:21 UTC | Delete fig_4_selscan.R | 25 January 2021, 18:24:21 UTC |
| d16421f | Rajiv McCoy | 25 January 2021, 18:24:04 UTC | Rename slim/ighg4_growth.slim to figs/fig5_igh/ighg4_growth.slim | 25 January 2021, 18:24:04 UTC |
| 66a9d43 | Rajiv McCoy | 25 January 2021, 18:23:38 UTC | Rename slim/abc.R to figs/fig5_igh/abc.R | 25 January 2021, 18:23:38 UTC |
| 69cf041 | Rajiv McCoy | 25 January 2021, 18:22:53 UTC | Delete abc_wrapper.R | 25 January 2021, 18:22:53 UTC |
| 10b80df | Rajiv McCoy | 25 January 2021, 18:22:19 UTC | Create abc_wrapper.R | 25 January 2021, 18:22:19 UTC |
| 89e8e7c | Rajiv McCoy | 25 January 2021, 18:20:44 UTC | Update and rename fig3_ohana_plots.R to fig4_ohana_plots.R | 25 January 2021, 18:20:44 UTC |
| f4d39bd | Rajiv McCoy | 23 January 2021, 20:13:44 UTC | Create fig2_eqtl.R | 23 January 2021, 20:13:44 UTC |
| 8199182 | Stephanie Yan | 22 January 2021, 23:06:06 UTC | updating figure numbers, add sprime supplementary figure | 22 January 2021, 23:06:06 UTC |
| 11aa268 | Rajiv McCoy | 21 January 2021, 04:42:58 UTC | Delete mixcr.sh | 21 January 2021, 04:42:58 UTC |
| 9680e73 | Rajiv McCoy | 21 January 2021, 04:40:50 UTC | Delete fst directory | 21 January 2021, 04:40:50 UTC |
| 34bc4c6 | Rajiv McCoy | 21 January 2021, 04:40:37 UTC | Delete vcf directory | 21 January 2021, 04:40:37 UTC |
| 4cc5a1d | Rajiv McCoy | 21 January 2021, 04:38:56 UTC | Create abc.R | 21 January 2021, 04:38:56 UTC |
| c157064 | Rajiv McCoy | 21 January 2021, 04:37:58 UTC | Create ighg4_growth.slim | 21 January 2021, 04:37:58 UTC |
| 2df3011 | Stephanie Yan | 21 January 2021, 03:09:28 UTC | forgot that you need tidyr | 21 January 2021, 03:09:28 UTC |
| 91371ec | Stephanie Yan | 21 January 2021, 02:47:08 UTC | fig s8 all code | 21 January 2021, 02:47:08 UTC |
| 331a9f2 | Rajiv McCoy | 20 January 2021, 21:30:38 UTC | add local LRS plots | 20 January 2021, 21:30:38 UTC |
| af2e2d0 | Stephanie Yan | 20 January 2021, 20:38:27 UTC | Merge branch 'master' of https://github.com/mccoy-lab/sv_selection | 20 January 2021, 20:38:27 UTC |
| 310fa73 | Stephanie Yan | 20 January 2021, 20:38:15 UTC | R code for fig S1 | 20 January 2021, 20:38:15 UTC |
| 9459c63 | Rajiv McCoy | 20 January 2021, 20:13:47 UTC | Rename fig_4.R to fig_4_selscan.R | 20 January 2021, 20:13:47 UTC |
| 6a3c850 | Rajiv McCoy | 20 January 2021, 20:13:17 UTC | Rename phewas.R to fig_s9_phewas.R | 20 January 2021, 20:13:17 UTC |
| 561d127 | Rajiv McCoy | 20 January 2021, 20:12:50 UTC | Create fig_4.R | 20 January 2021, 20:12:50 UTC |
| 98f0e59 | Stephanie Yan | 20 January 2021, 19:58:42 UTC | reorganize figure directories | 20 January 2021, 19:58:42 UTC |
| 12ac425 | Rajiv McCoy | 14 January 2021, 14:12:28 UTC | add phenotype labels | 14 January 2021, 14:12:28 UTC |
| 6a307f8 | Rajiv McCoy | 13 January 2021, 19:26:19 UTC | Create phewas.R | 13 January 2021, 19:26:19 UTC |
| e2925e6 | Rajiv McCoy | 06 January 2021, 05:07:02 UTC | compute p-values | 06 January 2021, 05:07:02 UTC |
| 2fb456c | Stephanie Yan | 24 December 2020, 02:42:29 UTC | newick tree for IGHG4 | 24 December 2020, 02:42:29 UTC |
| 6ef8d60 | Stephanie Yan | 23 December 2020, 21:30:39 UTC | scripts for fig1 plots | 23 December 2020, 21:30:39 UTC |
| b3b24db | Stephanie Yan | 23 December 2020, 21:24:56 UTC | fig1 affinity file + plots | 23 December 2020, 21:24:56 UTC |
| 14a0480 | Stephanie Yan | 22 December 2020, 17:53:28 UTC | plot is probably too big to put on github | 22 December 2020, 17:53:28 UTC |
| f72690e | Stephanie Yan | 22 December 2020, 17:42:26 UTC | adcode and plots for figs 2 and 3 | 22 December 2020, 17:42:26 UTC |
| 3ed13fd | Rajiv McCoy | 19 December 2020, 18:52:02 UTC | fix output and threads | 19 December 2020, 18:52:02 UTC |
| 0bbf76d | Rajiv McCoy | 19 December 2020, 18:47:11 UTC | combine all mixcr steps with "analyze" | 19 December 2020, 18:47:11 UTC |
| b34f848 | Rajiv McCoy | 19 December 2020, 01:54:10 UTC | Create mixcr.sh | 19 December 2020, 01:54:10 UTC |
| 117fb6c | Rajiv McCoy | 12 July 2019, 02:56:38 UTC | adapt to SV data | 12 July 2019, 02:56:38 UTC |
| e684557 | Rajiv McCoy | 12 July 2019, 02:05:05 UTC | Rename 02-pbs.sh to 02-pbs.R | 12 July 2019, 02:05:05 UTC |
| 33347f5 | rmccoy7541 | 09 July 2019, 14:54:04 UTC | compute pbs | 09 July 2019, 14:54:04 UTC |
| 88f07c4 | Rajiv McCoy | 09 July 2019, 14:50:25 UTC | Delete WestEurasia_Africa.fst.fst | 09 July 2019, 14:50:25 UTC |
| 09981a3 | rmccoy7541 | 09 July 2019, 14:50:10 UTC | remove output suffix | 09 July 2019, 14:50:10 UTC |
| a990013 | rmccoy7541 | 09 July 2019, 14:45:10 UTC | compute pairwise fst | 09 July 2019, 14:45:10 UTC |
| 3198390 | rmccoy7541 | 09 July 2019, 14:28:45 UTC | create sample index | 09 July 2019, 14:28:45 UTC |
| bbeb552 | Rajiv McCoy | 09 July 2019, 13:20:11 UTC | Delete test | 09 July 2019, 13:20:11 UTC |
| e33b321 | rmccoy7541 | 09 July 2019, 13:18:13 UTC | add vcf data | 09 July 2019, 13:18:13 UTC |
| cf5f8f7 | rmccoy7541 | 09 July 2019, 13:17:20 UTC | ignore vcf.gz | 09 July 2019, 13:17:20 UTC |
| dc7af4b | rmccoy7541 | 09 July 2019, 13:15:53 UTC | add gitignore | 09 July 2019, 13:15:53 UTC |
| 3e0b882 | rmccoy7541 | 09 July 2019, 12:59:05 UTC | create vcf directory | 09 July 2019, 12:59:05 UTC |
| f87caab | Rajiv McCoy | 09 July 2019, 12:49:18 UTC | first commit | 09 July 2019, 12:49:18 UTC |
