https://github.com/dereneaton/ipyrad
Revision 34cf5f40346184eaa598f6677167199369ddfedd authored by Deren on 12 September 2022, 12:35:58 UTC, committed by Deren on 12 September 2022, 12:35:58 UTC
1 parent 1796fe5
Tip revision: 34cf5f40346184eaa598f6677167199369ddfedd authored by Deren on 12 September 2022, 12:35:58 UTC
split within steps into shared and unique files"
split within steps into shared and unique files"
Tip revision: 34cf5f4
environment.yml
# This file can be used to build a conda env: `conda create -f environment.yml`
name: ipyrad
channels:
- conda-forge
- bioconda
dependencies:
- python>=3.7
- ipython
- jupyter
- pydantic
- loguru
- requests
- h5py
- toyplot
- toytree
- pandas
- scipy
- numpy
- numba
- ipyparallel >=7.0
- pysam >=0.15
- vsearch >=2.13
- bedtools
- muscle
- fastp
- bwa
- samtools
- zlib
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