Revision 3c861479b3aa9598a83ae056d36b15531365d45b authored by Tito Dal Canton on 22 May 2017, 20:43:17 UTC, committed by GitHub on 22 May 2017, 20:43:17 UTC
* Trivial fixes * Missing print() parentheses * Incompatible but unused import * xrange -> range * str/bytes issue in check for nvidia module * Tuple arg in chisq_cuda * ConfigParser import and dict concatenation * Safer call to unit test scripts * Removed unused imports to make codacy happy
1 parent d70e575
test_injection.py
# Copyright (C) 2013 Tito Dal Canton, Josh Willis
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
"""
Unit test for PyCBC's injection module.
"""
import tempfile
import lal
import pycbc
from pycbc.types import TimeSeries
from pycbc.detector import Detector
from pycbc.inject import InjectionSet
import unittest
import numpy
import itertools
from pycbc_glue.ligolw import ligolw
from pycbc_glue.ligolw import lsctables
from pycbc_glue.ligolw import utils
from utils import parse_args_cpu_only, simple_exit
# Injection tests only need to happen on the CPU
parse_args_cpu_only("Injections")
class MyInjection(object):
def fill_sim_inspiral_row(self, row):
# using dummy values for many fields, should work for our purposes
row.waveform = 'TaylorT4threePointFivePN'
row.distance = self.distance
total_mass = self.mass1 + self.mass2
row.mass1 = self.mass1
row.mass2 = self.mass2
row.eta = self.mass1 * self.mass2 / total_mass ** 2
row.mchirp = total_mass * row.eta ** (3. / 5.)
row.latitude = self.latitude
row.longitude = self.longitude
row.inclination = self.inclination
row.polarization = self.polarization
row.phi0 = 0
row.f_lower = 20
row.f_final = lal.C_SI ** 3 / \
(6. ** (3. / 2.) * lal.PI * lal.G_SI * total_mass)
row.spin1x = row.spin1y = row.spin1z = 0
row.spin2x = row.spin2y = row.spin2z = 0
row.alpha1 = 0
row.alpha2 = 0
row.alpha3 = 0
row.alpha4 = 0
row.alpha5 = 0
row.alpha6 = 0
row.alpha = 0
row.beta = 0
row.theta0 = 0
row.psi0 = 0
row.psi3 = 0
row.geocent_end_time = int(self.end_time)
row.geocent_end_time_ns = int(1e9 * (self.end_time - row.geocent_end_time))
row.end_time_gmst = lal.GreenwichMeanSiderealTime(
lal.LIGOTimeGPS(self.end_time))
for d in 'lhvgt':
row.__setattr__('eff_dist_' + d, row.distance)
row.__setattr__(d + '_end_time', row.geocent_end_time)
row.__setattr__(d + '_end_time_ns', row.geocent_end_time_ns)
row.amp_order = 0
row.coa_phase = 0
row.bandpass = 0
row.taper = self.taper
row.numrel_mode_min = 0
row.numrel_mode_max = 0
row.numrel_data = None
row.source = 'ANTANI'
class TestInjection(unittest.TestCase):
def setUp(self):
self.detectors = [Detector(d) for d in ['H1', 'L1', 'V1']]
self.sample_rate = 4096.
self.earth_time = lal.REARTH_SI / lal.C_SI
# create a few random injections
self.injections = []
start_time = float(lal.GPSTimeNow())
taper_choices = ('TAPER_NONE', 'TAPER_START', 'TAPER_END', 'TAPER_STARTEND')
for i, taper in zip(xrange(20), itertools.cycle(taper_choices)):
inj = MyInjection()
inj.end_time = start_time + 40000 * i + \
numpy.random.normal(scale=3600)
random = numpy.random.uniform
inj.mass1 = random(low=1., high=20.)
inj.mass2 = random(low=1., high=20.)
inj.distance = random(low=0.9, high=1.1) * 1e6 * lal.PC_SI
inj.latitude = numpy.arccos(random(low=-1, high=1))
inj.longitude = random(low=0, high=2 * lal.PI)
inj.inclination = numpy.arccos(random(low=-1, high=1))
inj.polarization = random(low=0, high=2 * lal.PI)
inj.taper = taper
self.injections.append(inj)
# create LIGOLW document
xmldoc = ligolw.Document()
xmldoc.appendChild(ligolw.LIGO_LW())
# create sim inspiral table, link it to document and fill it
sim_table = lsctables.New(lsctables.SimInspiralTable)
xmldoc.childNodes[-1].appendChild(sim_table)
for i in xrange(len(self.injections)):
row = sim_table.RowType()
self.injections[i].fill_sim_inspiral_row(row)
row.process_id = 'process:process_id:0'
row.simulation_id = 'sim_inspiral:simulation_id:%d' % i
sim_table.append(row)
# write document to temp file
self.inj_file = tempfile.NamedTemporaryFile(suffix='.xml')
utils.write_fileobj(xmldoc, self.inj_file)
def test_injection_presence(self):
"""Verify presence of signals at expected times"""
injections = InjectionSet(self.inj_file.name)
for det in self.detectors:
for inj in self.injections:
ts = TimeSeries(numpy.zeros(int(10 * self.sample_rate)),
delta_t=1/self.sample_rate,
epoch=lal.LIGOTimeGPS(inj.end_time - 5),
dtype=numpy.float64)
injections.apply(ts, det.name)
max_amp, max_loc = ts.abs_max_loc()
# FIXME could test amplitude and time more precisely
self.assertTrue(max_amp > 0 and max_amp < 1e-10)
time_error = ts.sample_times.numpy()[max_loc] - inj.end_time
self.assertTrue(abs(time_error) < 2 * self.earth_time)
def test_injection_absence(self):
"""Verify absence of signals outside known injection times"""
clear_times = [
self.injections[0].end_time - 86400,
self.injections[-1].end_time + 86400
]
injections = InjectionSet(self.inj_file.name)
for det in self.detectors:
for epoch in clear_times:
ts = TimeSeries(numpy.zeros(int(10 * self.sample_rate)),
delta_t=1/self.sample_rate,
epoch=lal.LIGOTimeGPS(epoch),
dtype=numpy.float64)
injections.apply(ts, det.name)
max_amp, max_loc = ts.abs_max_loc()
self.assertEqual(max_amp, 0)
suite = unittest.TestSuite()
suite.addTest(unittest.TestLoader().loadTestsFromTestCase(TestInjection))
if __name__ == '__main__':
results = unittest.TextTestRunner(verbosity=2).run(suite)
simple_exit(results)
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