https://github.com/ctlab/phantasus
Revision 3b86c80ea2da014034dcb987653fd4c9f0b765ca authored by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC, committed by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC
Tip revision: 3b86c80ea2da014034dcb987653fd4c9f0b765ca authored by Alexey Sergushichev on 01 August 2023, 21:54:51 UTC
Merge branch 'master' into new_normalizations
Merge branch 'master' into new_normalizations
Tip revision: 3b86c80
convertByAnnotationDB.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/convertByAnnotationDB.R
\name{convertByAnnotationDB}
\alias{convertByAnnotationDB}
\title{Map indexes using Annotation DB}
\usage{
convertByAnnotationDB(
es,
dbName,
columnName,
columnType,
keyType,
otherOptions
)
}
\arguments{
\item{es}{source ExpressionSet}
\item{dbName}{name of AnnotationDB file}
\item{columnName}{name of column in featureData of source ExpressionSet}
\item{columnType}{Type of indexes in columnName}
\item{keyType}{Type of mapped indexes}
\item{otherOptions}{additional parameters for conversion. Currently only named boolean deleteDotVersion is not ignored.}
}
\value{
JSON object with a vector of converted IDs
}
\description{
\code{createES} function creates an rds file containing meta information of
provided sqlite files for AnnotationDB
}
\examples{
\dontrun{
}
}
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