32e3748 | jiwoncpark | 09 February 2020, 08:09:44 UTC | Enable background_noise calculation in torch without entering unnecessary variables | 09 February 2020, 08:09:44 UTC |
417c58e | swagnercarena | 08 February 2020, 01:47:39 UTC | Merge pull request #47 from jiwoncpark/issue/46 Changed the variable in tf noise model causing the code to crash | 08 February 2020, 01:47:39 UTC |
7f4fdec | Sebastian Wagner-Carena | 08 February 2020, 00:16:08 UTC | changed variable name | 08 February 2020, 00:16:08 UTC |
7941787 | Ji Won Park | 07 February 2020, 21:34:21 UTC | Merge pull request #45 from jiwoncpark/issue/44 Fixed bug in lognorm. | 07 February 2020, 21:34:21 UTC |
a975714 | Sebastian Wagner-Carena | 07 February 2020, 21:27:35 UTC | fixed bug in lognorm | 07 February 2020, 21:27:35 UTC |
5cc1193 | jiwoncpark | 07 February 2020, 02:37:58 UTC | Follow the new import path for noise models | 07 February 2020, 02:37:58 UTC |
128054c | jiwoncpark | 07 February 2020, 02:37:37 UTC | Update baobab configs to not specify noise-related parameters and give hyperparameters for FlatLCDM | 07 February 2020, 02:37:37 UTC |
433fc3d | jiwoncpark | 07 February 2020, 02:30:27 UTC | Import FlatLambdaCDM (bug) | 07 February 2020, 02:30:27 UTC |
a249eb7 | jiwoncpark | 07 February 2020, 02:28:49 UTC | Hardcode noiseless image generation | 07 February 2020, 02:28:49 UTC |
becebc2 | jiwoncpark | 07 February 2020, 02:27:56 UTC | Simplify cosmology to flat LCDM for consistency with H0rton | 07 February 2020, 02:27:56 UTC |
853a753 | jiwoncpark | 06 February 2020, 23:55:12 UTC | Merge branch 'master' of https://github.com/jiwoncpark/baobab | 06 February 2020, 23:55:12 UTC |
b999683 | jiwoncpark | 06 February 2020, 23:55:06 UTC | Hardcode baobab to generate noiseless images | 06 February 2020, 23:55:06 UTC |
49cba8b | Ji Won Park | 06 February 2020, 03:47:08 UTC | Merge pull request #43 from jiwoncpark/issue/42 Issue/42 | 06 February 2020, 03:47:08 UTC |
d8e4d64 | Sebastian Wagner-Carena | 05 February 2020, 17:41:57 UTC | added numba to requirements file | 05 February 2020, 17:41:57 UTC |
38fbf0e | Sebastian Wagner-Carena | 05 February 2020, 17:32:39 UTC | implemented new numba function, tested that they improve evaluation speed, and made sure they still give the same output as scipy functions | 05 February 2020, 17:32:39 UTC |
5ad9c79 | jiwoncpark | 05 February 2020, 16:14:25 UTC | Merge branch 'master' of https://github.com/jiwoncpark/baobab | 05 February 2020, 16:14:25 UTC |
7662c05 | jiwoncpark | 05 February 2020, 16:14:15 UTC | Enable user to optionally NOT add noise by setting cfg.image.add_noise to False -- note this is different from setting background_noise to zero as background noise includes sky and readout but not CCD | 05 February 2020, 16:14:15 UTC |
1780ef2 | Ji Won Park | 31 January 2020, 19:49:30 UTC | Merge pull request #39 from jiwoncpark/issue/38 Issue/38 | 31 January 2020, 19:49:30 UTC |
2cb3d31 | jiwoncpark | 31 January 2020, 19:48:04 UTC | Do not import both tensorflow and torch with init, in case both are not installed | 31 January 2020, 19:48:04 UTC |
48556ca | jiwoncpark | 31 January 2020, 19:46:41 UTC | Allow null PSF for DC2 verification | 31 January 2020, 19:46:41 UTC |
a06222f | jiwoncpark | 31 January 2020, 19:45:48 UTC | Export the absolute time delays and corresponding image positions | 31 January 2020, 19:45:48 UTC |
a74ef75 | Sebastian Wagner-Carena | 29 January 2020, 01:59:49 UTC | all approx distributions implemented and tested | 29 January 2020, 01:59:49 UTC |
39076bf | Sebastian Wagner-Carena | 29 January 2020, 00:43:58 UTC | fixed lognorm | 29 January 2020, 00:43:58 UTC |
2fb5429 | Sebastian Wagner-Carena | 29 January 2020, 00:42:31 UTC | pdf now returns 0 when out of bounds for generalized normal | 29 January 2020, 00:42:31 UTC |
636bd20 | jiwoncpark | 21 January 2020, 23:57:00 UTC | Add missing self argument | 21 January 2020, 23:57:00 UTC |
cb0eff5 | jiwoncpark | 21 January 2020, 23:55:39 UTC | Allow BaobabConfig to return the noise_kwargs for input into noise model for online data augmentation | 21 January 2020, 23:55:39 UTC |
db0ce12 | jiwoncpark | 21 January 2020, 23:46:18 UTC | Get image shape from tf.shape() rather than calling tensor's shape method | 21 January 2020, 23:46:18 UTC |
e6bf6c1 | jiwoncpark | 21 January 2020, 23:44:31 UTC | Modularize some bigger functions and remove extraneous imports | 21 January 2020, 23:44:31 UTC |
339b332 | jiwoncpark | 21 January 2020, 23:27:19 UTC | Pad image position arrays with zeros at the end, with max size 4 | 21 January 2020, 23:27:19 UTC |
d5ef0e5 | jiwoncpark | 16 January 2020, 00:21:06 UTC | Move velocity dispersion computation out of bnn prior object so it can be imported by h0rton during H0 inference | 16 January 2020, 00:21:06 UTC |
f1e8ed6 | jiwoncpark | 20 December 2019, 00:53:05 UTC | Separate out lognormal sampler and pdf eval and add logpdf eval for all distributions, with corresponding updates to config files, tests passing | 20 December 2019, 00:53:05 UTC |
26cda9b | jiwoncpark | 20 December 2019, 00:52:08 UTC | Fix weird line breaks | 20 December 2019, 00:52:08 UTC |
3217c44 | jiwoncpark | 19 December 2019, 22:36:09 UTC | Add importable dictionary of all distributions with their (ordered) list of hyperparams | 19 December 2019, 22:36:09 UTC |
16c48fa | jiwoncpark | 18 December 2019, 00:37:06 UTC | Remove printing of metadata columns in the last line, as it's empty if checkpointing interval goes into n_data evenly | 18 December 2019, 00:37:06 UTC |
431e715 | jiwoncpark | 17 December 2019, 23:27:26 UTC | Move the TF noise test out for now | 17 December 2019, 23:27:26 UTC |
d9317c0 | jiwoncpark | 17 December 2019, 23:13:27 UTC | Force CPU at test class init | 17 December 2019, 23:13:27 UTC |
9c66c15 | jiwoncpark | 17 December 2019, 23:09:01 UTC | Check disk space again | 17 December 2019, 23:09:01 UTC |
e2b6e5f | jiwoncpark | 17 December 2019, 23:08:28 UTC | Restore python image | 17 December 2019, 23:08:28 UTC |
382b855 | jiwoncpark | 17 December 2019, 22:52:03 UTC | Run each test script manually | 17 December 2019, 22:52:03 UTC |
e061e9e | jiwoncpark | 17 December 2019, 22:37:15 UTC | Remove unused imports and try running two specific tests | 17 December 2019, 22:37:15 UTC |
63088f9 | jiwoncpark | 17 December 2019, 22:27:12 UTC | Fix pyasnl version error | 17 December 2019, 22:27:12 UTC |
a86cfb3 | jiwoncpark | 17 December 2019, 22:19:49 UTC | Pip install silently, without progress bars | 17 December 2019, 22:19:49 UTC |
283b340 | jiwoncpark | 17 December 2019, 22:12:32 UTC | Try importing each module used by tests | 17 December 2019, 22:12:32 UTC |
323c8b0 | jiwoncpark | 17 December 2019, 21:59:52 UTC | See which pip3 version is being used and where it is | 17 December 2019, 21:59:52 UTC |
9917a42 | jiwoncpark | 17 December 2019, 21:53:00 UTC | Remove pip3 freeze as it causes import errors | 17 December 2019, 21:53:00 UTC |
f81b02f | jiwoncpark | 17 December 2019, 21:50:20 UTC | Update scipy, pandas, matplotlib, astropy before testing that causes segfault | 17 December 2019, 21:50:20 UTC |
b186bc5 | jiwoncpark | 17 December 2019, 21:41:21 UTC | Update all pip packages in case they are causing the segfault, attempt 2 with sudo permission | 17 December 2019, 21:41:21 UTC |
a3fa298 | jiwoncpark | 17 December 2019, 21:36:12 UTC | Update all pip packages in case they are causing the segfault | 17 December 2019, 21:36:12 UTC |
87b11a8 | jiwoncpark | 17 December 2019, 21:11:26 UTC | Have apt install hdf5 libraries rather than hdf5 itself | 17 December 2019, 21:11:26 UTC |
04065f9 | jiwoncpark | 17 December 2019, 21:07:44 UTC | Have apt install hdf5 rather than pip, as pip doesn't install development headers, attempt 2 | 17 December 2019, 21:07:44 UTC |
6da1d84 | jiwoncpark | 17 December 2019, 21:05:59 UTC | Have apt install hdf5 rather than pip, as pip doesn't install development headers | 17 December 2019, 21:05:59 UTC |
265300f | jiwoncpark | 17 December 2019, 03:20:11 UTC | Install libhdf5-serial-dev instead | 17 December 2019, 03:20:11 UTC |
a4c91b1 | jiwoncpark | 17 December 2019, 03:17:06 UTC | Install libhdf5, though travis is using python3.5 somehow | 17 December 2019, 03:17:06 UTC |
3817552 | jiwoncpark | 17 December 2019, 03:05:09 UTC | Upgrade pip with sudo | 17 December 2019, 03:05:09 UTC |
d88f6d8 | jiwoncpark | 17 December 2019, 02:52:03 UTC | Do not replace system pip | 17 December 2019, 02:52:03 UTC |
71a50b8 | jiwoncpark | 17 December 2019, 02:47:58 UTC | Switch from user to sudo | 17 December 2019, 02:47:58 UTC |
ebdd405 | jiwoncpark | 17 December 2019, 02:45:46 UTC | Update pip for matplotlib | 17 December 2019, 02:45:46 UTC |
f3496aa | jiwoncpark | 17 December 2019, 02:41:42 UTC | Do not specify wheel url, as it doesn't work on minimal platform | 17 December 2019, 02:41:42 UTC |
8f416fe | jiwoncpark | 17 December 2019, 02:36:22 UTC | Install setuptools for minimal image | 17 December 2019, 02:36:22 UTC |
69e929e | jiwoncpark | 17 December 2019, 02:34:10 UTC | Install python3-pip | 17 December 2019, 02:34:10 UTC |
7b610b8 | jiwoncpark | 17 December 2019, 02:28:34 UTC | Use user flag for pip3 | 17 December 2019, 02:28:34 UTC |
dbac311 | jiwoncpark | 17 December 2019, 02:27:20 UTC | Specify pip3 with minimal image | 17 December 2019, 02:27:20 UTC |
d4b6aed | jiwoncpark | 17 December 2019, 02:21:16 UTC | Check memory usage and switch to minimal Travis image | 17 December 2019, 02:21:16 UTC |
c35f4d6 | jiwoncpark | 17 December 2019, 02:08:50 UTC | Specify CPU versions of ML packages | 17 December 2019, 02:08:50 UTC |
bda51fa | jiwoncpark | 17 December 2019, 01:56:50 UTC | Do not encode torch or tf tests in setup.py, instead only run them in Travis | 17 December 2019, 01:56:50 UTC |
abff818 | jiwoncpark | 17 December 2019, 01:56:12 UTC | Leave one of read_noise or background_noise in the configs to prevent lenstronomy warning | 17 December 2019, 01:56:12 UTC |
aada4b6 | jiwoncpark | 17 December 2019, 01:40:51 UTC | Force CPU usage | 17 December 2019, 01:40:51 UTC |
27c2c77 | jiwoncpark | 17 December 2019, 01:40:37 UTC | Find tests with unittest, since nose hasn't been maintained for a while | 17 December 2019, 01:40:37 UTC |
c5aab89 | jiwoncpark | 17 December 2019, 01:22:06 UTC | Let pip figure out version number for ml dependencies | 17 December 2019, 01:22:06 UTC |
7878beb | jiwoncpark | 17 December 2019, 01:19:04 UTC | Do not store ccache and specify ml framework versions | 17 December 2019, 01:19:04 UTC |
bf17888 | jiwoncpark | 17 December 2019, 01:01:55 UTC | Implement and test selection_utils while updating config files accordingly, tests passing | 17 December 2019, 01:01:55 UTC |
bfa8ad7 | jiwoncpark | 17 December 2019, 01:00:50 UTC | Clear memory once checkpointed and delegate selection to a separate module | 17 December 2019, 01:00:50 UTC |
2c77c72 | jiwoncpark | 17 December 2019, 01:00:13 UTC | Remove unused imports | 17 December 2019, 01:00:13 UTC |
ca83fad | jiwoncpark | 12 December 2019, 09:37:36 UTC | Allow alternate parameter definitions | 12 December 2019, 09:37:36 UTC |
6b4504d | jiwoncpark | 10 December 2019, 11:30:12 UTC | Remove np array from cov, empirical configs for json serialization, test_generate passing | 10 December 2019, 11:30:12 UTC |
837a8ff | jiwoncpark | 10 December 2019, 10:14:18 UTC | Attempt to update to_hdf5 to latest generate script, erroring | 10 December 2019, 10:14:18 UTC |
71e5e68 | jiwoncpark | 10 December 2019, 10:11:18 UTC | Export log into the out_dir for neatness | 10 December 2019, 10:11:18 UTC |
d90de03 | jiwoncpark | 10 December 2019, 10:10:46 UTC | Attempt to update all notebooks to latest generate script, erroring at json serialization | 10 December 2019, 10:10:46 UTC |
d12b562 | jiwoncpark | 10 December 2019, 09:46:47 UTC | Update image viz demo to latest baobab | 10 December 2019, 09:46:47 UTC |
babbdb4 | jiwoncpark | 10 December 2019, 09:41:45 UTC | Update visualize demo to latest baobab diagonal cosmo, updates to other notebooks pending | 10 December 2019, 09:41:45 UTC |
f261754 | jiwoncpark | 10 December 2019, 09:41:14 UTC | Use dictionary indexing, not class attribute indexing in case argument is python's native dict | 10 December 2019, 09:41:14 UTC |
a2fd3aa | jiwoncpark | 10 December 2019, 09:40:12 UTC | Export baobab log in the beginning and checkpoint metadata saving | 10 December 2019, 09:40:12 UTC |
99c3991 | jiwoncpark | 10 December 2019, 09:39:35 UTC | Set aside calculation of cosmography-related observables, which is optional | 10 December 2019, 09:39:35 UTC |
6c737f6 | jiwoncpark | 10 December 2019, 09:38:40 UTC | Allow user to specify min difference in z_src and z_lens | 10 December 2019, 09:38:40 UTC |
1afff6f | jiwoncpark | 10 December 2019, 09:38:02 UTC | Do not inplace-modify hyperparams dict passed as argument | 10 December 2019, 09:38:02 UTC |
b292d4b | jiwoncpark | 01 December 2019, 23:41:35 UTC | Enable option to bypass velocity dispersion calculation, which slows down Baobab by a factor of 3.5 and is not required for BNN training | 01 December 2019, 23:41:35 UTC |
218eacf | jiwoncpark | 01 December 2019, 23:36:57 UTC | Remove TF test from torch test module | 01 December 2019, 23:36:57 UTC |
5b163f5 | jiwoncpark | 01 December 2019, 23:36:42 UTC | Test TF noise, which passes locally with GPU but fails with setup.py test | 01 December 2019, 23:36:42 UTC |
ac07921 | jiwoncpark | 01 December 2019, 23:35:42 UTC | Enable total magnification cut | 01 December 2019, 23:35:42 UTC |
6329ba2 | jiwoncpark | 01 December 2019, 23:05:46 UTC | Separate out utility modules from generate script | 01 December 2019, 23:05:46 UTC |
a1118b8 | jiwoncpark | 01 December 2019, 09:56:27 UTC | Compare and individually test lenstronomy, torch, and tf noise addition | 01 December 2019, 09:56:27 UTC |
4e6c466 | jiwoncpark | 01 December 2019, 09:55:57 UTC | Implement noise modules for lenstronomy, torch, and tf | 01 December 2019, 09:55:57 UTC |
05f94a7 | jiwoncpark | 01 December 2019, 09:55:14 UTC | Update RTD and setuptools for data_augmentation package | 01 December 2019, 09:55:14 UTC |
a6a5616 | jiwoncpark | 01 December 2019, 09:54:19 UTC | Check in minor updates to test_distributions | 01 December 2019, 09:54:19 UTC |
efc135d | jiwoncpark | 22 November 2019, 22:36:38 UTC | Export columns corresponding to sampled kwargs for instantiated BNNPrior class | 22 November 2019, 22:36:38 UTC |
6ed2b42 | jiwoncpark | 21 November 2019, 03:07:56 UTC | Begin to validate kinematics cfg | 21 November 2019, 03:07:56 UTC |
a5eeabd | jiwoncpark | 21 November 2019, 03:07:37 UTC | Replace deprecated LensProp with TDCosmography | 21 November 2019, 03:07:37 UTC |
a2a3741 | jiwoncpark | 21 November 2019, 03:07:03 UTC | Clean up unused functions and imports | 21 November 2019, 03:07:03 UTC |
da9b70e | jiwoncpark | 20 November 2019, 21:24:29 UTC | Merge branch 'issue/26' | 20 November 2019, 21:24:29 UTC |
a84aa3e | jiwoncpark | 20 November 2019, 21:23:10 UTC | Visualize metdata and images for DiagonalCosmoBNNPrior | 20 November 2019, 21:23:10 UTC |