| 31e1f7b | Daniel Himmelstein | 15 August 2017, 16:44:01 UTC | Doc: Improve README (#11) | 15 August 2017, 16:44:01 UTC |
| 33e512d | Daniel Himmelstein | 14 August 2017, 14:20:18 UTC | Fix lookahead in citation string regex (#10) Prevents substrings of longer citation strings from shortcircuiting the regex match and substitution. Closes https://github.com/greenelab/manubot/issues/9 | 14 August 2017, 14:20:18 UTC |
| e040b9d | Daniel Himmelstein | 11 August 2017, 15:08:24 UTC | Log timezone and datetime.now (#8) Refs https://github.com/greenelab/manubot/issues/3 | 11 August 2017, 15:08:24 UTC |
| 1723a22 | Daniel Himmelstein | 10 August 2017, 19:52:53 UTC | Fix manual references bug (#7) Previousely, manual references were not getting used. | 10 August 2017, 19:52:53 UTC |
| 115fbbd | Daniel Himmelstein | 09 August 2017, 20:51:33 UTC | Newline at end of JSON files (#6) | 09 August 2017, 20:51:33 UTC |
| bac27de | Daniel Himmelstein | 08 August 2017, 18:47:37 UTC | DOI citeproc URL: always overwrite URL (#5) Always set the URL for a DOI using the DOI. Fixes https://travis-ci.org/greenelab/manubot/builds/262063044#L1509-L1520 | 08 August 2017, 18:47:37 UTC |
| 507fc21 | Daniel Himmelstein | 08 August 2017, 01:18:04 UTC | Re-enable test_citation_to_citeproc_doi_datacite Upstream issue resolved https://github.com/datacite/datacite/issues/187#issuecomment-320792057 | 08 August 2017, 01:18:04 UTC |
| 0fa0163 | Daniel Himmelstein | 07 August 2017, 18:34:05 UTC | Remove typo text (#4) | 07 August 2017, 18:34:05 UTC |
| ab4bb26 | Daniel Himmelstein | 07 August 2017, 16:26:23 UTC | Additional manuscript.py logging | 07 August 2017, 16:54:11 UTC |
| c42092b | Daniel Himmelstein | 07 August 2017, 16:10:31 UTC | Test: add manuscript with template variables | 07 August 2017, 16:54:11 UTC |
| dbacb45 | Daniel Himmelstein | 07 August 2017, 15:22:13 UTC | Rename test manuscripts | 07 August 2017, 16:54:11 UTC |
| 9636fe5 | Daniel Himmelstein | 04 August 2017, 21:25:24 UTC | Enable custom cache directory | 07 August 2017, 16:54:11 UTC |
| f61d123 | Daniel Himmelstein | 04 August 2017, 19:08:17 UTC | Allow internal underscores in citation strings | 07 August 2017, 16:54:11 UTC |
| 4968bb8 | Daniel Himmelstein | 04 August 2017, 17:10:14 UTC | Improve metadata error logging Builds failing due to https://github.com/datacite/datacite/issues/187 | 07 August 2017, 16:54:11 UTC |
| 5542402 | Daniel Himmelstein | 04 August 2017, 15:48:23 UTC | Process empty manuscripts / zero citations Add test for a manuscript with zero files (missing content directory). Closes https://github.com/greenelab/manubot-rootstock/issues/47 | 07 August 2017, 16:54:11 UTC |
| 901d9ba | Daniel Himmelstein | 03 August 2017, 17:51:39 UTC | Enable user-provided template variables Provide JSON variables for jinja2 from either a path or URL. Add logging for jinja2 template variables in the manuscript that are undefined. | 07 August 2017, 16:54:11 UTC |
| 6bb78e0 | Daniel Himmelstein | 02 August 2017, 19:05:41 UTC | DOI metadata: add shortDOI to citeproc | 07 August 2017, 16:54:11 UTC |
| dade757 | Daniel Himmelstein | 02 August 2017, 18:43:50 UTC | Add citaiton-tags.tsv to example-manuscript | 07 August 2017, 16:54:11 UTC |
| 983241d | Daniel Himmelstein | 01 August 2017, 21:10:40 UTC | Enable requests-cache | 07 August 2017, 16:54:11 UTC |
| 6b1fbde | Daniel Himmelstein | 01 August 2017, 20:27:46 UTC | Test manubot command line script | 07 August 2017, 16:54:11 UTC |
| b674c2f | Daniel Himmelstein | 01 August 2017, 20:26:39 UTC | Create manubot command line script | 07 August 2017, 16:54:11 UTC |
| e3ab956 | Daniel Himmelstein | 30 July 2017, 20:34:02 UTC | Add pmid citation test | 07 August 2017, 16:54:11 UTC |
| 65d4237 | Daniel Himmelstein | 30 July 2017, 16:53:21 UTC | Travis CI: cache pip installs | 07 August 2017, 16:54:11 UTC |
| bd8d1aa | Daniel Himmelstein | 30 July 2017, 00:58:04 UTC | Remove requests-cache due to Travis CI error See https://travis-ci.org/greenelab/manubot/builds/258991246#L556 ``` error: The 'requests' distribution was not found and is required by manubot ``` | 07 August 2017, 16:54:11 UTC |
| cecb00c | Daniel Himmelstein | 30 July 2017, 00:45:44 UTC | Add manuscript citation functionality Refs https://github.com/greenelab/manubot-rootstock/issues/2 | 07 August 2017, 16:54:11 UTC |
| ada2e23 | Daniel Himmelstein | 29 July 2017, 22:29:22 UTC | utilities.py: add get_citation_id function | 07 August 2017, 16:54:11 UTC |
| 9d0615f | Daniel Himmelstein | 29 July 2017, 21:59:02 UTC | Add gitignore | 07 August 2017, 16:54:11 UTC |
| 99306a8 | Daniel Himmelstein | 29 July 2017, 21:32:35 UTC | Remove metadata.get_doi_bibtex | 07 August 2017, 16:54:11 UTC |
| 78d7ece | Daniel Himmelstein | 29 July 2017, 21:14:07 UTC | Remove arxiv2bib dependency | 07 August 2017, 16:54:11 UTC |
| ece9d00 | Daniel Himmelstein | 13 July 2017, 22:11:04 UTC | Fix package name | 13 July 2017, 22:11:04 UTC |
| 555a420 | Daniel Himmelstein | 13 July 2017, 19:39:24 UTC | Ensure DOI citeproc always has URL | 13 July 2017, 19:39:24 UTC |
| b0da176 | Daniel Himmelstein | 29 June 2017, 15:45:49 UTC | Add metadata.py from the deep review From https://github.com/dhimmel/deep-review/commit/2d192d721f4584713f7e9ebf540203bef4fa7402 | 29 June 2017, 15:45:49 UTC |
| 54e11b7 | Daniel Himmelstein | 29 June 2017, 15:32:50 UTC | Configure Travis for CI | 29 June 2017, 15:34:23 UTC |
| d1d2791 | Daniel Himmelstein | 29 June 2017, 15:32:29 UTC | Add setup.py | 29 June 2017, 15:32:29 UTC |
| d898b56 | Daniel Himmelstein | 29 June 2017, 15:07:46 UTC | Initial commit | 29 June 2017, 15:07:46 UTC |
