https://github.com/ctlab/phantasus
Revision 3b86c80ea2da014034dcb987653fd4c9f0b765ca authored by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC, committed by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC
Tip revision: 3b86c80ea2da014034dcb987653fd4c9f0b765ca authored by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC
Merge branch 'master' into new_normalizations
Merge branch 'master' into new_normalizations
Tip revision: 3b86c80
collapseDataset.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/collapseDataset.R
\name{collapseDataset}
\alias{collapseDataset}
\title{Collapse dataset}
\usage{
collapseDataset(
es,
isRows = TRUE,
selectOne = FALSE,
fn,
fields,
removeEmpty = TRUE
)
}
\arguments{
\item{es}{Expression set}
\item{isRows}{Work with rows. False if columns (default True - row mode)}
\item{selectOne}{select best match or merge duplicates}
\item{fn}{select/merge function}
\item{fields}{fields to unique on}
\item{removeEmpty}{remove unannotated genes}
}
\value{
Nothing. Collapsed dataset will be assigned to es in environment
}
\description{
\code{collapseDataset} performs a collapse action on expression set
}
\examples{
\dontrun{
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))
}
}
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