https://github.com/przemyslawj/ach-effect-on-hpc

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Revision Author Date Message Commit Date
3d4f5f8 eLife revision: individual plots for learning curves; single trial spectrogram; extra stats on y-maze ripples 22 February 2021, 14:40:41 UTC
247675a Write source data for figures to files 19 December 2020, 12:32:07 UTC
a31e800 Added logpower diff calculation between day-averaged stim on and off ymaze trials; changes to plots 18 December 2020, 07:58:13 UTC
f87640d Figures update for resubmission 11 November 2020, 22:10:52 UTC
4793a04 Changed ymaze periods to consider only time before left goal; ymaze ripples for new data 18 September 2020, 18:04:48 UTC
37a6f68 Changes following new baseline recordings 03 September 2020, 12:09:38 UTC
c6487a4 Removed unused coherence code 13 August 2020, 09:58:33 UTC
fc45260 Changed the mixed-effects models to compare control and main effect experiments 06 August 2020, 20:22:30 UTC
1831f34 Support for control-gfp experiments 29 July 2020, 14:37:31 UTC
77b7b71 Merge branch 'master' of https://github.com/przemyslawj/ach-effect-on-hpc 14 May 2020, 19:57:51 UTC
657f6aa Updated paths; removed unused 14 May 2020, 19:57:07 UTC
0b02301 Updated README 13 May 2020, 20:01:01 UTC
2db4848 Refactored common code to individual R scripts 30 April 2020, 15:01:20 UTC
e791062 Reorganized dir structure; removed old, unused analysis code 30 April 2020, 10:44:17 UTC
1b2e720 Code cleanup 30 April 2020, 10:35:55 UTC
8cc0580 Complementary changes when writing up the results 28 April 2020, 15:20:49 UTC
f6d5c8f Fit background spectrum for low and high frequencies seperetaly 23 April 2020, 14:32:55 UTC
a6a8c8b Added matlab scripts to use welch PSD estimate; estimation of PSD background using FOOOF package 23 April 2020, 06:34:53 UTC
3f462f4 Changed trial_coherence to be calculated on Welch PSD; publication ready plots for ymaze learning, ymaze ripples and PSD 15 April 2020, 16:08:07 UTC
5f434b8 Generalized plotting of the ripples for baseline recordings; updated PSD and ymaze plots 10 April 2020, 10:13:38 UTC
225953d Extended the calculated PSD bands to 250 Hz 04 April 2020, 10:07:13 UTC
4f7e097 Plotting of coherence and day average spectrogram for sleep trials 04 April 2020, 08:11:36 UTC
7fca130 Plotting avg coherence; stats on coherence during sleep 03 April 2020, 15:39:04 UTC
6c30998 Added calculation of CA1-CA3 coherence 03 April 2020, 09:12:26 UTC
66f9767 Split R notebooks into psd and ripple specific; added some stats analysis 02 April 2020, 13:37:08 UTC
38d8e4d Plotting of day-averaged spectrogram; ymaze psd analysis 31 March 2020, 12:32:05 UTC
f496f1c excluded periods with noise identified in EMG signal from the analysis, added script to plot exerpts with detected rippples 30 March 2020, 07:40:09 UTC
6ca6704 WIP: analysis of ymaze ripples 25 March 2020, 15:28:41 UTC
af5f364 Processing of diode signal 23 March 2020, 11:42:29 UTC
1758680 Unify logic for selecting the channels to plot 13 November 2019, 19:42:39 UTC
9f749d5 Changed Plotting script to plot the signal using channel information 13 November 2019, 13:27:52 UTC
04efa45 added summarising of SWRs and PSD for diode recordings 04 October 2019, 12:38:33 UTC
88459d0 Subtracted the diode signal 02 October 2019, 15:18:45 UTC
ee49c6e Added gitignore 02 October 2019, 08:43:26 UTC
c818750 Added multielectrode plot for SWRs 01 October 2019, 14:10:53 UTC
ff66cc1 Added zoom to show traces on PlotMultipleElectrodeSignal 01 October 2019, 09:48:14 UTC
5ac7fed Added support for plotting using channel table 25 September 2019, 16:15:08 UTC
e81f1a4 Changes for the first submission 25 September 2019, 13:19:33 UTC
99161c1 Analysis with linear mixed effects models 08 May 2019, 13:20:31 UTC
910b08c Added new version of analysis scripts for Nigel and Albert data 26 March 2019, 14:27:02 UTC
b1abbf8 Updated Readme.md; some changes in ripple analysis 20 March 2019, 13:23:54 UTC
8779e59 Added analysis of urethane mice 24 January 2019, 16:27:05 UTC
2dfbfa6 Fixed SWR threshold and updated analysis 23 January 2019, 11:12:53 UTC
41633a1 Added analysis of the 2018-08; refined the plotting analysis code, restructured the subdirectories 11 January 2019, 11:04:09 UTC
605d2a9 Updated the scripts for 21 channels 16 August 2018, 11:28:53 UTC
5ac534e Added r noteboook for ymaze behav analysis 10 April 2018, 10:39:44 UTC
f0a2fd9 More work on figures 06 April 2018, 16:40:25 UTC
f747307 Changes in stats figures 05 April 2018, 23:41:49 UTC
c6bb83c Added more test data, fixed a few bugs in PSD analysis, added ymaze SWRs analysis 05 April 2018, 19:02:24 UTC
1f8b123 Changed slow gamma bandpass, more statistics on y-maze 03 April 2018, 17:08:18 UTC
1d130c5 Added code for plotting y-maze task spectrogram, modified analysis for y-maze. 30 March 2018, 16:54:11 UTC
fe052af Added more stats analysis for rest 28 March 2018, 16:10:06 UTC
4c39996 More analysis on psd and swrs during rest periods 23 March 2018, 15:17:47 UTC
40d8fc6 Added variables of the pow + swr for statistical comparison of ON and OFF laser periods 08 March 2018, 10:03:43 UTC
b1bfa84 Initial commit 05 March 2018, 18:36:48 UTC
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