| 32f0813 | Jack Gisby | 09 February 2021, 13:57:36 UTC | Re-generate RMD output | 09 February 2021, 13:57:36 UTC |
| e39d1c3 | Jack Gisby | 09 February 2021, 13:43:49 UTC | Update paper title | 09 February 2021, 13:43:49 UTC |
| 1bd0036 | Jack Gisby | 09 February 2021, 13:39:58 UTC | Add paper DOI | 09 February 2021, 13:39:58 UTC |
| 28c7b58 | Jack Gisby | 09 February 2021, 13:38:04 UTC | Merge pull request #1 from jackgisby/changes Updates following review | 09 February 2021, 13:38:04 UTC |
| 2a857ee | Jack Gisby | 04 February 2021, 22:58:11 UTC | Make loadings-only plot | 04 February 2021, 22:58:11 UTC |
| 7660c74 | Jack Gisby | 04 February 2021, 13:07:20 UTC | Update PCA to allow for training based on another dataset | 04 February 2021, 13:07:20 UTC |
| d5a145f | Jack Gisby | 12 January 2021, 19:47:31 UTC | Add glmnet option for ML | 12 January 2021, 19:47:31 UTC |
| 5b07350 | Jack Gisby | 04 November 2020, 09:56:12 UTC | Add clinical measurement concentrations | 04 November 2020, 09:56:12 UTC |
| 52424e5 | Jack Gisby | 04 November 2020, 00:33:48 UTC | Add severity volcano title | 04 November 2020, 00:33:48 UTC |
| 51fd030 | Jack Gisby | 04 November 2020, 00:13:32 UTC | Update markdown details | 04 November 2020, 00:13:32 UTC |
| 3079097 | Jack Gisby | 03 November 2020, 16:50:07 UTC | Resize markdown figures | 03 November 2020, 16:50:07 UTC |
| ccf0f9e | Jack Gisby | 03 November 2020, 16:40:15 UTC | Remove paged tables from markdown | 03 November 2020, 16:40:15 UTC |
| 6747bd9 | Jack Gisby | 03 November 2020, 16:32:06 UTC | Use rmarkdown::github_document | 03 November 2020, 16:32:06 UTC |
| c459574 | Jack Gisby | 03 November 2020, 16:20:54 UTC | Add example markdown | 03 November 2020, 16:20:54 UTC |
| 58859cc | Jack Gisby | 03 November 2020, 16:00:38 UTC | Update example script with comments | 03 November 2020, 16:00:38 UTC |
| 0f1f889 | Jack Gisby | 03 November 2020, 13:53:28 UTC | Update README | 03 November 2020, 13:53:28 UTC |
| 4c6fa0e | Jack Gisby | 03 November 2020, 13:17:05 UTC | Update custom function documentation | 03 November 2020, 13:17:05 UTC |
| 87c99c5 | Jack Gisby | 03 November 2020, 12:51:40 UTC | Add rmd and data | 03 November 2020, 12:51:40 UTC |
| d7cc3cd | Jack Gisby | 03 November 2020, 12:35:57 UTC | Get first sample of undated samples | 03 November 2020, 12:35:57 UTC |
| 1f9be54 | Jack Gisby | 31 October 2020, 16:18:32 UTC | Updates for example script | 31 October 2020, 16:18:32 UTC |
| 37512b5 | Jack Gisby | 31 October 2020, 15:09:59 UTC | Implement joint models | 31 October 2020, 15:09:59 UTC |
| 1ebc46d | Jack Gisby | 31 October 2020, 13:57:04 UTC | Implement get_first_samples | 31 October 2020, 13:57:04 UTC |
| cfea978 | Jack Gisby | 31 October 2020, 13:56:41 UTC | In progress updates | 31 October 2020, 13:56:41 UTC |
| 85d8966 | Jack Gisby | 17 September 2020, 23:56:48 UTC | Switch to ridge regression and integrate into plot_rf | 17 September 2020, 23:56:48 UTC |
| ecd655d | Jack Gisby | 17 September 2020, 20:21:12 UTC | Update lasso parameters | 17 September 2020, 20:21:12 UTC |
| cded49b | Jack Gisby | 17 September 2020, 20:06:48 UTC | Add lasso function | 17 September 2020, 20:06:48 UTC |
| 37882a6 | Jack Gisby | 10 September 2020, 11:38:47 UTC | Re-generate documentation | 10 September 2020, 11:38:47 UTC |
| a90bc5c | Jack Gisby | 10 September 2020, 11:08:29 UTC | Remove kmeans functions and add comments | 10 September 2020, 11:08:29 UTC |
| d0c8a38 | Jack Gisby | 06 September 2020, 01:22:14 UTC | Remove supervised plot titles | 06 September 2020, 01:22:14 UTC |
| 30a4501 | Jack Gisby | 04 September 2020, 20:52:55 UTC | Add covariates to simple lienar models for estimating betas | 04 September 2020, 20:52:55 UTC |
| c8b0dce | Jack Gisby | 18 August 2020, 01:35:14 UTC | Switch from UniqueGeneID to GeneID, update docs | 18 August 2020, 01:35:14 UTC |
| c8f633f | Jack Gisby | 18 August 2020, 01:34:17 UTC | Add rf functions | 18 August 2020, 01:34:17 UTC |
| 791511d | Jack Gisby | 13 August 2020, 13:35:55 UTC | Add lm functions (non-mixed models) | 13 August 2020, 13:35:55 UTC |
| cc0d9b2 | Jack Gisby | 09 August 2020, 09:54:33 UTC | Add function for ML preprocessing | 09 August 2020, 09:54:33 UTC |
| 404a625 | Jack Gisby | 28 July 2020, 01:45:09 UTC | Re-generate docs | 28 July 2020, 01:45:09 UTC |
| 8f193d0 | Jack Gisby | 28 July 2020, 01:44:54 UTC | Add serum phenotype data | 28 July 2020, 01:44:54 UTC |
| 0e4f863 | Jack Gisby | 28 July 2020, 01:43:59 UTC | Export median imputation function | 28 July 2020, 01:43:59 UTC |
| bc6af87 | Jack Gisby | 28 July 2020, 01:42:15 UTC | Add option to re-order predictor as ordinal | 28 July 2020, 01:42:15 UTC |
| e2f4f32 | Jack Gisby | 22 July 2020, 00:29:48 UTC | k-means clustering | 22 July 2020, 00:29:48 UTC |
| 694858e | Jack Gisby | 22 July 2020, 00:29:27 UTC | Olink heatmaps and correlation plots | 22 July 2020, 00:29:27 UTC |
| 955aa84 | Jack Gisby | 22 July 2020, 00:29:03 UTC | Basic volcano plot | 22 July 2020, 00:29:03 UTC |
| 57bb598 | Jack Gisby | 22 July 2020, 00:28:38 UTC | Update docs | 22 July 2020, 00:28:38 UTC |
| 90ef17a | jackgisby | 13 July 2020, 10:51:10 UTC | Delete unused scripts | 13 July 2020, 10:51:10 UTC |
| 28a0f38 | Jack Gisby | 13 July 2020, 08:31:59 UTC | Allow return of linear model in addition to plots | 13 July 2020, 08:31:59 UTC |
| 93b5600 | Jack Gisby | 10 July 2020, 21:05:34 UTC | Add heatmaps/corrplots | 10 July 2020, 21:05:34 UTC |
| 634c323 | Jack Gisby | 08 July 2020, 09:06:48 UTC | Use GeneIDs in PCA | 08 July 2020, 09:06:48 UTC |
| 9473223 | Jack Gisby | 07 July 2020, 23:40:43 UTC | Use clinical phenodata | 07 July 2020, 23:40:43 UTC |
| a9dca85 | jackgisby | 07 July 2020, 16:44:14 UTC | Add warning to README | 07 July 2020, 16:44:14 UTC |
| 539b45f | jackgisby | 07 July 2020, 16:38:01 UTC | Lookup gene IDs from uniprot | 07 July 2020, 16:38:01 UTC |
| 08f7955 | Jack Gisby | 04 July 2020, 01:30:22 UTC | Fix manifest left join | 04 July 2020, 01:30:22 UTC |
| ebd4cc9 | Jack Gisby | 04 July 2020, 01:12:11 UTC | Fix dplyr import | 04 July 2020, 01:12:11 UTC |
| 57f097f | Jack Gisby | 04 July 2020, 00:53:09 UTC | Fix read_npx sample IDs | 04 July 2020, 00:53:09 UTC |
| a6dd237 | Jack Gisby | 03 July 2020, 23:00:07 UTC | Remove quick_pca | 03 July 2020, 23:00:07 UTC |
| 8f3c4a9 | Jack Gisby | 03 July 2020, 22:26:01 UTC | Export new functions | 03 July 2020, 22:26:01 UTC |
| b2b3b25 | Jack Gisby | 03 July 2020, 20:29:47 UTC | Simple PCA plots | 03 July 2020, 20:29:47 UTC |
| 1f031e6 | Jack Gisby | 03 July 2020, 20:29:26 UTC | Change theme | 03 July 2020, 20:29:26 UTC |
| c4181f2 | Jack Gisby | 03 July 2020, 20:28:59 UTC | Fix read_npx | 03 July 2020, 20:28:59 UTC |
| c67ea4d | Jack Gisby | 02 July 2020, 18:15:18 UTC | Reformat package | 02 July 2020, 18:15:18 UTC |
| 32f0f2e | Jack Gisby | 02 July 2020, 09:53:28 UTC | Update README & project settings | 02 July 2020, 09:53:28 UTC |
| ca0f83d | Jack Gisby | 02 July 2020, 09:47:23 UTC | Add original processing scripts | 02 July 2020, 09:47:23 UTC |
| 2175d27 | Marianne Sandin | 18 June 2020, 13:28:09 UTC | Version 1.0.2: Help update in lmer and ANOVA. lmer outcome string fix. T-test check fix for number of datapoints needed in variable level. p-value ordering lmer posthoc. | 18 June 2020, 13:28:09 UTC |
| 066086d | Marianne Sandin | 03 June 2020, 12:47:28 UTC | Further README updates and olink_lmer_plot help fix | 03 June 2020, 12:47:28 UTC |
| 360cd4a | Marianne Sandin | 03 June 2020, 12:18:59 UTC | T-test compatibility with ANOVA and LMER. README update. | 03 June 2020, 12:18:59 UTC |
| a10cb73 | Marianne Sandin | 01 June 2020, 14:07:34 UTC | lmer_plot missing message change | 01 June 2020, 14:07:34 UTC |
| b2daf72 | Marianne Sandin | 01 June 2020, 11:01:52 UTC | Bugfix posthoc anova | 01 June 2020, 11:01:52 UTC |
| b5e7f90 | Marianne Sandin | 29 May 2020, 12:07:48 UTC | Readme logo update | 29 May 2020, 12:07:48 UTC |
| 204b3c9 | Marianne Sandin | 28 May 2020, 09:07:13 UTC | OlinkAnalyze 1.0.0! | 28 May 2020, 09:07:13 UTC |
| cd09c66 | Marianne Sandin | 16 April 2020, 10:51:53 UTC | Update of read_NPX to take QC deviation columns | 16 April 2020, 10:51:53 UTC |
| 3c582c0 | Christoffer Cambronero | 05 March 2020, 13:20:01 UTC | Update README.md | 05 March 2020, 13:20:01 UTC |
| df608f3 | Christoffer Cambronero | 05 March 2020, 13:19:36 UTC | Update README.Rmd | 05 March 2020, 13:19:36 UTC |
| b31b60d | Cambro | 05 March 2020, 11:55:08 UTC | Added so read_NPX can now read normalization method | 05 March 2020, 11:55:08 UTC |
| 5a8f4b5 | Cambro | 12 November 2019, 08:44:07 UTC | Small fixes | 12 November 2019, 08:44:07 UTC |
| d3d0b17 | Cambro | 11 November 2019, 14:57:50 UTC | Minor fixes | 11 November 2019, 14:57:50 UTC |
| df96024 | Cambro | 11 November 2019, 10:10:58 UTC | ReadMe update | 11 November 2019, 10:10:58 UTC |
| 1fb693a | Cambro | 11 November 2019, 10:09:49 UTC | Update ReadMe | 11 November 2019, 10:09:49 UTC |
| 5339d1a | Cambro | 08 November 2019, 14:43:59 UTC | ReadMe | 08 November 2019, 14:43:59 UTC |
| 269ae06 | Cambro | 08 November 2019, 10:19:40 UTC | Update R package name | 08 November 2019, 10:19:40 UTC |
| 03a66ea | Cambro | 08 November 2019, 10:17:42 UTC | Update R package name | 08 November 2019, 10:17:42 UTC |
| ff0bc79 | Cambro | 06 November 2019, 14:00:37 UTC | Import all functions from internal olinkr | 06 November 2019, 14:00:37 UTC |
| 7149f19 | Cambro | 06 November 2019, 12:01:42 UTC | Test | 06 November 2019, 12:01:42 UTC |
| 2c49781 | Anders Wählby | 06 November 2019, 10:18:47 UTC | Initial commit | 06 November 2019, 10:18:47 UTC |
