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37381b0 Small fix example 25 November 2020, 17:09:31 UTC
93ac32e Merge branch 'k.czajkowski-master-patch-33445' into 'master' Docstrings for stlmanager.py See merge request AmosEgel/smuthi!63 14 November 2020, 13:11:34 UTC
c76f43a Docstrings for stlmanager.py 14 November 2020, 13:02:55 UTC
60c76ab more meaningful warning at pywigxjpf failure 14 November 2020, 12:55:00 UTC
8704bfb small fixup 14 November 2020, 10:25:22 UTC
e1b8685 some follow up of Krzysztof's MR 14 November 2020, 09:43:33 UTC
253e7c5 Merge branch 'f2pydev' into 'master' Recent F2Py developments See merge request AmosEgel/smuthi!62 14 November 2020, 09:32:05 UTC
42ffff4 Update test_spheroid_closest_points.py - t_matrix_method removed 12 November 2020, 15:47:10 UTC
8bd7e46 Update particles.py - n_rank replaced t_matrix_method. Docstings improved. 12 November 2020, 15:45:59 UTC
1d8dbf4 identical particles dummy implementation 12 November 2020, 15:44:47 UTC
654ff0d Update stlmanager.py - enable arbitrary number of mesh surfaces 12 November 2020, 15:41:44 UTC
23fd251 Update README.rst - add Krzysztof Czajkowski as a contributor 12 November 2020, 15:40:45 UTC
72f838b Add new directory - win for windows encoded files 12 November 2020, 15:40:21 UTC
91a76ea temporary change in old nfmds init 12 November 2020, 15:39:40 UTC
e913fca first step towards anisotropic particles in TNONAXSYM 12 November 2020, 15:36:18 UTC
97c8351 stationary phase approximation 10 November 2020, 13:54:29 UTC
22930c0 doc: neff_resolution and neff_imag 07 November 2020, 09:59:51 UTC
65cb06c Merge branch 'master' into 'master' typo in variable name See merge request AmosEgel/smuthi!61 12 October 2020, 07:33:19 UTC
11aa913 typo in variable name 12 October 2020, 06:35:53 UTC
3409f2a Merge branch 'viz_tweaks' into 'master' suppress matplotlib warnings, add figsize key See merge request AmosEgel/smuthi!59 28 September 2020, 19:41:42 UTC
b0ba7e8 doc: stub for non spherical particles example 28 September 2020, 15:29:04 UTC
7910317 two small fixups 28 September 2020, 11:10:57 UTC
0aab3c1 remove some outdated files 28 September 2020, 10:33:18 UTC
4d85225 fix api section, remove some outdated files 28 September 2020, 10:28:32 UTC
37b60d9 doc for custom particles 28 September 2020, 09:23:58 UTC
d2a440f graphical_output: fix another deprecation warning passing both 'norm' and 'vmin'-'vmax'pairs is also going to be deprecated in future releases of matplotlib 23 September 2020, 14:20:05 UTC
a4647dc graphical_output: add 'figsize' key to set figure size 23 September 2020, 14:20:05 UTC
4186b9c graphical_output: flat shading will be soon deprecated for our use case 23 September 2020, 14:20:05 UTC
4c1b3e0 Merge branch 'develop1' into 'master' modified t-matrix calculation and nonaxsym implementation See merge request AmosEgel/smuthi!58 27 July 2020, 08:08:56 UTC
d64b0a2 changes made to NFMDS are now summarized in readme.txt 25 July 2020, 11:02:50 UTC
a6f81a8 Update indexconverter.py: minor corrections 22 July 2020, 13:40:06 UTC
a8fc50e Update indexconverter.py: added docstrings and removed an unused function for reading taxsym output 22 July 2020, 13:37:09 UTC
4ae40ba Update stlmanager.py 22 July 2020, 13:06:42 UTC
6b51f16 modified t-matrix calculation and nonaxsym implementation added new files for nfmds wrapper updated NFMDS added a simple STL converter modified setup to perform f2py step fixed several bugs in customparticle class extended stl conversion towards many surfaces added proper axially symmetric support reformatted code with PyCharm Delete nfpy3.cpython-36m-x86_64-linux-gnu.so first step towards integration of axisymmetric particles into smuthi improved axisymmetric particle class added win folder with windows encoded files setup.py improvements setup.py with good command for windows fixed paths install works on Win, but takes plenty of time simple example added axisymmetric particle support enabled nfpy3 module is linked as a package data changed installation step order added new implementations of finite cylinder and spheroid finite cylinder and spheroid minor bugfixes numpy distutils removed from setup.py extension works for arbitrary ambient medium nrank can be higher than lmax, for now, assuming that mmax is equal to lmax Update .gitlab-ci.yml Update setup.py Update .gitlab-ci.yml setup updated Update .gitlab-ci.yml Update test_wigner3j.py Obsolete cffi_support module replaced test_t_matrix.py adjusted to new API style first refactoring step taxsym corrected removed t_matrix_axsym references new test added minor bugfix in nfmds test minor bugfix in nfmds test minor bugfix in nfmds test, removed unnecessary prints ds bugfix ds bugfix ds bugfix quadrupole precsion added double precision brought back appendtot refactored refactored names, added docstrings in the particle module Upload encoding_converter for windows Update setup.py for windows Update setup.py Minor stlmanager bugfix corrected example url changes 16 July 2020, 09:29:17 UTC
eb4a1e2 Merge branch 'lorenzo-contrib' into 'master' save also internal field See merge request AmosEgel/smuthi!56 13 July 2020, 10:27:09 UTC
a649399 graphical_output: save also internal field if show_internal_field=True 13 July 2020, 08:43:39 UTC
70a1460 fix typo 13 July 2020, 08:30:02 UTC
2a0350c Merge branch 'param_selection' into 'master' angular resolution selection See merge request AmosEgel/smuthi!54 23 June 2020, 15:12:37 UTC
710cfba Merge branch 'lorenzo-contrib' into 'master' add lgmres solver See merge request AmosEgel/smuthi!55 23 June 2020, 15:11:20 UTC
a2f8f7c linear_system: add gcrotmk solver 09 June 2020, 12:54:09 UTC
1868bf9 automatic_parameter_selection: use default angular arrays functions notes: - the initial angular resolution is taken from the simulation object. In principle, this allows to pass the initial angular resolution value from outside. This is a bit different with respect to how other starting values are fed into the automatic parameter selection routine - as of now, evaluate() is still triggering a simulation run even though the convergence of angular resolution relies mostly on a postprocessing step. However, when the angular resolution is updated, this currently reflects also on the initial field expansion, so it is not strictly wrong to re-run the simulation (even though likely useless practically) 09 June 2020, 10:19:36 UTC
d257ee2 automatic_parameter_selection: ensure enough rel_diff available values otherwise, it is possible that the search is halted prematurely if the first value already falls within the desired tolerance 09 June 2020, 10:19:36 UTC
0ae7270 default angular arrays: add missing docstrings 09 June 2020, 10:19:36 UTC
0904ac7 set default angular resolution to 0.5 degrees all tests still pass 09 June 2020, 10:19:36 UTC
39434ae initial_field, dissipated_power: remove unknown boolean parameter...? apparently this was not causing problems, though 09 June 2020, 10:19:36 UTC
e79969b default angular arrays: keep working on implementation 09 June 2020, 10:19:36 UTC
6fbabeb proposal for default angular arrays: working on implementation 09 June 2020, 10:19:36 UTC
683669f proposal for default angular arrays. implementation still missing 09 June 2020, 10:19:36 UTC
d8a6a92 automatic_parameter_selection: add integrated scattered far field detector 09 June 2020, 10:19:36 UTC
46b80f4 typo 09 June 2020, 10:19:36 UTC
a0a9a02 converge_l_max: fix bug when target_value is specified the 'problem' here was that when a target_value is provided, one can already check l_max=1 against it, instead of waiting for the l_max=2 value to perform the first relative difference calculation. Failing to recognize this was leading to premature termination of the routine (l_max=1 was often selected) despite tolerance_step=2. 09 June 2020, 10:19:36 UTC
636f37c automatic_parameter_selection: add converge_angular_resolution 09 June 2020, 10:19:36 UTC
2d2dec7 let total_scattering_cross_section use the defaul angular arrays 09 June 2020, 10:19:36 UTC
c64c162 automatic_parameter_selection: add a detector relying on angular integration 09 June 2020, 10:19:36 UTC
97bbb33 fix typo 09 June 2020, 10:19:36 UTC
da64cc3 linear_system: add lgmres solver 09 June 2020, 09:36:59 UTC
f7aa7ad internal_field: allow particle.m_max < particle.l_max 09 June 2020, 09:36:59 UTC
d4faa1d Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi.git 09 June 2020, 06:27:47 UTC
3475926 test: small change 09 June 2020, 06:27:36 UTC
87fddad branchpoint correction for initial field contour 09 June 2020, 06:26:42 UTC
32c550e check circumscribing spheres by default 29 May 2020, 05:24:13 UTC
5d530f9 Merge branch 'lorenzo-contrib' into 'master' vectorize circumscribing_sphere_disjoint() See merge request AmosEgel/smuthi!53 28 May 2020, 20:21:42 UTC
b0985b8 vectorize circumscribing_sphere_disjoint() 27 May 2020, 11:57:23 UTC
eaffd15 fixup! avoid MatplotlibDeprecationWarning associated to the use of axes() 25 May 2020, 22:41:59 UTC
56b2d9b Merge branch 'lorenzo-contrib' into 'master' update examples to new graphical output syntax See merge request AmosEgel/smuthi!52 25 May 2020, 05:34:26 UTC
319eb41 avoid MatplotlibDeprecationWarning associated to the use of axes() MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance. 24 May 2020, 21:54:01 UTC
3a2c535 make example scripts compatible with new graphical_output syntax 24 May 2020, 21:41:56 UTC
f777fb4 graphical_output: fix strange behavior with direct calls to show_far_fields when plotting the 'bottom' part, the show_opts variable does not have the value you'd expect. I guess this has something to do with the recursive nature of show_far_fields. This alternative way of handling the show_opts variable is more synthetic and safer against this kind of problems. 24 May 2020, 21:38:57 UTC
b47bd67 graphical_output: fix missing default labels for far-field quantities 24 May 2020, 18:16:12 UTC
84ddd2c check circumscribins spheres - apply Konstantin Ladutenko's code changes 24 May 2020, 08:23:53 UTC
83490ac Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi 24 May 2020, 08:11:26 UTC
1df986b Merge branch 'lorenzo-contrib' into 'master' graphical_output: fix typo and fix bug with LogNorm limits See merge request AmosEgel/smuthi!51 24 May 2020, 07:46:08 UTC
e9dd0be graphical_output: ensure that all plots are shown on show_plots=True 23 May 2020, 18:28:30 UTC
43981ed update example script on automatic parameter selection to comply with the recent changes in graphical output syntax 23 May 2020, 09:41:53 UTC
5218d72 graphical_output: fix typo and fix bug with LogNorm limits 23 May 2020, 09:29:08 UTC
031f551 Merge branch 'lorenzo-contrib' into 'master' automatic_parameter_selection: fix bug when select_neff_max=False See merge request AmosEgel/smuthi!50 23 May 2020, 08:48:08 UTC
6d22e65 automatic_parameter_selection: fix bug when select_neff_max=False 23 May 2020, 08:26:57 UTC
6c8874e Merge branch 'lorenzo-contrib' into 'master' refactoring automatic_parameter_selection See merge request AmosEgel/smuthi!49 23 May 2020, 08:17:56 UTC
f0e5f67 docstring: tiny correction 23 May 2020, 08:10:15 UTC
81a4638 automatic_parameter_selection: grant user access to neff_max_offset starting from a higher value can save quite some time, especially when one is running the selection multiple times (e.g., for every wavelength in a wavelength scan) 23 May 2020, 07:48:11 UTC
00ad816 neff_max_selection: return current_value instead of new_value 23 May 2020, 07:48:11 UTC
67d0064 Apply suggestion to smuthi/utility/automatic_parameter_selection.py 23 May 2020, 07:48:11 UTC
a57b7c2 small change (only in comment) 23 May 2020, 07:48:11 UTC
97b8ed9 delete old automated_lmax_mmax_selection method from particle class 23 May 2020, 07:48:11 UTC
40beb9c automatic_parameter_selection: remember best detector estimate from neff selection the latest detector value obtained during the neff selection routine is our best guess on the 'true' value of the detector since neff selection is typically performed with a smaller allowed tolerance 23 May 2020, 07:48:11 UTC
02744f0 fixup! automatic_parameter_selection: introduce tolerance_steps parameter 22 May 2020, 19:21:17 UTC
6093cf7 fixup! automatic_parameter_selection: introduce tolerance_steps parameter 22 May 2020, 17:45:32 UTC
60cd935 automatic_parameter_selection: update all particles at once 21 May 2020, 19:50:08 UTC
12a14e2 automatic_parameter_selection: introduce tolerance_steps parameter 21 May 2020, 17:10:38 UTC
3c43e08 automatic_parameter_selection: allow used to provide tolerance reduction factor 21 May 2020, 15:03:51 UTC
5599415 Merge branch 'lorenzo-contrib' into 'master' provide replacement for removed numba cffi_support module See merge request AmosEgel/smuthi!48 17 May 2020, 14:11:53 UTC
ed46cb8 provide replacement for removed numba cffi_support module 17 May 2020, 10:59:17 UTC
509b7bb Merge branch 'lorenzo-contrib' into 'master' automatic_parameter_selection: add missing NoneType check on axes object See merge request AmosEgel/smuthi!47 16 May 2020, 08:11:45 UTC
ba0b574 automatic_parameter_selection: add missing NoneType check on axes object 14 May 2020, 18:07:04 UTC
144424f Merge branch 'lorenzo-contrib' into 'master' add optional plotting for automatic parameter selection convergence See merge request AmosEgel/smuthi!46 14 May 2020, 09:02:50 UTC
427f932 automatic_parameter_selection: add missing Args string 13 May 2020, 23:25:39 UTC
4bd6128 automatic_parameter_selection: plot all points, add missing neff_max panels 13 May 2020, 23:20:52 UTC
e340bf4 automatic parameter selection: plot also initial detector value 13 May 2020, 18:56:27 UTC
6372de2 automatic_parameter_selection: fix displayed tolerance value during neff selection 13 May 2020, 18:54:51 UTC
f81da00 minor refactoring 13 May 2020, 16:44:20 UTC
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