38ac198 | Alexey Sergushichev | 10 March 2024, 22:55:01 UTC | Update README.md | 10 March 2024, 22:55:01 UTC |
e96a46a | Alexey Sergushichev | 08 March 2024, 18:13:37 UTC | add unix to suggests (needed for opencpu) | 08 March 2024, 18:13:37 UTC |
51317fc | Alexey Sergushichev | 08 March 2024, 18:09:08 UTC | missed XML dependency | 08 March 2024, 18:09:08 UTC |
261f353 | Alexey Sergushichev | 06 March 2024, 21:29:21 UTC | version bump | 06 March 2024, 21:29:21 UTC |
a9eab9f | Alexey Sergushichev | 23 February 2024, 20:13:08 UTC | fix support for local h5 files in docker | 23 February 2024, 20:13:08 UTC |
39d3c90 | Alexey Sergushichev | 23 February 2024, 18:55:04 UTC | js: main page and minor fixes | 23 February 2024, 18:55:04 UTC |
e85bf92 | Alexey Sergushichev | 22 February 2024, 21:50:37 UTC | Merge branch 'config' | 22 February 2024, 21:50:37 UTC |
220506c | Maksim Kleverov | 22 February 2024, 19:46:41 UTC | remove double trap triger | 22 February 2024, 19:46:41 UTC |
6c756ae | Alexey Sergushichev | 22 February 2024, 03:40:14 UTC | faster download for annot db with compressed files | 22 February 2024, 03:40:14 UTC |
5fe41a7 | Alexey Sergushichev | 22 February 2024, 00:21:45 UTC | updated version and NEWS | 22 February 2024, 00:21:45 UTC |
4c9faaf | Maksim Kleverov | 02 February 2024, 22:24:17 UTC | fix counts path setup and check | 02 February 2024, 22:24:17 UTC |
3771f5b | Maksim Kleverov | 02 February 2024, 20:28:16 UTC | change logo | 02 February 2024, 20:28:16 UTC |
a032ccf | Alexey Sergushichev | 26 January 2024, 20:12:31 UTC | not changing config ownership | 26 January 2024, 20:12:31 UTC |
6995163 | Maksim Kleverov | 26 January 2024, 16:16:08 UTC | fix docker config and nginx cache path | 26 January 2024, 16:16:08 UTC |
7b67a20 | Alexey Sergushichev | 03 January 2024, 20:33:21 UTC | fix chown of config | 03 January 2024, 20:33:21 UTC |
ede9cb2 | Alexey Sergushichev | 15 November 2023, 17:14:01 UTC | Fix documentation warnings | 15 November 2023, 17:14:01 UTC |
2eca27a | Alexey Sergushichev | 15 November 2023, 16:31:37 UTC | Merge remote-tracking branch 'upstream/master' | 15 November 2023, 16:31:37 UTC |
985c337 | Maksim Kleverov | 08 November 2023, 19:50:30 UTC | use BiocManager version of hdf5client and phantasusLite | 08 November 2023, 19:50:30 UTC |
b662f86 | Maksim Kleverov | 07 November 2023, 20:01:01 UTC | fix R version and bind preloaded | 07 November 2023, 20:01:01 UTC |
c191786 | Maksim Kleverov | 07 November 2023, 19:58:18 UTC | Get version with bugfixes | 07 November 2023, 19:58:18 UTC |
db478e6 | Maksim Kleverov | 07 November 2023, 19:11:29 UTC | JS fix: tmm and limma | 07 November 2023, 19:11:29 UTC |
ce645a8 | Maksim Kleverov | 07 November 2023, 19:08:35 UTC | save voom weights | 07 November 2023, 19:08:35 UTC |
5869a68 | Maksim Kleverov | 06 November 2023, 21:18:32 UTC | fix citation and add phantasusLite to deps | 06 November 2023, 21:18:32 UTC |
8e3f4d4 | Maksim Kleverov | 02 November 2023, 14:42:46 UTC | works with empty conuts folder | 02 November 2023, 14:42:46 UTC |
6ec69be | Maksim Kleverov | 01 November 2023, 21:28:48 UTC | add counts meta generation in setup | 01 November 2023, 21:28:48 UTC |
3eaf52a | Maksim Kleverov | 30 October 2023, 16:54:45 UTC | add compose and env files | 30 October 2023, 16:54:45 UTC |
a05bba3 | Maksim Kleverov | 27 October 2023, 14:49:01 UTC | fix validity check | 27 October 2023, 14:49:01 UTC |
8316163 | Maksim Kleverov | 27 October 2023, 13:33:20 UTC | main brranch of phantasusLite | 27 October 2023, 13:33:20 UTC |
0ef1c39 | Maksim Kleverov | 27 October 2023, 13:30:53 UTC | create docker conf | 27 October 2023, 13:30:53 UTC |
9be9aa5 | Maksim Kleverov | 27 October 2023, 13:29:18 UTC | add setup for docker | 27 October 2023, 13:29:18 UTC |
42fae58 | J Wokaty | 24 October 2023, 15:03:44 UTC | bump x.y.z version to odd y following creation of RELEASE_3_18 branch | 24 October 2023, 15:03:44 UTC |
ccd60dd | J Wokaty | 24 October 2023, 15:03:44 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_18 branch | 24 October 2023, 15:03:44 UTC |
9155900 | Maksim Kleverov | 23 October 2023, 19:27:52 UTC | Merge remote-tracking branch 'origin/master' into config | 23 October 2023, 19:27:52 UTC |
62c3b9d | Maksim Kleverov | 23 October 2023, 19:23:17 UTC | get actual version | 23 October 2023, 19:23:17 UTC |
9757581 | Alexey Sergushichev | 23 October 2023, 16:15:32 UTC | Fix manual pdf build | 23 October 2023, 16:15:32 UTC |
6d06d2c | Alexey Sergushichev | 19 October 2023, 16:14:55 UTC | remove outdated badges | 19 October 2023, 16:14:55 UTC |
4f8848b | Alexey Sergushichev | 19 October 2023, 16:13:10 UTC | remove bioccheck & codecov | 19 October 2023, 16:13:10 UTC |
73fa89e | Alexey Sergushichev | 18 October 2023, 21:55:09 UTC | delete static release.js Merge-request: PHANTASUS-MR-37 Merged-by: Alexey Sergushichev <alserg@itmo.ru> | 18 October 2023, 21:55:09 UTC |
d999a1e | Maksim Kleverov | 18 October 2023, 19:22:03 UTC | some fixes | 18 October 2023, 19:22:03 UTC |
35546c2 | Maksim Kleverov | 16 October 2023, 18:24:59 UTC | fix docker | 16 October 2023, 18:24:59 UTC |
ee13f22 | Maksim Kleverov | 10 October 2023, 20:36:03 UTC | try new docker | 10 October 2023, 20:36:03 UTC |
156c0c8 | Maksim Kleverov | 09 October 2023, 16:48:23 UTC | add / to counts paths | 09 October 2023, 16:48:23 UTC |
b0bef47 | Maksim Kleverov | 04 October 2023, 18:35:34 UTC | paste0 | 04 October 2023, 18:35:34 UTC |
5af5519 | Maksim Kleverov | 03 October 2023, 18:36:05 UTC | remove phantasusLite from suggestions | 03 October 2023, 18:36:05 UTC |
1baa711 | Maksim Kleverov | 03 October 2023, 18:30:15 UTC | add hsds, change default path | 03 October 2023, 18:30:15 UTC |
7ac14ad | Maksim Kleverov | 21 September 2023, 17:47:31 UTC | use correct mirror fro js | 21 September 2023, 17:47:31 UTC |
6941fe5 | Maksim Kleverov | 21 September 2023, 17:40:46 UTC | try to set global vars | 21 September 2023, 17:40:46 UTC |
92fd4ec | Maksim Kleverov | 21 September 2023, 17:27:32 UTC | -r cp oprion in tests | 21 September 2023, 17:27:32 UTC |
490a788 | Maksim Kleverov | 21 September 2023, 17:11:03 UTC | syntax fix | 21 September 2023, 17:11:03 UTC |
6f35b21 | Maksim Kleverov | 21 September 2023, 17:01:20 UTC | add conf for js tests | 21 September 2023, 17:01:20 UTC |
4c95951 | Maksim Kleverov | 20 September 2023, 21:06:33 UTC | fix annotdb test | 20 September 2023, 21:06:33 UTC |
358c234 | Maksim Kleverov | 20 September 2023, 20:46:17 UTC | change conf path | 20 September 2023, 20:46:17 UTC |
990786e | Maksim Kleverov | 20 September 2023, 20:09:40 UTC | use another conf for tests | 20 September 2023, 20:09:40 UTC |
23a46a2 | Maksim Kleverov | 20 September 2023, 19:33:44 UTC | fix counts test | 20 September 2023, 19:33:44 UTC |
da3d853 | Maksim Kleverov | 20 September 2023, 19:20:23 UTC | fix another gct test | 20 September 2023, 19:20:23 UTC |
b87474e | Alexey Sergushichev | 20 September 2023, 19:20:22 UTC | fix wrong order of cells after TMM and voom | 20 September 2023, 19:20:22 UTC |
848c839 | Maksim Kleverov | 20 September 2023, 18:56:03 UTC | try create dir before writing | 20 September 2023, 18:56:03 UTC |
de664d8 | Maksim Kleverov | 18 September 2023, 20:56:13 UTC | "donotrun" loadgeo methods | 18 September 2023, 20:56:13 UTC |
d1c4bb8 | Maksim Kleverov | 18 September 2023, 20:40:15 UTC | add second test conf | 18 September 2023, 20:40:15 UTC |
61d8cde | Maksim Kleverov | 18 September 2023, 19:44:01 UTC | change docs | 18 September 2023, 19:44:01 UTC |
1d42c3b | Maksim Kleverov | 18 September 2023, 19:20:38 UTC | try to fix tests | 18 September 2023, 19:20:38 UTC |
87a2ff1 | Maksim Kleverov | 07 September 2023, 19:44:30 UTC | add user config | 07 September 2023, 19:44:30 UTC |
e44ad01 | Maksim Kleverov | 05 September 2023, 20:32:34 UTC | working setup | 05 September 2023, 20:32:34 UTC |
b5e2b59 | Maksim Kleverov | 05 September 2023, 17:59:51 UTC | annotdb setup working | 05 September 2023, 17:59:51 UTC |
3e0a250 | Alexey Sergushichev | 05 September 2023, 17:35:54 UTC | fix dataset problem in JS | 05 September 2023, 17:35:54 UTC |
abd6053 | Maksim Kleverov | 05 September 2023, 16:02:42 UTC | something not finished | 05 September 2023, 16:02:42 UTC |
882d3b8 | Alexey Sergushichev | 29 August 2023, 20:12:32 UTC | bump version to 1.21.4 | 29 August 2023, 20:12:32 UTC |
4bff9c7 | Alexey Sergushichev | 16 August 2023, 20:20:42 UTC | update js - fix gct parsing | 16 August 2023, 20:20:42 UTC |
efb5f4e | Maksim Kleverov | 16 August 2023, 19:07:32 UTC | config first version | 16 August 2023, 19:07:32 UTC |
f87ef2d | Alexey Sergushichev | 02 August 2023, 03:57:04 UTC | Merge PHANTASUS-MR-35: new_normalizations | 02 August 2023, 03:57:04 UTC |
b6dac95 | Maksim Kleverov | 02 August 2023, 00:57:28 UTC | fix limma tests | 02 August 2023, 00:57:28 UTC |
b3a8e0a | Alexey Sergushichev | 01 August 2023, 22:09:34 UTC | fixup! more version fixes | 01 August 2023, 22:09:34 UTC |
3b86c80 | Alexey Sergushichev | 01 August 2023, 21:54:51 UTC | Merge branch 'master' into new_normalizations | 01 August 2023, 21:54:51 UTC |
385c1aa | Alexey Sergushichev | 01 August 2023, 21:53:55 UTC | fixup! versions corrected | 01 August 2023, 21:53:55 UTC |
106984a | Alexey Sergushichev | 01 August 2023, 21:50:56 UTC | NEWS update | 01 August 2023, 21:50:56 UTC |
407fb2e | Alexey Sergushichev | 01 August 2023, 21:50:45 UTC | JS update | 01 August 2023, 21:50:45 UTC |
18b4fc4 | Maksim Kleverov | 01 August 2023, 15:33:41 UTC | remove test print | 01 August 2023, 15:33:41 UTC |
496fb3d | Maksim Kleverov | 31 July 2023, 21:15:54 UTC | works with strange factor names and levels | 31 July 2023, 21:15:54 UTC |
b8cbb40 | Maksim Kleverov | 28 July 2023, 18:50:33 UTC | document_update | 28 July 2023, 18:50:33 UTC |
db5fb84 | Maksim Kleverov | 28 July 2023, 18:24:51 UTC | add packages | 28 July 2023, 18:24:51 UTC |
b60858a | Maksim Kleverov | 26 July 2023, 16:13:57 UTC | optional filter and cpm for voom and tmm | 26 July 2023, 16:13:57 UTC |
11478e1 | Maksim Kleverov | 25 July 2023, 19:05:14 UTC | bugfixes in hdf5 reading and meta generation | 25 July 2023, 19:05:14 UTC |
7f2eedc | Maksim Kleverov | 07 July 2023, 20:48:32 UTC | add advanced design to limma | 07 July 2023, 20:48:32 UTC |
b7efd45 | Maksim Kleverov | 22 June 2023, 19:15:40 UTC | archs4_v2.2 support, changed meta.txt format Co-authored-by: Maksim Kleverov <klevermx@gmail.com> Merge-request: PHANTASUS-MR-32 Merged-by: Alexey Sergushichev <alserg@itmo.ru> | 22 June 2023, 19:15:40 UTC |
c9eeb0f | Maksim Kleverov | 17 May 2023, 18:10:13 UTC | add voom and deseq with design | 17 May 2023, 18:10:13 UTC |
f0f0575 | Alexey Sergushichev | 26 April 2023, 15:59:19 UTC | Merge remote-tracking branch 'space/master' | 26 April 2023, 15:59:19 UTC |
cfcacbe | Alexey Sergushichev | 26 April 2023, 15:57:20 UTC | version fix | 26 April 2023, 15:57:20 UTC |
5524cc3 | J Wokaty | 25 April 2023, 15:00:13 UTC | bump x.y.z version to odd y following creation of RELEASE_3_17 branch | 25 April 2023, 15:00:13 UTC |
d248b1e | J Wokaty | 25 April 2023, 15:00:13 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_17 branch | 25 April 2023, 15:00:13 UTC |
e90ae31 | Maksim Kleverov | 19 April 2023, 07:16:58 UTC | fix brief loading | 19 April 2023, 07:16:58 UTC |
6409ba3 | Maksim Kleverov | 19 April 2023, 06:58:33 UTC | voom normalization first version | 19 April 2023, 06:58:33 UTC |
bbadc3c | Maksim Kleverov | 13 March 2023, 19:05:53 UTC | add tmm normalization | 13 March 2023, 19:05:53 UTC |
489aa7a | Alexey Sergushichev | 21 December 2022, 22:25:09 UTC | citation | 21 December 2022, 22:25:09 UTC |
451ce06 | Alexey Sergushichev | 13 December 2022, 12:07:43 UTC | ShinyGAM -> ShinyGATOM | 13 December 2022, 12:21:04 UTC |
a344bd0 | Alexey Sergushichev | 03 November 2022, 18:51:22 UTC | version fix | 03 November 2022, 18:51:22 UTC |
ad8fdc4 | Alexey Sergushichev | 28 October 2022, 23:35:30 UTC | increased nginx buffer sizes | 01 November 2022, 20:38:36 UTC |
8ba08db | J Wokaty | 01 November 2022, 15:17:23 UTC | bump x.y.z version to odd y following creation of RELEASE_3_16 branch | 01 November 2022, 15:17:23 UTC |
bd60368 | J Wokaty | 01 November 2022, 15:17:23 UTC | bump x.y.z version to even y prior to creation of RELEASE_3_16 branch | 01 November 2022, 15:17:23 UTC |
7b78680 | Alexey Sergushichev | 27 October 2022, 01:03:03 UTC | js update + version bump | 27 October 2022, 01:03:03 UTC |
2f82e1f | Alexey Sergushichev | 27 October 2022, 00:53:41 UTC | keep all annotations if no genes detected, fix #155 | 27 October 2022, 00:53:41 UTC |