# Experimental protocols and bioinformatic pipelines for mumps genome sequencing

#### Louise Moncla<sup>1</sup>, Allison Black<sup>1,2</sup>, Trevor Bedford<sup>1

<sup>1</sup>Department of Epidemiology, University of Washington, Seattle, WA, USA, <sup>2</sup>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

* [protocols](https://github.com/blab/mumps-seq/tree/master/protocols) for Illumina sequencing full genomes from buccal swabs
* [bioinformatic pipeline](https://github.com/blab/mumps-seq/tree/master/pipelines) for generating consensus genome sequences from raw Illumina fastq files
* [data](https://github.com/blab/mumps-seq/tree/master/data)