| 353ed3f | jdaeth274 | 23 June 2021, 17:57:20 UTC | outputting MIC values as well | 23 June 2021, 17:57:20 UTC |
| aad537d | jdaeth274 | 04 June 2021, 15:31:10 UTC | tweaking the sulfa and trim pipelines to allow for odd GFFs | 04 June 2021, 15:31:10 UTC |
| 119d75d | jdaeth274 | 12 May 2021, 15:34:29 UTC | adding in extra gff catcher | 12 May 2021, 15:34:29 UTC |
| 8684eae | jdaeth274 | 12 May 2021, 09:23:12 UTC | tweaking missing aas | 12 May 2021, 09:23:12 UTC |
| 1bd4d8e | jdaeth274 | 12 May 2021, 09:19:52 UTC | tweaking missing aas | 12 May 2021, 09:19:52 UTC |
| 48f4a45 | jdaeth274 | 12 May 2021, 09:16:21 UTC | reusing fasta for gps runs | 12 May 2021, 09:16:21 UTC |
| 9b5cd20 | jdaeth274 | 21 April 2021, 13:36:35 UTC | debugging 4021_5_11 | 21 April 2021, 13:36:35 UTC |
| 63f302e | jdaeth274 | 21 April 2021, 13:14:48 UTC | debugging 4021_5_11 | 21 April 2021, 13:14:48 UTC |
| 720826b | jdaeth274 | 21 April 2021, 11:37:28 UTC | allowing for newer contig names | 21 April 2021, 11:37:28 UTC |
| 389f08a | jdaeth274 | 21 April 2021, 08:59:17 UTC | expanding the gene names incorporated into search | 21 April 2021, 08:59:17 UTC |
| b48bbf6 | jdaeth274 | 13 April 2021, 17:08:24 UTC | updating readme and removing alignment requirement | 13 April 2021, 17:08:24 UTC |
| 918f3a6 | jdaeth274 | 13 April 2021, 16:30:15 UTC | losing brute exit | 13 April 2021, 16:30:15 UTC |
| dfd3d8e | jdaeth274 | 12 April 2021, 15:16:54 UTC | Tweaking missing proteins isolates | 12 April 2021, 15:16:54 UTC |
| 8b96d5c | jdaeth274 | 12 April 2021, 11:50:08 UTC | updating environment with blast | 12 April 2021, 11:50:08 UTC |
| 9bd6643 | jdaeth274 | 09 April 2021, 16:33:14 UTC | updating_readme | 09 April 2021, 16:33:14 UTC |
| a5ecf90 | jdaeth274 | 07 April 2021, 15:59:56 UTC | updating readme | 07 April 2021, 15:59:56 UTC |
| 53d324d | jdaeth274 | 07 April 2021, 15:59:19 UTC | updating readme | 07 April 2021, 15:59:19 UTC |
| bd4edf0 | jdaeth274 | 07 April 2021, 15:57:46 UTC | updating readme | 07 April 2021, 15:57:46 UTC |
| d25f717 | jdaeth274 | 07 April 2021, 15:50:50 UTC | adding in dependencies yml | 07 April 2021, 15:50:50 UTC |
| 1f3dd23 | jdaeth274 | 07 April 2021, 14:54:08 UTC | tweaking for cdc expanded data | 07 April 2021, 14:54:08 UTC |
| 54ed45a | jdaeth274 | 27 January 2021, 16:03:15 UTC | Merge branch 'master' of https://github.com/jdaeth274/pbp_tpd_extraction | 27 January 2021, 16:03:15 UTC |
| 2438603 | jdaeth274 | 27 January 2021, 16:02:47 UTC | switching back to full cdc profiles | 27 January 2021, 16:02:47 UTC |
| d499ab2 | jdaeth274 | 11 January 2021, 15:06:22 UTC | tweaking pbs | 11 January 2021, 15:06:22 UTC |
| 4a66554 | jdaeth274 | 11 January 2021, 15:04:37 UTC | allowing for HMM length mismatch | 11 January 2021, 15:04:37 UTC |
| b554960 | jdaeth274 | 11 January 2021, 15:02:53 UTC | Merge branch 'master' of https://github.com/jdaeth274/pbp_tpd_extraction | 11 January 2021, 15:02:53 UTC |
| 2b567a3 | jdaeth274 | 11 January 2021, 15:02:29 UTC | allowing for HMM length mismatch | 11 January 2021, 15:02:29 UTC |
| dbbd5a3 | jdaeth274 | 07 January 2021, 15:28:58 UTC | tweaking pbs | 07 January 2021, 15:28:58 UTC |
| e7726f8 | jdaeth274 | 07 January 2021, 15:28:01 UTC | pen checker timing updates | 07 January 2021, 15:28:01 UTC |
| fd5cba3 | jdaeth274 | 06 January 2021, 14:55:36 UTC | allowing for no HMM match | 06 January 2021, 14:55:36 UTC |
| 66cb6f7 | jdaeth274 | 05 January 2021, 15:19:12 UTC | tweaking pbs runs | 05 January 2021, 15:19:12 UTC |
| 2de79ad | jdaeth274 | 03 January 2021, 20:24:32 UTC | adding in pbs for co-trim | 03 January 2021, 20:24:32 UTC |
| 9782e3b | jdaeth274 | 02 January 2021, 19:23:00 UTC | adding in tweak to collate gps scripts | 02 January 2021, 19:23:00 UTC |
| 3d8727d | jdaeth274 | 18 December 2020, 20:21:20 UTC | updating blossy changer | 18 December 2020, 20:21:20 UTC |
| 3381c9b | jdaeth274 | 18 December 2020, 17:20:17 UTC | tweaking R and pbs | 18 December 2020, 17:20:17 UTC |
| fb51a0c | jdaeth274 | 18 December 2020, 17:17:55 UTC | removing NAs from aa df | 18 December 2020, 17:17:55 UTC |
| 45dd035 | jdaeth274 | 17 December 2020, 17:55:21 UTC | tweaking python | 17 December 2020, 17:55:21 UTC |
| 47b2e23 | jdaeth274 | 17 December 2020, 17:29:18 UTC | adding in pbs tweaks | 17 December 2020, 17:29:18 UTC |
| 33137f7 | jdaeth274 | 17 December 2020, 17:15:15 UTC | tweaking python | 17 December 2020, 17:15:15 UTC |
| 38f0734 | jdaeth274 | 17 December 2020, 17:08:59 UTC | tweaking python | 17 December 2020, 17:08:59 UTC |
| d1a80ea | jdaeth274 | 17 December 2020, 17:07:08 UTC | tweaking python | 17 December 2020, 17:07:08 UTC |
| e0cb68f | jdaeth274 | 17 December 2020, 16:27:18 UTC | Merge branch 'master' of https://github.com/jdaeth274/pbp_tpd_extraction | 17 December 2020, 16:27:18 UTC |
| 69a046b | jdaeth274 | 17 December 2020, 16:26:55 UTC | tweaking python | 17 December 2020, 16:26:55 UTC |
| 0b528e9 | jdaeth274 | 17 December 2020, 16:25:55 UTC | Merge branch 'master' of https://github.com/jdaeth274/pbp_tpd_extraction | 17 December 2020, 16:25:55 UTC |
| 67bb775 | jdaeth274 | 17 December 2020, 16:25:30 UTC | tweaking python | 17 December 2020, 16:25:30 UTC |
| ecf848b | jdaeth274 | 17 December 2020, 16:13:44 UTC | tweaking python | 17 December 2020, 16:13:44 UTC |
| c4b5509 | jdaeth274 | 17 December 2020, 12:05:14 UTC | tweaking python | 17 December 2020, 12:05:14 UTC |
| 4be6d7e | jdaeth274 | 17 December 2020, 12:00:22 UTC | tweaking python | 17 December 2020, 12:00:22 UTC |
| a95efba | jdaeth274 | 17 December 2020, 11:41:29 UTC | tweaking python | 17 December 2020, 11:41:29 UTC |
| 4a2ed41 | jdaeth274 | 17 December 2020, 11:08:18 UTC | tweaking python | 17 December 2020, 11:08:18 UTC |
| fb4e326 | jdaeth274 | 17 December 2020, 11:05:17 UTC | tweaking python | 17 December 2020, 11:05:17 UTC |
| e5e7bcf | jdaeth274 | 17 December 2020, 10:53:14 UTC | tweaking python | 17 December 2020, 10:53:14 UTC |
| 96c0467 | jdaeth274 | 16 December 2020, 22:43:56 UTC | tweaking python | 16 December 2020, 22:43:56 UTC |
| 2aefc0c | jdaeth274 | 16 December 2020, 22:40:05 UTC | tweaking python | 16 December 2020, 22:40:05 UTC |
| db58c12 | jdaeth274 | 16 December 2020, 22:01:08 UTC | tweaking python | 16 December 2020, 22:01:08 UTC |
| 2e4c3da | jdaeth274 | 16 December 2020, 21:59:06 UTC | tweaking python | 16 December 2020, 21:59:06 UTC |
| 2fe031c | jdaeth274 | 16 December 2020, 21:58:48 UTC | tweaking python | 16 December 2020, 21:58:48 UTC |
| 3c56d5b | jdaeth274 | 16 December 2020, 21:57:06 UTC | tweaking python | 16 December 2020, 21:57:06 UTC |
| 3dde311 | jdaeth274 | 16 December 2020, 21:55:11 UTC | tweaking python | 16 December 2020, 21:55:11 UTC |
| 700a02f | jdaeth274 | 16 December 2020, 21:51:52 UTC | tweaking python file | 16 December 2020, 21:51:52 UTC |
| c460e72 | jdaeth274 | 16 December 2020, 21:47:12 UTC | tweaking python script | 16 December 2020, 21:47:12 UTC |
| 55c4dd4 | nickjcroucher | 13 October 2020, 08:20:21 UTC | Fix co-trimoxazole analyses | 13 October 2020, 08:20:21 UTC |
| f100777 | nickjcroucher | 08 October 2020, 16:25:54 UTC | Adjust hits for HMM offset | 08 October 2020, 16:25:54 UTC |
| 96de4e8 | nickjcroucher | 08 October 2020, 13:43:43 UTC | Fix file paths | 08 October 2020, 13:43:43 UTC |
| 988e3ab | nickjcroucher | 08 October 2020, 11:09:48 UTC | Merge pull request #1 from jdaeth274/master Altering HMM code to run through list of gffs | 08 October 2020, 11:09:48 UTC |
| b104373 | jdaeth274 | 07 October 2020, 13:50:31 UTC | merging in hmmer usage | 07 October 2020, 13:50:31 UTC |
| abc3f08 | jdaeth274 | 07 October 2020, 13:41:45 UTC | modifying HMM code to run on list of gffs | 07 October 2020, 13:41:45 UTC |
| 79fb74b | nickjcroucher | 06 October 2020, 21:27:07 UTC | Add co-trimoxazole profiling | 06 October 2020, 21:27:07 UTC |
| 2ea3805 | jdaeth274 | 16 September 2020, 16:39:58 UTC | updating bash to run non-interactively | 16 September 2020, 16:39:58 UTC |
| 96187e2 | jdaeth274 | 16 September 2020, 15:57:09 UTC | Adding RF R script into bash pipeline, fixing df to series python | 16 September 2020, 15:57:09 UTC |
| 50c0658 | nickjcroucher | 15 September 2020, 16:04:02 UTC | Save output of RF_run | 15 September 2020, 16:04:02 UTC |
| c2a5bea | jdaeth274 | 14 September 2020, 14:49:41 UTC | sorting out merge conflicts in RF_run script | 14 September 2020, 14:49:41 UTC |
| 29024aa | jdaeth274 | 14 September 2020, 14:47:02 UTC | Merge branch 'master' of https://github.com/jdaeth274/pbp_tpd_extraction | 14 September 2020, 14:47:02 UTC |
| 0531ec9 | jdaeth274 | 14 September 2020, 14:41:54 UTC | updating RF_run script to work in bash pipeline | 14 September 2020, 14:41:54 UTC |
| 48d8576 | jdaeth274 | 14 September 2020, 13:24:26 UTC | Merge pull request #1 from nickjcroucher/master Add argparse and subprocess to python code | 14 September 2020, 13:24:26 UTC |
| 2c3402a | nickjcroucher | 09 September 2020, 19:57:31 UTC | Update random forest variables | 09 September 2020, 19:57:31 UTC |
| 9f1650d | nickjcroucher | 09 September 2020, 19:56:48 UTC | Update bash command to match python changes | 09 September 2020, 19:56:48 UTC |
| b662960 | nickjcroucher | 09 September 2020, 12:43:14 UTC | Add argparse and subprocess to python code | 09 September 2020, 12:43:14 UTC |
| 5cda17d | jdaeth274 | 03 September 2020, 13:50:56 UTC | updating readme | 03 September 2020, 13:50:56 UTC |
| 9a16378 | jdaeth274 | 03 September 2020, 13:49:23 UTC | adding in RF script and cdc data file for RF running | 03 September 2020, 13:49:23 UTC |
| 2537dbb | jdaeth274 | 02 September 2020, 18:10:22 UTC | updating readme | 02 September 2020, 18:10:22 UTC |
| 03c5fed | jdaeth274 | 02 September 2020, 18:06:07 UTC | updating README | 02 September 2020, 18:06:07 UTC |
| b1e8d64 | jdaeth274 | 02 September 2020, 17:53:45 UTC | first commit | 02 September 2020, 17:53:45 UTC |
| f65929e | jdaeth274 | 02 September 2020, 17:51:15 UTC | first commit | 02 September 2020, 17:51:15 UTC |
| 20f9853 | jdaeth274 | 02 September 2020, 17:44:56 UTC | first commit | 02 September 2020, 17:44:56 UTC |
