Revision 34065fd4617c342769d7b398c9679405cd9cf8b0 authored by Josh Willis on 20 September 2019, 19:44:46 UTC, committed by Ian Harry on 20 September 2019, 19:44:46 UTC
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test_injection.py
# Copyright (C) 2013 Tito Dal Canton, Josh Willis
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.

"""
Unit test for PyCBC's injection module.
"""

import tempfile
import lal
import pycbc
from pycbc.types import TimeSeries
from pycbc.detector import Detector, get_available_detectors
from pycbc.inject import InjectionSet
import unittest
import numpy
import itertools
from glue.ligolw import ligolw
from glue.ligolw import lsctables
from glue.ligolw import utils as ligolw_utils
from utils import parse_args_cpu_only, simple_exit

# Injection tests only need to happen on the CPU
parse_args_cpu_only("Injections")

class MyInjection(object):
    def fill_sim_inspiral_row(self, row):
        # using dummy values for many fields, should work for our purposes
        row.waveform = 'TaylorT4threePointFivePN'
        row.distance = self.distance
        total_mass = self.mass1 + self.mass2
        row.mass1 = self.mass1
        row.mass2 = self.mass2
        row.eta = self.mass1 * self.mass2 / total_mass ** 2
        row.mchirp = total_mass * row.eta ** (3. / 5.)
        row.latitude = self.latitude
        row.longitude = self.longitude
        row.inclination = self.inclination
        row.polarization = self.polarization
        row.phi0 = 0
        row.f_lower = 20
        row.f_final = lal.C_SI ** 3 / \
                (6. ** (3. / 2.) * lal.PI * lal.G_SI * total_mass)
        row.spin1x = row.spin1y = row.spin1z = 0
        row.spin2x = row.spin2y = row.spin2z = 0
        row.alpha1 = 0
        row.alpha2 = 0
        row.alpha3 = 0
        row.alpha4 = 0
        row.alpha5 = 0
        row.alpha6 = 0
        row.alpha = 0
        row.beta = 0
        row.theta0 = 0
        row.psi0 = 0
        row.psi3 = 0
        row.geocent_end_time = int(self.end_time)
        row.geocent_end_time_ns = int(1e9 * (self.end_time - row.geocent_end_time))
        row.end_time_gmst = lal.GreenwichMeanSiderealTime(
                lal.LIGOTimeGPS(self.end_time))
        for d in 'lhvgt':
            row.__setattr__('eff_dist_' + d, row.distance)
            row.__setattr__(d + '_end_time', row.geocent_end_time)
            row.__setattr__(d + '_end_time_ns', row.geocent_end_time_ns)
        row.amp_order = 0
        row.coa_phase = 0
        row.bandpass = 0
        row.taper = self.taper
        row.numrel_mode_min = 0
        row.numrel_mode_max = 0
        row.numrel_data = None
        row.source = 'ANTANI'

class TestInjection(unittest.TestCase):
    def setUp(self):
        available_detectors = get_available_detectors()
        available_detectors = [a[0] for a in available_detectors]
        self.assertTrue('H1' in available_detectors)
        self.assertTrue('L1' in available_detectors)
        self.assertTrue('V1' in available_detectors)
        self.detectors = [Detector(d) for d in ['H1', 'L1', 'V1']]
        self.sample_rate = 4096.
        self.earth_time = lal.REARTH_SI / lal.C_SI

        # create a few random injections
        self.injections = []
        start_time = float(lal.GPSTimeNow())
        taper_choices = ('TAPER_NONE', 'TAPER_START', 'TAPER_END', 'TAPER_STARTEND')
        for i, taper in zip(range(20), itertools.cycle(taper_choices)):
            inj = MyInjection()
            inj.end_time = start_time + 40000 * i + \
                    numpy.random.normal(scale=3600)
            random = numpy.random.uniform
            inj.mass1 = random(low=1., high=20.)
            inj.mass2 = random(low=1., high=20.)
            inj.distance = random(low=0.9, high=1.1) * 1e6 * lal.PC_SI
            inj.latitude = numpy.arccos(random(low=-1, high=1))
            inj.longitude = random(low=0, high=2 * lal.PI)
            inj.inclination = numpy.arccos(random(low=-1, high=1))
            inj.polarization = random(low=0, high=2 * lal.PI)
            inj.taper = taper
            self.injections.append(inj)

        # create LIGOLW document
        xmldoc = ligolw.Document()
        xmldoc.appendChild(ligolw.LIGO_LW())

        # create sim inspiral table, link it to document and fill it
        sim_table = lsctables.New(lsctables.SimInspiralTable)
        xmldoc.childNodes[-1].appendChild(sim_table)
        for i in range(len(self.injections)):
            row = sim_table.RowType()
            self.injections[i].fill_sim_inspiral_row(row)
            row.process_id = 'process:process_id:0'
            row.simulation_id = 'sim_inspiral:simulation_id:%d' % i
            sim_table.append(row)

        # write document to temp file
        self.inj_file = tempfile.NamedTemporaryFile(suffix='.xml')
        ligolw_utils.write_fileobj(xmldoc, self.inj_file)

    def test_injection_presence(self):
        """Verify presence of signals at expected times"""
        injections = InjectionSet(self.inj_file.name)
        for det in self.detectors:
            for inj in self.injections:
                ts = TimeSeries(numpy.zeros(int(10 * self.sample_rate)),
                                delta_t=1/self.sample_rate,
                                epoch=lal.LIGOTimeGPS(inj.end_time - 5),
                                dtype=numpy.float64)
                injections.apply(ts, det.name)
                max_amp, max_loc = ts.abs_max_loc()
                # FIXME could test amplitude and time more precisely
                self.assertTrue(max_amp > 0 and max_amp < 1e-10)
                time_error = ts.sample_times.numpy()[max_loc] - inj.end_time
                self.assertTrue(abs(time_error) < 2 * self.earth_time)

    def test_injection_absence(self):
        """Verify absence of signals outside known injection times"""
        clear_times = [
            self.injections[0].end_time - 86400,
            self.injections[-1].end_time + 86400
        ]
        injections = InjectionSet(self.inj_file.name)
        for det in self.detectors:
            for epoch in clear_times:
                ts = TimeSeries(numpy.zeros(int(10 * self.sample_rate)),
                                delta_t=1/self.sample_rate,
                                epoch=lal.LIGOTimeGPS(epoch),
                                dtype=numpy.float64)
                injections.apply(ts, det.name)
                max_amp, max_loc = ts.abs_max_loc()
                self.assertEqual(max_amp, 0)

suite = unittest.TestSuite()
suite.addTest(unittest.TestLoader().loadTestsFromTestCase(TestInjection))

if __name__ == '__main__':
    results = unittest.TextTestRunner(verbosity=2).run(suite)
    simple_exit(results)
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