Revision - 335e5c6 - Added resolve_roi_for_reference, which checks references before [...]

Revision 335e5c6d3f79a1c7b469dec133d9f62fe31aac0d authored by Gabriel Sanderson on 06 March 2014, 21:51:46 UTC, committed by Gabriel Sanderson on 06 March 2014, 21:58:14 UTC

Added resolve_roi_for_reference, which checks references before converting the bed file. Also do a basic check for "chr" chromosomes if they do not belong.

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File	Mode	Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ 311e4d9
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 584bc07
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ c3f7f08
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 95e944c
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ ac4c603
hooks
init
jenkins @ ad9380d
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ 723cadc
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
sqitch
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ b0d8d06
varscan @ 83ae9d8
vendor
workflow @ 4332dce
.gitignore	-rw-r--r--	302 bytes
.gitmodules	-rw-r--r--	9.5 KB
.mailmap	-rw-r--r--	301 bytes
.test-tracker.conf	-rw-r--r--	329 bytes
LICENSE	-rw-r--r--	7.5 KB
README	-rw-r--r--	155 bytes
WHERE_TO_PUT_CODE	-rw-r--r--	2.4 KB
create-c-project.sh	-rwxr-xr-x	2.9 KB
create-project	-rwxr-xr-x	2.9 KB
test-data-relocate-me	l---------	46 bytes

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Added resolve_roi_for_reference, which checks references before converting the bed file. Also do a basic check for "chr" chromosomes if they do not belong.

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