dist: xenial
language: python
branches:
  only:
    - master  # All other branches should become (draft) PRs and be build that way
matrix:
  include:
  - name: "static analysis"
    python: "3.7"
    install:
    - pip install .[dev,doc]
    script:
    - black . --check --diff
    - python -m scanpy.tests.blackdiff 10
    - python setup.py check --restructuredtext --strict
    - rst2html.py --halt=2 README.rst >/dev/null
    after_success: skip
  - name: "anndata dev"
    python: "3.7"
    install:
    - pip install .[dev,test,louvain,leiden,magic,scvi,harmony,skmisc]
    - pip install git+https://github.com/theislab/anndata
python:
- '3.6'
- '3.7'
#- '3.8-dev' # https://github.com/numpy/numpy/issues/13790
cache:
- pip
- directories:
  - data
install:
- pip install .[dev,test,louvain,leiden,magic,scvi,harmony,skmisc]
env:
- MPLBACKEND=Agg
script:
- pytest --ignore=scanpy/tests/_images