https://github.com/connor-lab/ncov2019-artic-nf
Revision 39bd87174c1dab67efdb898d066ed616d486d42f authored by Thanh Lê on 21 April 2020, 14:42:29 UTC, committed by GitHub on 21 April 2020, 14:42:29 UTC
update regex search for nanoporeBarcodeDirs so it can detect: barcode1 barcode01 barcode001 barcode0001
1 parent 6feedcd
Tip revision: 39bd87174c1dab67efdb898d066ed616d486d42f authored by Thanh Lê on 21 April 2020, 14:42:29 UTC
update regex search for nanoporeBarcodeDirs (#34)
update regex search for nanoporeBarcodeDirs (#34)
Tip revision: 39bd871
Singularity.artic-ncov2019-nanopolish
Bootstrap: docker
From: continuumio/miniconda3:latest
%files
environment.yml /
%labels
authors="Matt Bull"
description="Docker image containing all requirements for the ARTIC project's ncov2019 pipeline"
%post
apt-get update && apt-get install -y g++ git make procps rsync && apt-get clean -y
/opt/conda/bin/conda env create -f /environment.yml && /opt/conda/bin/conda clean -a
PATH=/opt/conda/envs/fieldbioinformatics/bin:$PATH
%environment
export PATH=/opt/conda/envs/fieldbioinformatics/bin:$PATH
%runscript
exec "/opt/conda/envs/fieldbioinformatics/bin/artic" "$@"
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