Revision 3de97a44ed61e8caa417ddb3d23791f95b53313d authored by James Foucar on 13 April 2022, 22:19:57 UTC, committed by James Foucar on 13 April 2022, 22:19:57 UTC
1 parent 5752303
ChangeLog
======================================================================
Originatorr: Chris Fischer
Date: 3-25-2022
Tag: cime6.0.16
Answer Changes: all active cice cases, same climate
Tests: scripts_regression_tests, aux_cice
Dependencies:
Brief Summary:
- Fix run_tests.py when no machine is given.
- Changes to CIME to make CICE6 the default component
- Bump pillow from 9.0.0 to 9.0.1 in pyCECT documents.
- Only clear baselines when run_count is 0 and -o is used.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
0b89e444d Merge pull request #4203 from billsacks/run_tests_no_explicit_machine
62fede4fd Merge pull request #4172 from dabail10/cime_cice6
b3d4147ff Merge pull request #4196 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-9.0.1
ff645a6d9 Merge pull request #4197 from ESMCI/fischer/retryruncount
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-1-2022
Tag: cime6.0.14
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Needed some non-local flags added.
- Allow unbounded compilers to modify max tasks per node.
- Fix for correct path for PTS_DOMAINFILE.
- Check current machine and exit if not case machine.
- Use of optional .exclude files for selective exclusion during build.
- Automate documentation.
- Changes for implementing nemo in cesm2.3.
- Need to move version check out of utils.py.
- Update tests to get status from new EVV output.
- Remove the remaining users of config_compilers.xml.
- Reorder fox libraries for nvhpc.
- Add missing doctest.
- Fixes for a number of fails in scripts_regression for e3sm on mappy.
- Update grids.rst, removing $CCSMROOT references.
- Remove test_release from test_categories.
- Bump pillow from 8.3.2 to 9.0.0 in /tools/statistical_ensemble_test/pyCECT/docs.
- Fix removing test directories on failure.
- Remove rather than overwrite baseline contents with the create_test -o flag.
- Remove trailing whitespace
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
fa02da2ae Merge pull request #4185 from ESMCI/jgfouca/fix_e3sm_tests
bbd38af81 Merge pull request #4184 from ESMCI/azamat/modify-max-unbounded-compilers
0fda6b095 Merge pull request #4183 from mvertens/feature/fix_scam
ac3cd93ce Merge pull request #4179 from jedwards4b/check_current_machine
2bb0deea6 Merge pull request #4180 from CESM-GC/feature/file_build_exclude_list
4f9ce69d2 Merge pull request #4177 from jasonb5/automate_docs
108b0cc25 Merge pull request #4170 from ESMCI/peano/nemo_port
2c4e6fc3e Merge pull request #4168 from jedwards4b/move_version_check
726136e78 Merge pull request #4166 from ESMCI/mkstratos/evv_fix
7d0ef4b30 Merge pull request #4161 from ESMCI/jgfouca/remove_remaining_users_of_compilers_xml
11fb0364b reorder fox libraries for nvhpc
3f2fe1ab8 Merge pull request #4159 from jasonb5/add_missing_doctest
6dde219c8 Merge pull request #4156 from ESMCI/jgfouca/e3sm_fixes
433bdeaac Merge pull request #4147 from johnsonbk/fix_ccsmroot_references
a4d865847 Merge pull request #4155 from ESMCI/jgfouca/remove_test_release
ff92490f6 Merge pull request #4158 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-9.0.0
334f5622b Merge pull request #4157 from jasonb5/fix_test_directory_removal
83cc09df4 Merge pull request #4154 from jedwards4b/remove_not_overwrite_baseline
dd17a1543 Remove trailing whitespace
Modified files: git diff --name-status [previous_tag]
A .github/workflows/docs.yml
M ChangeLog
M config/xml_schemas/config_machines.xsd
A doc/requirements.txt
M doc/source/conf.py
M doc/source/index.rst
M doc/source/users_guide/grids.rst
M doc/source/xml_files/cesm.rst
M doc/source/xml_files/e3sm.rst
M doc/source/xml_files/index.rst
M doc/tools_autodoc.py
M scripts/Tools/Makefile
M scripts/Tools/case.setup
M scripts/Tools/mkDepends
M scripts/Tools/mkSrcfiles
M scripts/Tools/standard_script_setup.py
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/funit.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/README
M scripts/lib/CIME/tests/base.py
M scripts/lib/CIME/tests/scripts_regression_tests.py
M scripts/lib/CIME/tests/test_sys_bless_tests_results.py
M scripts/lib/CIME/tests/test_sys_cime_case.py
M scripts/lib/CIME/tests/test_sys_cmake_macros.py
M scripts/lib/CIME/tests/test_sys_create_newcase.py
M scripts/lib/CIME/tests/test_sys_grid_generation.py
M scripts/lib/CIME/tests/test_sys_jenkins_generic_job.py
M scripts/lib/CIME/tests/test_sys_macro_basic.py
M scripts/lib/CIME/tests/test_sys_make_macros.py
M scripts/lib/CIME/tests/test_sys_test_scheduler.py
M scripts/lib/CIME/tests/test_sys_unittest.py
M scripts/lib/CIME/tests/test_unit_case.py
A scripts/lib/CIME/tests/test_unit_doctest.py
R100 scripts/lib/CIME/tests/test_xml_env_batch.py scripts/lib/CIME/tests/test_unit_xml_env_batch.py
M scripts/lib/CIME/tests/utils.py
M scripts/lib/CIME/utils.py
M tools/cprnc/README
M tools/mapping/gen_domain_files/test_gen_domain.sh
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 1-11-22
Tag: cime6.0.13
Answer Changes: None
Tests: scripts_regression_tests, pytest, & by hand
Dependencies:
Brief Summary:
- Handle ESMF_Profile format change (backward compatible).
- Extend throughput and memory checking in baseline tests.
- FUNIT needs CIME_NO_CMAKE_MACRO ON for now.
- New compset naming convention.
- Changes needed for new cesm grid split in ccs_config_cesm.
- Move cesm config files to new repository - ccs_config_cesm.
- Add enforcing code formatting to pre-commit.
- Support importing buildnml from cime_config/{compname}_cime_py.
- Update the documentation of --extra-machines-dir.
- Fix returning correct test results.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
163752d4 Merge pull request #4150 from jedwards4b/esmf_profile_update
b0ada2143 Merge pull request #4151 from ESMCI/azamat/extend-perf-checks
f58bb131a Merge pull request #4149 from billsacks/funit_no_cmake_macro
7e63749f2 Merge pull request #4148 from jedwards4b/jedwards/refactor_compset_naming
bc80870bf changes needed for new cesm grid split in ccs_config_cesm (#4145)
a633c4521 Merge pull request #4144 from mvertens/feature/split_cesm_config
281c3d829 Merge pull request #4141 from jasonb5/precommit
178e9f83e Merge pull request #4130 from mnlevy1981/improve_cime_config
aba326d08 Merge pull request #4137 from billsacks/doc_extra_machines_dir
d6ffc88e3 Merge pull request #4143 from jasonb5/fix_testing
Modified files: git diff --name-status [previous_tag]
A .git-blame-ignore-revs
M .github/PULL_REQUEST_TEMPLATE
M .github/workflows/srt.yml
M .github/workflows/srt_nuopc.yml
M .gitignore
M .pre-commit-config.yaml
M CONTRIBUTING.md
M ChangeLog
M ChangeLog_template
M Externals.cfg
M LICENSE.TXT
D config/cesm/config_archive.xml
M config/cesm/config_files.xml
D config/cesm/config_grids.xml
D config/cesm/config_grids_common.xml
D config/cesm/config_grids_mct.xml
D config/cesm/config_grids_nuopc.xml
D config/cesm/config_inputdata.xml
D config/cesm/machines/Depends.babbageKnc
D config/cesm/machines/Depends.bluewaters
D config/cesm/machines/Depends.corip1
D config/cesm/machines/Depends.cray
D config/cesm/machines/Depends.gnu
D config/cesm/machines/Depends.intel
D config/cesm/machines/Depends.intel14
D config/cesm/machines/Depends.intelmic
D config/cesm/machines/Depends.intelmic14
D config/cesm/machines/Depends.mira
D config/cesm/machines/Depends.nag
D config/cesm/machines/Depends.nvhpc-gpu
D config/cesm/machines/Depends.pgi-gpu
D config/cesm/machines/README
D config/cesm/machines/cmake_macros/CMakeLists.txt
D config/cesm/machines/cmake_macros/CNL.cmake
D config/cesm/machines/cmake_macros/Darwin.cmake
D config/cesm/machines/cmake_macros/Macros.cmake
D config/cesm/machines/cmake_macros/arm.cmake
D config/cesm/machines/cmake_macros/armgcc.cmake
D config/cesm/machines/cmake_macros/athena.cmake
D config/cesm/machines/cmake_macros/bluewaters.cmake
D config/cesm/machines/cmake_macros/casper.cmake
D config/cesm/machines/cmake_macros/centos7-linux.cmake
D config/cesm/machines/cmake_macros/cheyenne.cmake
D config/cesm/machines/cmake_macros/container.cmake
D config/cesm/machines/cmake_macros/cray.cmake
D config/cesm/machines/cmake_macros/cray_daint.cmake
D config/cesm/machines/cmake_macros/euler2.cmake
D config/cesm/machines/cmake_macros/euler3.cmake
D config/cesm/machines/cmake_macros/euler4.cmake
D config/cesm/machines/cmake_macros/frontera.cmake
D config/cesm/machines/cmake_macros/gnu.cmake
D config/cesm/machines/cmake_macros/gnu_cheyenne.cmake
D config/cesm/machines/cmake_macros/gnu_coeus.cmake
D config/cesm/machines/cmake_macros/gnu_hobart.cmake
D config/cesm/machines/cmake_macros/gnu_homebrew.cmake
D config/cesm/machines/cmake_macros/gnu_melvin.cmake
D config/cesm/machines/cmake_macros/gnu_modex.cmake
D config/cesm/machines/cmake_macros/hobart.cmake
D config/cesm/machines/cmake_macros/ibm.cmake
D config/cesm/machines/cmake_macros/ibm_AIX.cmake
D config/cesm/machines/cmake_macros/ibm_BGQ.cmake
D config/cesm/machines/cmake_macros/ibm_mira.cmake
D config/cesm/machines/cmake_macros/intel.cmake
D config/cesm/machines/cmake_macros/intel_Darwin.cmake
D config/cesm/machines/cmake_macros/intel_aleph.cmake
D config/cesm/machines/cmake_macros/intel_athena.cmake
D config/cesm/machines/cmake_macros/intel_bluewaters.cmake
D config/cesm/machines/cmake_macros/intel_casper.cmake
D config/cesm/machines/cmake_macros/intel_cheyenne.cmake
D config/cesm/machines/cmake_macros/intel_constance.cmake
D config/cesm/machines/cmake_macros/intel_cori-haswell.cmake
D config/cesm/machines/cmake_macros/intel_cori-knl.cmake
D config/cesm/machines/cmake_macros/intel_eastwind.cmake
D config/cesm/machines/cmake_macros/intel_edison.cmake
D config/cesm/machines/cmake_macros/intel_euler2.cmake
D config/cesm/machines/cmake_macros/intel_euler3.cmake
D config/cesm/machines/cmake_macros/intel_euler4.cmake
D config/cesm/machines/cmake_macros/intel_greenplanet-sib29.cmake
D config/cesm/machines/cmake_macros/intel_greenplanet-sky24.cmake
D config/cesm/machines/cmake_macros/intel_hobart.cmake
D config/cesm/machines/cmake_macros/intel_izumi.cmake
D config/cesm/machines/cmake_macros/intel_laramie.cmake
D config/cesm/machines/cmake_macros/intel_lawrencium-lr2.cmake
D config/cesm/machines/cmake_macros/intel_lawrencium-lr3.cmake
D config/cesm/machines/cmake_macros/intel_sandiatoss3.cmake
D config/cesm/machines/cmake_macros/intel_stampede2-knl.cmake
D config/cesm/machines/cmake_macros/intel_stampede2-skx.cmake
D config/cesm/machines/cmake_macros/intel_theia.cmake
D config/cesm/machines/cmake_macros/intel_zeus.cmake
D config/cesm/machines/cmake_macros/izumi.cmake
D config/cesm/machines/cmake_macros/laramie.cmake
D config/cesm/machines/cmake_macros/lonestar5.cmake
D config/cesm/machines/cmake_macros/nag.cmake
D config/cesm/machines/cmake_macros/nvhpc-gpu.cmake
D config/cesm/machines/cmake_macros/nvhpc-gpu_casper.cmake
D config/cesm/machines/cmake_macros/nvhpc.cmake
D config/cesm/machines/cmake_macros/nvhpc_casper.cmake
D config/cesm/machines/cmake_macros/pgi-gpu.cmake
D config/cesm/machines/cmake_macros/pgi-gpu_casper.cmake
D config/cesm/machines/cmake_macros/pgi.cmake
D config/cesm/machines/cmake_macros/pgi_bluewaters.cmake
D config/cesm/machines/cmake_macros/pgi_casper.cmake
D config/cesm/machines/cmake_macros/pgi_cheyenne.cmake
D config/cesm/machines/cmake_macros/pgi_constance.cmake
D config/cesm/machines/cmake_macros/pgi_daint.cmake
D config/cesm/machines/cmake_macros/pgi_eastwind.cmake
D config/cesm/machines/cmake_macros/pgi_euler2.cmake
D config/cesm/machines/cmake_macros/pgi_euler3.cmake
D config/cesm/machines/cmake_macros/pgi_euler4.cmake
D config/cesm/machines/cmake_macros/pgi_hobart.cmake
D config/cesm/machines/cmake_macros/pgi_izumi.cmake
D config/cesm/machines/cmake_macros/pgi_olympus.cmake
D config/cesm/machines/cmake_macros/pleiades-bro.cmake
D config/cesm/machines/cmake_macros/pleiades-has.cmake
D config/cesm/machines/cmake_macros/pleiades-ivy.cmake
D config/cesm/machines/cmake_macros/pleiades-san.cmake
D config/cesm/machines/cmake_macros/stampede2-knl.cmake
D config/cesm/machines/cmake_macros/stampede2-skx.cmake
D config/cesm/machines/cmake_macros/theta.cmake
D config/cesm/machines/cmake_macros/universal.cmake
D config/cesm/machines/cmake_macros/userdefined.cmake
D config/cesm/machines/cmake_macros/zeus.cmake
D config/cesm/machines/config_batch.xml
D config/cesm/machines/config_compilers.xml
D config/cesm/machines/config_machines.xml
D config/cesm/machines/config_pio.xml
D config/cesm/machines/config_workflow.xml
D config/cesm/machines/cylc_suite.rc.template
D config/cesm/machines/mpi_run_gpu.casper
D config/cesm/machines/nag_mpi_argument.txt
D config/cesm/machines/template.case.run
D config/cesm/machines/template.case.test
D config/cesm/machines/template.st_archive
D config/cesm/machines/userdefined_laptop_template/README.md
D config/cesm/machines/userdefined_laptop_template/config_compilers.xml
D config/cesm/machines/userdefined_laptop_template/config_machines.xml
D config/cesm/machines/userdefined_laptop_template/config_pes.xml
D config/ufs/config_archive.xml
M config/ufs/config_files.xml
D config/ufs/config_grids.xml
D config/ufs/config_inputdata.xml
D config/ufs/machines/Depends.cray
D config/ufs/machines/Depends.gnu
D config/ufs/machines/Depends.intel
D config/ufs/machines/README
D config/ufs/machines/config_batch.xml
D config/ufs/machines/config_compilers.xml
D config/ufs/machines/config_machines.xml
D config/ufs/machines/config_pio.xml
D config/ufs/machines/config_workflow.xml
D config/ufs/machines/cylc_suite.rc.template
D config/ufs/machines/template.case.run
D config/ufs/machines/template.case.test
D config/ufs/machines/template.chgres.run
D config/ufs/machines/template.gfs_post.run
D config/ufs/machines/template.st_archive
D config/ufs/machines/userdefined_laptop_template/README.md
D config/ufs/machines/userdefined_laptop_template/config_compilers.xml
D config/ufs/machines/userdefined_laptop_template/config_machines.xml
D config/ufs/machines/userdefined_laptop_template/config_pes.xml
M config/xml_schemas/config_grids_v2.2.xsd
M config/xml_schemas/config_machines.xsd
M conftest.py
M doc/Makefile
M doc/README
M doc/source/Tools_user/index.rst.template
M doc/source/_templates/layout.html
M doc/source/build_cpl/adding-components.rst
M doc/source/build_cpl/index.rst
M doc/source/build_cpl/introduction.rst
M doc/source/conf.py
M doc/source/glossary/index.rst
M doc/source/index.rst
M doc/source/misc_tools/ect.rst
M doc/source/misc_tools/load-balancing-tool.rst
M doc/source/users_guide/cime-internals.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/users_guide/unit_testing.rst
M doc/source/what_cime/index.rst
M doc/source/xml_files/atmosphere.rst
M doc/source/xml_files/cesm.rst
M doc/source/xml_files/common.rst
M doc/source/xml_files/components.rst
M doc/source/xml_files/drivers.rst
M doc/source/xml_files/e3sm.rst
M doc/source/xml_files/esp.rst
M doc/source/xml_files/index.rst
M doc/source/xml_files/land.rst
M doc/source/xml_files/landice.rst
M doc/source/xml_files/ocean.rst
M doc/source/xml_files/river.rst
M doc/source/xml_files/seaice.rst
M doc/source/xml_files/wave.rst
M doc/tools_autodoc.cfg
M doc/tools_autodoc.py
M scripts/Tools/archive_metadata
M scripts/Tools/bld_diff
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/cs.status
M scripts/Tools/e3sm_check_env
M scripts/Tools/e3sm_compile_wrap.py
M scripts/Tools/generate_cylc_workflow.py
M scripts/Tools/getTiming
M scripts/Tools/get_case_env
M scripts/Tools/get_standard_makefile_args
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_e3sm_tests
M scripts/Tools/mvsource
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/standard_script_setup.py
M scripts/Tools/testreporter.py
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlchange
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/convert-grid-v1-to-v2
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/Tools/xmlquery
M scripts/Tools/xmltestentry
M scripts/climate_reproducibility/README.md
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
M scripts/fortran_unit_testing/python/printer.py
M scripts/fortran_unit_testing/python/test_xml_test_list.py
M scripts/fortran_unit_testing/python/xml_test_list.py
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macroconditiontree.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/BuildTools/makemacroswriter.py
M scripts/lib/CIME/BuildTools/possiblevalues.py
M scripts/lib/CIME/BuildTools/valuesetting.py
M scripts/lib/CIME/Servers/__init__.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/generic_server.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/erri.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/ert.py
M scripts/lib/CIME/SystemTests/funit.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/hommebaseclass.py
M scripts/lib/CIME/SystemTests/hommebfb.py
M scripts/lib/CIME/SystemTests/icp.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/SystemTests/mcc.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pfs.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/rep.py
M scripts/lib/CIME/SystemTests/restart_tests.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/sms.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/SystemTests/test_utils/user_nl_utils.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_build.py
M scripts/lib/CIME/XML/env_case.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_run.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/expected_fails_file.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/headers.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/XML/standard_module_setup.py
M scripts/lib/CIME/XML/stream.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/XML/testspec.py
M scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/README
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/case_test.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/check_lockedfiles.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/cs_status.py
M scripts/lib/CIME/cs_status_creator.py
M scripts/lib/CIME/date.py
M scripts/lib/CIME/expected_fails.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/locked_files.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/tests/base.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/tests/custom_assertions_test_status.py
M scripts/lib/CIME/tests/scripts_regression_tests.py
M scripts/lib/CIME/tests/test_sys_bless_tests_results.py
M scripts/lib/CIME/tests/test_sys_build_system.py
M scripts/lib/CIME/tests/test_sys_cime_case.py
M scripts/lib/CIME/tests/test_sys_cime_performance.py
M scripts/lib/CIME/tests/test_sys_cmake_macros.py
M scripts/lib/CIME/tests/test_sys_create_newcase.py
M scripts/lib/CIME/tests/test_sys_full_system.py
M scripts/lib/CIME/tests/test_sys_grid_generation.py
M scripts/lib/CIME/tests/test_sys_jenkins_generic_job.py
M scripts/lib/CIME/tests/test_sys_macro_basic.py
M scripts/lib/CIME/tests/test_sys_make_macros.py
M scripts/lib/CIME/tests/test_sys_manage_and_query.py
M scripts/lib/CIME/tests/test_sys_run_restart.py
M scripts/lib/CIME/tests/test_sys_save_timings.py
M scripts/lib/CIME/tests/test_sys_single_submit.py
M scripts/lib/CIME/tests/test_sys_test_scheduler.py
M scripts/lib/CIME/tests/test_sys_unittest.py
M scripts/lib/CIME/tests/test_sys_user_concurrent_mods.py
M scripts/lib/CIME/tests/test_sys_wait_for_tests.py
M scripts/lib/CIME/tests/test_unit_case.py
M scripts/lib/CIME/tests/test_unit_case_fake.py
M scripts/lib/CIME/tests/test_unit_case_setup.py
M scripts/lib/CIME/tests/test_unit_compare_test_results.py
M scripts/lib/CIME/tests/test_unit_compare_two.py
M scripts/lib/CIME/tests/test_unit_cs_status.py
M scripts/lib/CIME/tests/test_unit_custom_assertions_test_status.py
M scripts/lib/CIME/tests/test_unit_expected_fails_file.py
M scripts/lib/CIME/tests/test_unit_grids.py
M scripts/lib/CIME/tests/test_unit_nmlgen.py
M scripts/lib/CIME/tests/test_unit_provenance.py
M scripts/lib/CIME/tests/test_unit_test_status.py
M scripts/lib/CIME/tests/test_unit_two_link_to_case2_output.py
M scripts/lib/CIME/tests/test_unit_user_mod_support.py
M scripts/lib/CIME/tests/test_unit_user_nl_utils.py
M scripts/lib/CIME/tests/test_unit_utils.py
M scripts/lib/CIME/tests/test_unit_xml_namelist_definition.py
M scripts/lib/CIME/tests/test_xml_env_batch.py
M scripts/lib/CIME/tests/utils.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/six.py
M scripts/lib/six_additions.py
M scripts/query_config
M scripts/query_testlists
M scripts/tests/CMakeLists.txt
M scripts/tests/list_tests
M scripts/tests/user_mods_test3/shell_commands
M setup.cfg
M src/CMake/CESM_utils.cmake
M src/CMake/mpiexec.cmake
M src/build_scripts/buildlib.cprnc
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/build_scripts/buildlib_cmake.internal_components
M src/components/stub_comps_nuopc/satm/cime_config/buildnml
M src/components/stub_comps_nuopc/sesp/cime_config/buildnml
M src/components/stub_comps_nuopc/sglc/cime_config/buildnml
M src/components/stub_comps_nuopc/sice/cime_config/buildnml
M src/components/stub_comps_nuopc/slnd/cime_config/buildnml
M src/components/stub_comps_nuopc/socn/cime_config/buildnml
M src/components/stub_comps_nuopc/srof/cime_config/buildnml
M src/components/stub_comps_nuopc/swav/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xatm/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xglc/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xice/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xlnd/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xocn/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xrof/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xshare/dead_methods_mod.F90
M src/components/xcpl_comps_nuopc/xwav/cime_config/buildnml
M src/externals/genf90/ChangeLog
M src/share/README
M src/share/timing/ChangeLog
M src/share/timing/GPTLutil.c
M src/share/timing/gptl.c
M src/share/timing/gptl_papi.c
M tools/configure
M tools/load_balancing_tool/layouts.py
M tools/load_balancing_tool/load_balancing_solve.py
M tools/load_balancing_tool/load_balancing_submit.py
M tools/load_balancing_tool/optimize_model.py
M tools/load_balancing_tool/tests/atm_lnd.py
M tools/load_balancing_tool/tests/example.json
M tools/load_balancing_tool/tests/load_balancing_test.py
M tools/load_balancing_tool/tests/timing/timing_1
M tools/load_balancing_tool/tests/timing/timing_2
M tools/load_balancing_tool/tests/timing/timing_3
M tools/mapping/check_maps/check_map.sh
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/INSTALL
M tools/mapping/gen_domain_files/README
M tools/mapping/gen_domain_files/src/gen_domain.F90
M tools/mapping/gen_mapping_files/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M tools/mapping/gen_mapping_files/runoff_to_ocn/README
M tools/mapping/map_field/INSTALL
M tools/mapping/map_field/README
M tools/statistical_ensemble_test/ensemble.py
M tools/statistical_ensemble_test/pyCECT/.gitignore
M tools/statistical_ensemble_test/pyCECT/CHANGES.rst
M tools/statistical_ensemble_test/pyCECT/EET.py
M tools/statistical_ensemble_test/pyCECT/README.rst
M tools/statistical_ensemble_test/pyCECT/docs/conf.py
M tools/statistical_ensemble_test/pyCECT/docs/source/installation.rst
M tools/statistical_ensemble_test/pyCECT/docs/source/pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSumPop.rst
M tools/statistical_ensemble_test/pyCECT/docs/source/readme.rst
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
M tools/statistical_ensemble_test/pyCECT/pyPlots.py
M tools/statistical_ensemble_test/pyCECT/test_pyEnsSum.sh
M tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-16-21
Tag: cime6.0.12
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Rename izumi.unified to izumi.cgd
- Fix test ptr to run_cmd_no_fail.
- chdir is redundent in CMakeLists.txt
- Fix paths in cdash testing
- Hot fix cdash testing/
- Update unit tests and linting.
- Fix SSL certification for testing database.
- Fix probing machine.
- cprnc compares NaN.
- Update izumi ESMF lib to 8.2.0 release.
- Update CCE for crayenv2 on cheyenne.
- Cleanup Scorpio I/O performance data in the run directory.
- Fix the N_TestUnitTest by setting CIME_NO_CMAKE_MACRO
- Add python 3.7.0 module load for izumi (CESM only).
- Fix broken links in documentation.
- Update cime externals.
- tools/configure was using deprecated config_compilers.xml system.
- Remove documentation sections for pieces no longer included in CIME.
- More grids for mizuRoute.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5e99566ae Merge pull request #4142 from ESMCI/fischer/izumi_cgd
6ffadc5fd fix test ptr to run_cmd_no_fail
d271ebbd8 chdir here is redundent, done in CMakeLists.txt
1faf45586 fix paths in cdash testing
3955917de hot fix cdash testing
baf320df2 Merge pull request #4129 from jasonb5/updates_testing
e725ab7cb Merge pull request #4128 from ESMCI/fischer/testreporter_ssl
f0dca0d96 Merge pull request #4134 from billsacks/fix_machine_probe
4961f0357 Merge pull request #4132 from jedwards4b/cprnc_nan_detect
188e9fe2b Merge pull request #4124 from ESMCI/fischer/izumi_esmf
b0f7080a9 update CCE for crayenv2 on cheyenne
8c515e31c Merge pull request #4127 from ESMCI/jayeshkrishna/consolidate_spio_timing
5a98a511b fix the N_TestUnitTest by setting CIME_NO_CMAKE_MACRO
cde1dafda Merge pull request #4117 from peverwhee/python_load_module
f9fe41210 Merge pull request #4123 from billsacks/fix_doc_links
1686f03b8 update externals
9f263ed3d Merge pull request #4122 from ESMCI/jgfouca/fix_tools_configure
7f709b709 Merge pull request #4108 from billsacks/remove_some_docs
c7813bce7 Merge pull request #3823 from ekluzek/mizuRoute
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M .github/workflows/srt_nuopc.yml
A .pre-commit-config.yaml
M Externals.cfg
M README.md
M config/cesm/config_grids.xml
M config/cesm/config_grids_nuopc.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
A conftest.py
D doc/source/data_models/data-atm.rst
D doc/source/data_models/data-lnd.rst
D doc/source/data_models/data-model-science.rst
D doc/source/data_models/data-ocean.rst
D doc/source/data_models/data-river.rst
D doc/source/data_models/data-seaice.rst
D doc/source/data_models/data-wave.rst
D doc/source/data_models/design-details.rst
D doc/source/data_models/index.rst
D doc/source/data_models/input-namelists.rst
D doc/source/data_models/input-streams.rst
D doc/source/data_models/introduction.rst
D doc/source/driver_cpl/bit-for-bit-flag.rst
D doc/source/driver_cpl/budgets.rst
D doc/source/driver_cpl/cplug-02.1-figx1.jpg
D doc/source/driver_cpl/design.rst
D doc/source/driver_cpl/driver_threading_control.rst
D doc/source/driver_cpl/grids.rst
D doc/source/driver_cpl/history-and-restarts.rst
D doc/source/driver_cpl/implementation.rst
D doc/source/driver_cpl/index.rst
D doc/source/driver_cpl/initialization-and-restart.rst
D doc/source/driver_cpl/introduction.rst
D doc/source/driver_cpl/multi-instance.rst
D doc/source/driver_cpl/namelist-overview.rst
D doc/source/driver_cpl/time-management.rst
M doc/source/index.rst
M doc/source/users_guide/cime-change-namelist.rst
M doc/source/users_guide/grids.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/what_cime/index.rst
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/provenance.py
D scripts/lib/CIME/tests/SystemTests/__init__.py
D scripts/lib/CIME/tests/SystemTests/test_utils/__init__.py
D scripts/lib/CIME/tests/XML/__init__.py
A scripts/lib/CIME/tests/base.py
A scripts/lib/CIME/tests/scripts_regression_tests.py
A scripts/lib/CIME/tests/test_sys_bless_tests_results.py
A scripts/lib/CIME/tests/test_sys_build_system.py
A scripts/lib/CIME/tests/test_sys_cime_case.py
A scripts/lib/CIME/tests/test_sys_cime_performance.py
A scripts/lib/CIME/tests/test_sys_cmake_macros.py
A scripts/lib/CIME/tests/test_sys_create_newcase.py
A scripts/lib/CIME/tests/test_sys_full_system.py
A scripts/lib/CIME/tests/test_sys_grid_generation.py
A scripts/lib/CIME/tests/test_sys_jenkins_generic_job.py
A scripts/lib/CIME/tests/test_sys_macro_basic.py
A scripts/lib/CIME/tests/test_sys_make_macros.py
A scripts/lib/CIME/tests/test_sys_manage_and_query.py
A scripts/lib/CIME/tests/test_sys_query_config.py
A scripts/lib/CIME/tests/test_sys_run_restart.py
A scripts/lib/CIME/tests/test_sys_save_timings.py
A scripts/lib/CIME/tests/test_sys_single_submit.py
A scripts/lib/CIME/tests/test_sys_test_scheduler.py
A scripts/lib/CIME/tests/test_sys_unittest.py
A scripts/lib/CIME/tests/test_sys_user_concurrent_mods.py
A scripts/lib/CIME/tests/test_sys_wait_for_tests.py
D scripts/lib/CIME/tests/test_test_scheduler.py
R100 scripts/lib/CIME/tests/test_case.py scripts/lib/CIME/tests/test_unit_case.py
R100 scripts/lib/CIME/tests/test_case_fake.py scripts/lib/CIME/tests/test_unit_case_fake.py
R100 scripts/lib/CIME/tests/test_case_setup.py scripts/lib/CIME/tests/test_unit_case_setup.py
R100 scripts/lib/CIME/tests/test_compare_test_results.py scripts/lib/CIME/tests/test_unit_compare_test_results.py
R100 scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py scripts/lib/CIME/tests/test_unit_compare_two.py
R100 scripts/lib/CIME/tests/test_cs_status.py scripts/lib/CIME/tests/test_unit_cs_status.py
R100 scripts/lib/CIME/tests/test_custom_assertions_test_status.py scripts/lib/CIME/tests/test_unit_custom_assertions_test_status.py
R100 scripts/lib/CIME/tests/XML/test_expected_fails_file.py scripts/lib/CIME/tests/test_unit_expected_fails_file.py
R100 scripts/lib/CIME/tests/XML/test_grids.py scripts/lib/CIME/tests/test_unit_grids.py
R100 scripts/lib/CIME/tests/test_nmlgen.py scripts/lib/CIME/tests/test_unit_nmlgen.py
R100 scripts/lib/CIME/tests/test_provenance.py scripts/lib/CIME/tests/test_unit_provenance.py
R100 scripts/lib/CIME/tests/test_test_status.py scripts/lib/CIME/tests/test_unit_test_status.py
R100 scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py scripts/lib/CIME/tests/test_unit_two_link_to_case2_output.py
R100 scripts/lib/CIME/tests/test_user_mod_support.py scripts/lib/CIME/tests/test_unit_user_mod_support.py
R100 scripts/lib/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py scripts/lib/CIME/tests/test_unit_user_nl_utils.py
R100 scripts/lib/CIME/tests/test_utils.py scripts/lib/CIME/tests/test_unit_utils.py
R100 scripts/lib/CIME/tests/test_xml_namelist_definition.py scripts/lib/CIME/tests/test_unit_xml_namelist_definition.py
M scripts/lib/CIME/tests/utils.py
M scripts/lib/CIME/utils.py
M scripts/tests/CMakeLists.txt
M scripts/tests/list_tests
D scripts/tests/scripts_regression_tests.py
A setup.cfg
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/control_floatDoubleNan.nc
A tools/cprnc/test_inputs/diffs_in_nans.nc
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-1-21
Tag: cime6.0.11
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Add IRT test to exceptions for generate history.
- Replace use of MODEL with COMP_NAME in cmake_macros directory.
- Improve Macro.make generation.
- Update centos7-linux settings.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b763b20a9 Merge pull request #4110 from jedwards4b/fix_IRT_generate
48f8ad154 Merge pull request #4119 from jedwards4b/cmake_MODEL_TO_COMP_NAME
90b4e37b7 Merge pull request #4113 from ESMCI/jgfouca/improve_make_macro_generation
5868385ad update centos7-linux settings
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/cmake_macros/CNL.cmake
M config/cesm/machines/cmake_macros/cheyenne.cmake
M config/cesm/machines/cmake_macros/container.cmake
M config/cesm/machines/cmake_macros/cray.cmake
M config/cesm/machines/cmake_macros/frontera.cmake
M config/cesm/machines/cmake_macros/gnu_cheyenne.cmake
M config/cesm/machines/cmake_macros/gnu_modex.cmake
M config/cesm/machines/cmake_macros/hobart.cmake
M config/cesm/machines/cmake_macros/ibm.cmake
M config/cesm/machines/cmake_macros/ibm_AIX.cmake
M config/cesm/machines/cmake_macros/intel_aleph.cmake
M config/cesm/machines/cmake_macros/intel_athena.cmake
M config/cesm/machines/cmake_macros/intel_cori-haswell.cmake
M config/cesm/machines/cmake_macros/intel_cori-knl.cmake
M config/cesm/machines/cmake_macros/intel_edison.cmake
M config/cesm/machines/cmake_macros/intel_lawrencium-lr2.cmake
M config/cesm/machines/cmake_macros/intel_lawrencium-lr3.cmake
M config/cesm/machines/cmake_macros/intel_zeus.cmake
M config/cesm/machines/cmake_macros/izumi.cmake
M config/cesm/machines/cmake_macros/laramie.cmake
M config/cesm/machines/cmake_macros/nag.cmake
M config/cesm/machines/cmake_macros/nvhpc-gpu.cmake
M config/cesm/machines/cmake_macros/nvhpc.cmake
M config/cesm/machines/cmake_macros/pgi-gpu.cmake
M config/cesm/machines/cmake_macros/pgi.cmake
M config/cesm/machines/cmake_macros/universal.cmake
M config/cesm/machines/cmake_macros/zeus.cmake
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/hist_utils.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-25-2021
Tag: cime6.0.10
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Update to Cheyenne to use ESMF_8_2_0_beta_snapshot_23.
- Remove reference to Argonne from License file.
- Remove debug print statements.
- Port to nersc perlmutter and CPE on cheyenne.
- config_archive changes for running CISM with multiple ice sheets.
- wpc erio improvement.
- Hot fix Makefile for cesm.
- Fixes copying user cmake files.
- Remove MODEL as a setting for the build system, use COM_NAME instead.
- Hot fix for scripts regression tests.
- Merge branch 'master' of github.com:/ESMCI/cime.
- Update Externals
- Hot fix for nuopc mpi-serial tests.
- Remove dependency of cprnc on non-existent COMPARE_VARS target.
- Add cmake macros.
- cime_bisect: Improve robustness when using custom script.
- Update PGN and TSC test scripts for E3SM.
- Fix limited github workflow nuopc scripts regression testing.
- Hot fix, add another cam target that uses kokkos.
- Hot fix for better cmake-macro toggling.
- Change E3SM to use cmake macro file system.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1a77ba628 Merge pull request #4114 from ESMCI/fischer/ESMF_update
3708b0e26 Merge pull request #4112 from ESMCI/fischer/license
e6fb20994 hot fix, remove debug print statements
adc6adc3f Merge pull request #4106 from jedwards4b/perlmutter_port
c8af27966 Merge pull request #4101 from billsacks/remove_cism_config_archive
7eeb2c8e6 Merge pull request #4109 from ESMCI/wpc_erio_improvement
a26c8e393 hot fix Makefile for cesm
fb5934c63 Merge pull request #4105 from jasonb5/fixes_user_cmake
4a6b60438 Merge pull request #4104 from ESMCI/jgfouca/remove_MODEL_from_bld
828fd3227 hot fix for scripts regression tests
79159c14e Merge branch 'master' of github.com:/ESMCI/cime
ea1597e79 update externals
d6956db5c hot fix for nuopc mpi-serial test
3d1be0ed6 Merge pull request #4098 from bartgol/bartgol/remove-compare-vars-dep
2b6088308 Merge pull request #4093 from jedwards4b/replace_config_compilers_with_cmake_macros
258737591 Merge pull request #4099 from ESMCI/jgfouca/imprv_cime_bisect
802206017 Merge pull request #4092 from ESMCI/wlin/atm_pgn_tsc_tests
c89e85d10 Merge pull request #4094 from ESMCI/fischer/nuopc_srt
6a2cc11fd hotfix, add another cam target that uses kokkos
fbb407916 Hotfix for better cmake-macro toggling
86a0db6f3 Merge pull request #4088 from ESMCI/jgfouca/e3sm_cmake_macros
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt_nuopc.yml
M CMakeLists.txt
M Externals.cfg
M LICENSE.TXT
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
A config/cesm/machines/cmake_macros/CMakeLists.txt
A config/cesm/machines/cmake_macros/CNL.cmake
A config/cesm/machines/cmake_macros/Darwin.cmake
A config/cesm/machines/cmake_macros/Macros.cmake
A config/cesm/machines/cmake_macros/arm.cmake
A config/cesm/machines/cmake_macros/armgcc.cmake
A config/cesm/machines/cmake_macros/athena.cmake
A config/cesm/machines/cmake_macros/bluewaters.cmake
A config/cesm/machines/cmake_macros/casper.cmake
A config/cesm/machines/cmake_macros/centos7-linux.cmake
A config/cesm/machines/cmake_macros/cheyenne.cmake
A config/cesm/machines/cmake_macros/container.cmake
A config/cesm/machines/cmake_macros/cray.cmake
A config/cesm/machines/cmake_macros/cray_daint.cmake
A config/cesm/machines/cmake_macros/euler2.cmake
A config/cesm/machines/cmake_macros/euler3.cmake
A config/cesm/machines/cmake_macros/euler4.cmake
A config/cesm/machines/cmake_macros/frontera.cmake
A config/cesm/machines/cmake_macros/gnu.cmake
A config/cesm/machines/cmake_macros/gnu_cheyenne.cmake
A config/cesm/machines/cmake_macros/gnu_coeus.cmake
A config/cesm/machines/cmake_macros/gnu_hobart.cmake
A config/cesm/machines/cmake_macros/gnu_homebrew.cmake
A config/cesm/machines/cmake_macros/gnu_melvin.cmake
A config/cesm/machines/cmake_macros/gnu_modex.cmake
A config/cesm/machines/cmake_macros/hobart.cmake
A config/cesm/machines/cmake_macros/ibm.cmake
A config/cesm/machines/cmake_macros/ibm_AIX.cmake
A config/cesm/machines/cmake_macros/ibm_BGQ.cmake
A config/cesm/machines/cmake_macros/ibm_mira.cmake
A config/cesm/machines/cmake_macros/intel.cmake
A config/cesm/machines/cmake_macros/intel_Darwin.cmake
A config/cesm/machines/cmake_macros/intel_aleph.cmake
A config/cesm/machines/cmake_macros/intel_athena.cmake
A config/cesm/machines/cmake_macros/intel_bluewaters.cmake
A config/cesm/machines/cmake_macros/intel_casper.cmake
A config/cesm/machines/cmake_macros/intel_cheyenne.cmake
A config/cesm/machines/cmake_macros/intel_constance.cmake
A config/cesm/machines/cmake_macros/intel_cori-haswell.cmake
A config/cesm/machines/cmake_macros/intel_cori-knl.cmake
A config/cesm/machines/cmake_macros/intel_eastwind.cmake
A config/cesm/machines/cmake_macros/intel_edison.cmake
A config/cesm/machines/cmake_macros/intel_euler2.cmake
A config/cesm/machines/cmake_macros/intel_euler3.cmake
A config/cesm/machines/cmake_macros/intel_euler4.cmake
A config/cesm/machines/cmake_macros/intel_greenplanet-sib29.cmake
A config/cesm/machines/cmake_macros/intel_greenplanet-sky24.cmake
A config/cesm/machines/cmake_macros/intel_hobart.cmake
A config/cesm/machines/cmake_macros/intel_izumi.cmake
A config/cesm/machines/cmake_macros/intel_laramie.cmake
A config/cesm/machines/cmake_macros/intel_lawrencium-lr2.cmake
A config/cesm/machines/cmake_macros/intel_lawrencium-lr3.cmake
A config/cesm/machines/cmake_macros/intel_sandiatoss3.cmake
A config/cesm/machines/cmake_macros/intel_stampede2-knl.cmake
A config/cesm/machines/cmake_macros/intel_stampede2-skx.cmake
A config/cesm/machines/cmake_macros/intel_theia.cmake
A config/cesm/machines/cmake_macros/intel_zeus.cmake
A config/cesm/machines/cmake_macros/izumi.cmake
A config/cesm/machines/cmake_macros/laramie.cmake
A config/cesm/machines/cmake_macros/lonestar5.cmake
A config/cesm/machines/cmake_macros/nag.cmake
A config/cesm/machines/cmake_macros/nvhpc-gpu.cmake
A config/cesm/machines/cmake_macros/nvhpc-gpu_casper.cmake
A config/cesm/machines/cmake_macros/nvhpc.cmake
A config/cesm/machines/cmake_macros/nvhpc_casper.cmake
A config/cesm/machines/cmake_macros/pgi-gpu.cmake
A config/cesm/machines/cmake_macros/pgi-gpu_casper.cmake
A config/cesm/machines/cmake_macros/pgi.cmake
A config/cesm/machines/cmake_macros/pgi_bluewaters.cmake
A config/cesm/machines/cmake_macros/pgi_casper.cmake
A config/cesm/machines/cmake_macros/pgi_cheyenne.cmake
A config/cesm/machines/cmake_macros/pgi_constance.cmake
A config/cesm/machines/cmake_macros/pgi_daint.cmake
A config/cesm/machines/cmake_macros/pgi_eastwind.cmake
A config/cesm/machines/cmake_macros/pgi_euler2.cmake
A config/cesm/machines/cmake_macros/pgi_euler3.cmake
A config/cesm/machines/cmake_macros/pgi_euler4.cmake
A config/cesm/machines/cmake_macros/pgi_hobart.cmake
A config/cesm/machines/cmake_macros/pgi_izumi.cmake
A config/cesm/machines/cmake_macros/pgi_olympus.cmake
A config/cesm/machines/cmake_macros/pleiades-bro.cmake
A config/cesm/machines/cmake_macros/pleiades-has.cmake
A config/cesm/machines/cmake_macros/pleiades-ivy.cmake
A config/cesm/machines/cmake_macros/pleiades-san.cmake
A config/cesm/machines/cmake_macros/stampede2-knl.cmake
A config/cesm/machines/cmake_macros/stampede2-skx.cmake
A config/cesm/machines/cmake_macros/theta.cmake
A config/cesm/machines/cmake_macros/universal.cmake
A config/cesm/machines/cmake_macros/userdefined.cmake
A config/cesm/machines/cmake_macros/zeus.cmake
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/config_files.xml
M config/xml_schemas/config_archive.xsd
M doc/source/users_guide/cime-config.rst
M doc/source/users_guide/machine.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/troubleshooting.rst
M doc/source/users_guide/unit_testing.rst
M doc/source/xml_files/cesm.rst
M scripts/Tools/Makefile
M scripts/Tools/cime_bisect
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/test_scheduler.py
A scripts/lib/CIME/tests/test_case_setup.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-09-2021
Tag: cime6.0.9
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix scripts_regression_tests on mappy for e3sm.
- Update the test_schedualer to reflect default driver change.
- Adds a container machine definition.
- Bump pillow from 8.2.0 to 8.3.2 in /tools/statistical_ensemble_test/pyCECT/docs.
- Update modules and build flags on cori.
- Add a SourceMods/src.cdeps directory for shared cdeps sourcemods.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
4fa1194a2 Merge pull request #4085 from ESMCI/jgfouca/fix_scripts_reg
0eaecd9f0 Merge pull request #4082 from jedwards4b/update_for_nuopc_default
4981c6277 Merge pull request #4081 from jedwards4b/better_neon_data_handling
27df61824 Merge pull request #4084 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-8.3.2
cd6c7eaf0 Merge pull request #4047 from jedwards4b/cori_update
4906230e4 Merge pull request #4079 from jedwards4b/add_cdeps_SourceMods
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/test_case.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.mct
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-02-2021
Tag: cime6.0.8
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Add ESMF modules for PGI on izumi.
- Allow test_reporter to post long list of test results to database.
- Set nuopc as the default.
- Remove moab.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1c41537f7 Merge pull request #4080 from ESMCI/fischer/izumi_esmf
5ba4a6b12 Merge pull request #4075 from ESMCI/fischer/test_reporter_update
13d2a36eb Merge pull request #4078 from jedwards4b/change_cesm_default_driver_nuopc
4e9e4f409 Merge pull request #4037 from ESMCI/fischer/moab
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M .github/workflows/srt_nuopc.yml
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/utils.py
D src/drivers/moab
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-25-2021
Tag: cime6.0.7
Answer Changes: None
Tests: ran the test testlist_cdeps.xml
Dependencies:
Brief Summary:
- Changes to have new user_nl_stream_xxx for cdeps.
User interface changes:
- New user_nl_xxx_streams file to change CDEPS stream files
PR summary: git log --oneline --first-parent [previous_tag]..master
173f5c35b Merge pull request #4074 from mvertens/feature/new_userstream_file
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case/case_setup.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-20-2021
Tag: cime6.0.6
Answer Changes: [None, Round Off, Climate Changing]
Tests:
Dependencies:
Brief Summary:
- Make sure CLM_USERDAT_NAME is not UNSET if set.
- New mesh file and grid for running CISM over Antarctica.
- Handle neon data better by first checking the neon server.
- Fixes provenance in git worktree.
- Fix namelist duplications.
- Changed Addendum to Appendices.
- Allow multiple methods for running unit tests.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2ceb39021 make sure CLM_USRDAT_NAME is not UNSET if set
99d111786 Merge pull request #4071 from billsacks/update_antarctica_grid
e54b73654 Merge pull request #4073 from jedwards4b/better_neon_data_handling
db69f21d4 Merge pull request #4060 from jasonb5/fix_git_worktree
e66984b24 Merge pull request #4066 from jasonb5/fix_namelist_duplications
48fc713a9 Merge pull request #4070 from Sukhamjot-Singh/patch-1
322d52bc6 Merge pull request #4008 from billsacks/unit_tests_multiple_methods
Modified files: git diff --name-status [previous_tag]
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-6-2021
Tag: cime6.0.5
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix an issue with file locks when not run from caseroot.
- Strip % from job_id.
- Update esmf version.
- Support the creation of multiple user_nl files for a component.
User interface changes:
- Allows components to define a get_user_nl_list function in their
buildnml file, which supports the creation of multiple user_nl files for
the component
PR summary: git log --oneline --first-parent [previous_tag]..master
949b0e798 (HEAD -> master, origin/master, origin/HEAD) Merge pull request #4065 from jedwards4b/fix_not_in_caseroot
a2b4a90d7 Merge pull request #4064 from jedwards4b/strip_job_id
9d731e9b3 update esmf version
e90399193 Merge pull request #4058 from billsacks/multiple_user_nls
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt_nuopc.yml
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-2-2021
Tag: cime6.0.4
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix replay archive.
- Prepend the casename to mpas component restart file search in st_archive.
- Fix e3sm archiving.
- Check the size of read only xml files.
- Ensure Cmake is available for wait_for_tests.
- Fix the failure of ensemble consistency tests for PGI/NVHPC compiler on Casper.
- Fix type in centos7-linux definition.
- jenkins_generic_job: no reason for this magic config setting here.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c6f489356 Merge pull request #4053 from jasonb5/fix_replay_archive
dbaa9b2d2 Merge pull request #4057 from ESMCI/jonbob/fix_mpas_archive_naming
1ee229961 Merge pull request #4055 from jasonb5/fix_e3sm_archiving
705640271 Merge pull request #4056 from jedwards4b/jedwards/checksize_of_xml
231c8e783 Merge pull request #4052 from ESMCI/jgfouca/fix_cmake_avail_for_wft
4961a210a Merge pull request #4048 from sjsprecious/fix_ect_failure
d72fc45f1 fix typo in centos7-linux definition
49342dca5 Merge pull request #4046 from ESMCI/jgfouca/remove_dumb_config
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.nvhpc-gpu
M config/cesm/machines/Depends.pgi-gpu
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/jenkins_generic_job
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/tests/test_case.py
M scripts/lib/CIME/tests/test_provenance.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Bill Sacks
Date: 7-15-2021
Tag: cime6.0.3
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- WW3 support for E3SM
- Allow a test to have multiple testmods
- Update python version check to 3.6 and load python module on cheyenne
- Update ESMF libraries on cheyenne and izumi
User interface changes:
- Allow multiple user mods directories in tests as well as in
create_newcase and create_clone. This is completely backwards
compatible.
PR summary: git log --oneline --first-parent [previous_tag]..master
45a8622dc Merge pull request #4042 from jedwards4b/jedwards/testmods_path
4ac7bfb6b Merge pull request #4040 from ESMCI/fischer/esmf
0067c2dc3 Merge pull request #4038 from ESMCI/mkstratos/fix_clim_repro_bugs
5e2046fee update standalone externals
2709797d1 Merge pull request #4035 from billsacks/cheyenne_python_module
26e38f5e2 Merge pull request #4030 from ESMCI/fix_auto_r8
5f055413e Merge pull request #4031 from billsacks/multiple_testmods
790be3994 Merge pull request #4029 from jasonb5/fix_external_mct
4312d8506 Merge pull request #4028 from jasonb5/add_missing_desp_definition
2f363cffd Merge pull request #4027 from ESMCI/jonbob/e3sm/support-add-ww3
cdc40cba4 Merge pull request #4026 from jedwards4b/jedwards/centos7-update
6788449eb fix pylint issue
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M ChangeLog
M Externals.cfg
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M scripts/Tools/Makefile
M scripts/Tools/standard_script_setup.py
M scripts/create_clone
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/get_tests.py
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-29-2021
Tag: cime6.0.2
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Update externals.
- Fix tests.
- Add esmf support for casper pgi.
- Fix testreporter issues with python3
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
95644f2 update externals
52f6cca Merge pull request #4022 from jedwards4b/jedwards/fix_tests
cb316dd Merge pull request #4023 from ESMCI/fischer/casper
4246060 Merge pull request #4021 from ESMCI/fischer/testreporter_python3
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M Externals.cfg
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/XML/test_reporter.py
M src/build_scripts/buildlib.cprnc
D src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.pio
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-29-2021
Tag: cime6.0.1
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Allow multiple copys of this variable.
- Updates from imp to importlib.
- Set default python to 'python3' for scripts tests CMake file.
- Add a new version of WW3 as an optional component.
- Multi gpus casper.
- cime smartsim.
- Refactor lilac build - only relevant to CESM.
- Adds default walltime for queues.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ccdf7376e Merge pull request #4019 from jedwards4b/fix_max_tasks_per_node
792be93f1 Merge pull request #4015 from jasonb5/update_importlib
f919e5809 Merge pull request #4016 from ESMCI/jgfouca/fix_mappy_py_ctest
7989160f2 Merge pull request #3976 from ESMCI/feature/add_ww3
1ca7db61f merge multi_gpus_casper
915ab904c Merge branch 'cime_smartsim'
b42da1b94 Merge pull request #4014 from ESMCI/feature/refactor_lilac_build
523e9afc5 Merge pull request #4011 from jasonb5/add_default_walltime
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/Depends.nvhpc-gpu
M config/cesm/machines/Depends.pgi-gpu
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
A config/cesm/machines/mpi_run_gpu.casper
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_machines.xsd
M scripts/Tools/Makefile
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/test_case.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/tests/test_xml_env_batch.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/tests/CMakeLists.txt
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-23-2021
Tag: cime6.0.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Remove files that were moved out in #3990
- Remove all python2 invocations, except some stuff form tools.
- Seperation of fortran code to new repositories.
- Change cdash upload settings.
- Fix walltime check.
- Record preview_run provenance.
- Fixes error in parsing and comparing namelist values.
- Bump pillow from 8.1.1 to 8.2.0 in /tools/statistical_ensemble_test/pyCECT/docs
- Update the esmf library module all compilers, update gnu compiler to 10.1.0 on cheyenne.
- Fix unittest raising error on py37.
- Allow multiple grids for a component.
- Update climate reproducibility tests.
- Adds --chksum argument to case.submit and create_test.
- Fixes new_hash method.
- Adds CASE_HASH to env_case.
- Modify ERI test for EAM.
- Switch location of E3SM share buildlib scripts.
- Updates for pleiades systems.
- Add feature to capture CIME commands in a script.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
866d4f507 Merge pull request #4010 from ESMCI/fischer/rm_moved_share
19c689b3a Merge pull request #4009 from ESMCI/jgfouca/more_python_churn
ca5bcf0a8 Seperation of fortran code to new repositories. (#3990)
6b7a8e201 Merge pull request #4006 from ESMCI/jgfouca/change_cdash_drop_settings
8d916c1a8 Merge pull request #4005 from jasonb5/fix_walltime_check
71ddf1ced Merge pull request #3998 from jasonb5/fix_record_run_details
4d5fdbab2 Merge pull request #3994 from jasonb5/fix_namelist_cmp
bc9733021 Merge pull request #3991 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-8.2.0
b5301eb2f Merge pull request #3985 from jedwards4b/fix_make_bld_flags
8a3320cb6 Merge pull request #3986 from jasonb5/fix_unittest_py37
2ae0ec9e3 Merge pull request #3982 from billsacks/glc_multigrids
e4f7ac800 Merge pull request #3967 from ESMCI/mkstratos/update_repro_tests
8ec59c02d Merge pull request #3977 from jasonb5/add_chksum_argument
7653760bc Merge pull request #3975 from jasonb5/fix_new_hash
d224588ef Merge pull request #3968 from jasonb5/add_case_hash
ad68a5d35 Merge pull request #3963 from ESMCI/rljacob/fix-eri4eam
9e5b743ef Merge pull request #3959 from ESMCI/rljacob/e3sm-mvshare2
353730e0f Merge pull request #3946 from fvitt/pleiades_updates
3591f0afe Merge pull request #3958 from jasonb5/add_script_capture
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
A .github/workflows/srt_nuopc.yml
M .gitignore
M CMakeLists.txt
A Externals.cfg
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/e3sm/config_files.xml
M config/ufs/machines/template.case.run
M config/ufs/machines/template.case.test
M config/ufs/machines/template.st_archive
M doc/source/users_guide/running-a-case.rst
M doc/tools_autodoc.py
M scripts/Tools/Makefile
M scripts/Tools/bld_diff
M scripts/Tools/case.build
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/convert-grid-v1-to-v2
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/python/test_xml_test_list.py
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
M scripts/lib/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
M scripts/lib/CIME/tests/XML/test_expected_fails_file.py
A scripts/lib/CIME/tests/XML/test_grids.py
A scripts/lib/CIME/tests/test_case.py
M scripts/lib/CIME/tests/test_case_fake.py
M scripts/lib/CIME/tests/test_compare_test_results.py
M scripts/lib/CIME/tests/test_cs_status.py
M scripts/lib/CIME/tests/test_custom_assertions_test_status.py
M scripts/lib/CIME/tests/test_provenance.py
A scripts/lib/CIME/tests/test_test_scheduler.py
M scripts/lib/CIME/tests/test_test_status.py
M scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/tests/test_utils.py
A scripts/lib/CIME/tests/test_xml_env_batch.py
A scripts/lib/CIME/tests/utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M src/CMake/CIME_utils.cmake
M src/build_scripts/buildlib.cprnc
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/build_scripts/buildlib_cmake.internal_components
D src/components/data_comps_mct/datm/cime_config/buildlib
D src/components/data_comps_mct/datm/cime_config/buildlib_cmake
D src/components/data_comps_mct/datm/cime_config/buildnml
D src/components/data_comps_mct/datm/cime_config/config_archive.xml
D src/components/data_comps_mct/datm/cime_config/config_component.xml
D src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
D src/components/data_comps_mct/datm/cime_config/user_nl_datm
D src/components/data_comps_mct/datm/src/atm_comp_mct.F90
D src/components/data_comps_mct/datm/src/datm_comp_mod.F90
D src/components/data_comps_mct/datm/src/datm_shr_mod.F90
D src/components/data_comps_mct/desp/cime_config/buildlib
D src/components/data_comps_mct/desp/cime_config/buildlib_cmake
D src/components/data_comps_mct/desp/cime_config/buildnml
D src/components/data_comps_mct/desp/cime_config/config_component.xml
D src/components/data_comps_mct/desp/cime_config/namelist_definition_desp.xml
D src/components/data_comps_mct/desp/cime_config/user_nl_desp
D src/components/data_comps_mct/desp/desp_comp_mod.F90
D src/components/data_comps_mct/desp/esp_utils.F90
D src/components/data_comps_mct/desp/src/esp_comp_mct.F90
D src/components/data_comps_mct/dice/cime_config/buildlib
D src/components/data_comps_mct/dice/cime_config/buildlib_cmake
D src/components/data_comps_mct/dice/cime_config/buildnml
D src/components/data_comps_mct/dice/cime_config/config_archive.xml
D src/components/data_comps_mct/dice/cime_config/config_component.xml
D src/components/data_comps_mct/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps_mct/dice/cime_config/user_nl_dice
D src/components/data_comps_mct/dice/src/dice_comp_mod.F90
D src/components/data_comps_mct/dice/src/dice_flux_atmice_mod.F90
D src/components/data_comps_mct/dice/src/dice_shr_mod.F90
D src/components/data_comps_mct/dice/src/ice_comp_mct.F90
D src/components/data_comps_mct/dlnd/cime_config/buildlib
D src/components/data_comps_mct/dlnd/cime_config/buildlib_cmake
D src/components/data_comps_mct/dlnd/cime_config/buildnml
D src/components/data_comps_mct/dlnd/cime_config/config_archive.xml
D src/components/data_comps_mct/dlnd/cime_config/config_component.xml
D src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
D src/components/data_comps_mct/dlnd/cime_config/user_nl_dlnd
D src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
D src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
D src/components/data_comps_mct/dlnd/src/lnd_comp_mct.F90
D src/components/data_comps_mct/docn/cime_config/buildlib
D src/components/data_comps_mct/docn/cime_config/buildlib_cmake
D src/components/data_comps_mct/docn/cime_config/buildnml
D src/components/data_comps_mct/docn/cime_config/config_archive.xml
D src/components/data_comps_mct/docn/cime_config/config_component.xml
D src/components/data_comps_mct/docn/cime_config/namelist_definition_docn.xml
D src/components/data_comps_mct/docn/cime_config/user_nl_docn
D src/components/data_comps_mct/docn/src/docn_comp_mod.F90
D src/components/data_comps_mct/docn/src/docn_shr_mod.F90
D src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
D src/components/data_comps_mct/docn/tools/pop_som_frc/README
D src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.doc
D src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.pdf
D src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc.csh
D src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlann.ncl
D src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlt.ncl
D src/components/data_comps_mct/docn/tools/pop_som_frc/pop_interp.ncl
D src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss.csh
D src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss_month.csh
D src/components/data_comps_mct/drof/cime_config/buildlib
D src/components/data_comps_mct/drof/cime_config/buildlib_cmake
D src/components/data_comps_mct/drof/cime_config/buildnml
D src/components/data_comps_mct/drof/cime_config/config_archive.xml
D src/components/data_comps_mct/drof/cime_config/config_component.xml
D src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
D src/components/data_comps_mct/drof/cime_config/user_nl_drof
D src/components/data_comps_mct/drof/src/drof_comp_mod.F90
D src/components/data_comps_mct/drof/src/drof_shr_mod.F90
D src/components/data_comps_mct/drof/src/rof_comp_mct.F90
D src/components/data_comps_mct/dwav/README
D src/components/data_comps_mct/dwav/cime_config/buildlib
D src/components/data_comps_mct/dwav/cime_config/buildlib_cmake
D src/components/data_comps_mct/dwav/cime_config/buildnml
D src/components/data_comps_mct/dwav/cime_config/config_archive.xml
D src/components/data_comps_mct/dwav/cime_config/config_component.xml
D src/components/data_comps_mct/dwav/cime_config/namelist_definition_dwav.xml
D src/components/data_comps_mct/dwav/cime_config/user_nl_dwav
D src/components/data_comps_mct/dwav/src/dwav_comp_mod.F90
D src/components/data_comps_mct/dwav/src/dwav_shr_mod.F90
D src/components/data_comps_mct/dwav/src/wav_comp_mct.F90
D src/components/stub_comps_mct/satm/cime_config/buildlib
D src/components/stub_comps_mct/satm/cime_config/buildlib_cmake
D src/components/stub_comps_mct/satm/cime_config/buildnml
D src/components/stub_comps_mct/satm/cime_config/config_component.xml
D src/components/stub_comps_mct/satm/src/atm_comp_mct.F90
D src/components/stub_comps_mct/sesp/cime_config/buildlib
D src/components/stub_comps_mct/sesp/cime_config/buildlib_cmake
D src/components/stub_comps_mct/sesp/cime_config/buildnml
D src/components/stub_comps_mct/sesp/cime_config/config_component.xml
D src/components/stub_comps_mct/sesp/src/esp_comp_mct.F90
D src/components/stub_comps_mct/sglc/cime_config/buildlib
D src/components/stub_comps_mct/sglc/cime_config/buildlib_cmake
D src/components/stub_comps_mct/sglc/cime_config/buildnml
D src/components/stub_comps_mct/sglc/cime_config/config_component.xml
D src/components/stub_comps_mct/sglc/src/glc_comp_mct.F90
D src/components/stub_comps_mct/siac/cime_config/buildlib
D src/components/stub_comps_mct/siac/cime_config/buildlib_cmake
D src/components/stub_comps_mct/siac/cime_config/buildnml
D src/components/stub_comps_mct/siac/cime_config/config_component.xml
D src/components/stub_comps_mct/siac/src/iac_comp_mct.F90
D src/components/stub_comps_mct/sice/cime_config/buildlib
D src/components/stub_comps_mct/sice/cime_config/buildlib_cmake
D src/components/stub_comps_mct/sice/cime_config/buildnml
D src/components/stub_comps_mct/sice/cime_config/config_component.xml
D src/components/stub_comps_mct/sice/src/ice_comp_mct.F90
D src/components/stub_comps_mct/slnd/cime_config/buildlib
D src/components/stub_comps_mct/slnd/cime_config/buildlib_cmake
D src/components/stub_comps_mct/slnd/cime_config/buildnml
D src/components/stub_comps_mct/slnd/cime_config/config_component.xml
D src/components/stub_comps_mct/slnd/src/lnd_comp_mct.F90
D src/components/stub_comps_mct/socn/cime_config/buildlib
D src/components/stub_comps_mct/socn/cime_config/buildlib_cmake
D src/components/stub_comps_mct/socn/cime_config/buildnml
D src/components/stub_comps_mct/socn/cime_config/config_component.xml
D src/components/stub_comps_mct/socn/src/ocn_comp_mct.F90
D src/components/stub_comps_mct/srof/cime_config/buildlib
D src/components/stub_comps_mct/srof/cime_config/buildlib_cmake
D src/components/stub_comps_mct/srof/cime_config/buildnml
D src/components/stub_comps_mct/srof/cime_config/config_component.xml
D src/components/stub_comps_mct/srof/src/rof_comp_mct.F90
D src/components/stub_comps_mct/swav/cime_config/buildlib
D src/components/stub_comps_mct/swav/cime_config/buildlib_cmake
D src/components/stub_comps_mct/swav/cime_config/buildnml
D src/components/stub_comps_mct/swav/cime_config/config_component.xml
D src/components/stub_comps_mct/swav/src/wav_comp_mct.F90
M src/components/stub_comps_nuopc/satm/cime_config/buildnml
M src/components/stub_comps_nuopc/sesp/cime_config/buildnml
M src/components/stub_comps_nuopc/sglc/cime_config/buildnml
M src/components/stub_comps_nuopc/siac/cime_config/buildnml
M src/components/stub_comps_nuopc/sice/cime_config/buildnml
M src/components/stub_comps_nuopc/slnd/cime_config/buildnml
M src/components/stub_comps_nuopc/socn/cime_config/buildnml
M src/components/stub_comps_nuopc/srof/cime_config/buildnml
M src/components/stub_comps_nuopc/swav/cime_config/buildnml
D src/components/xcpl_comps_mct/xatm/cime_config/buildlib
D src/components/xcpl_comps_mct/xatm/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xatm/cime_config/buildnml
D src/components/xcpl_comps_mct/xatm/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xatm/src/atm_comp_mct.F90
D src/components/xcpl_comps_mct/xglc/cime_config/buildlib
D src/components/xcpl_comps_mct/xglc/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xglc/cime_config/buildnml
D src/components/xcpl_comps_mct/xglc/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xglc/src/glc_comp_mct.F90
D src/components/xcpl_comps_mct/xice/cime_config/buildlib
D src/components/xcpl_comps_mct/xice/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xice/cime_config/buildnml
D src/components/xcpl_comps_mct/xice/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xice/src/ice_comp_mct.F90
D src/components/xcpl_comps_mct/xlnd/cime_config/buildlib
D src/components/xcpl_comps_mct/xlnd/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xlnd/cime_config/buildnml
D src/components/xcpl_comps_mct/xlnd/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xlnd/src/lnd_comp_mct.F90
D src/components/xcpl_comps_mct/xocn/cime_config/buildlib
D src/components/xcpl_comps_mct/xocn/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xocn/cime_config/buildnml
D src/components/xcpl_comps_mct/xocn/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xocn/src/ocn_comp_mct.F90
D src/components/xcpl_comps_mct/xrof/cime_config/buildlib
D src/components/xcpl_comps_mct/xrof/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xrof/cime_config/buildnml
D src/components/xcpl_comps_mct/xrof/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xrof/src/rof_comp_mct.F90
D src/components/xcpl_comps_mct/xshare/dead_data_mod.F90
D src/components/xcpl_comps_mct/xshare/dead_mct_mod.F90
D src/components/xcpl_comps_mct/xshare/dead_mod.F90
D src/components/xcpl_comps_mct/xwav/cime_config/buildlib
D src/components/xcpl_comps_mct/xwav/cime_config/buildlib_cmake
D src/components/xcpl_comps_mct/xwav/cime_config/buildnml
D src/components/xcpl_comps_mct/xwav/cime_config/config_component.xml
D src/components/xcpl_comps_mct/xwav/src/wav_comp_mct.F90
M src/components/xcpl_comps_nuopc/xatm/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xglc/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xice/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xlnd/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xocn/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xrof/cime_config/buildnml
M src/components/xcpl_comps_nuopc/xwav/cime_config/buildnml
D src/drivers/mct/cime_config/buildexe
D src/drivers/mct/cime_config/buildlib_cmake
D src/drivers/mct/cime_config/buildnml
D src/drivers/mct/cime_config/config_archive.xml
D src/drivers/mct/cime_config/config_component.xml
D src/drivers/mct/cime_config/config_component_cesm.xml
D src/drivers/mct/cime_config/config_component_e3sm.xml
D src/drivers/mct/cime_config/config_compsets.xml
D src/drivers/mct/cime_config/config_pes.xml
D src/drivers/mct/cime_config/namelist_definition_drv.xml
D src/drivers/mct/cime_config/namelist_definition_drv_flds.xml
D src/drivers/mct/cime_config/namelist_definition_modelio.xml
D src/drivers/mct/cime_config/testdefs/testlist_drv.xml
D src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
D src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
D src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/som/shell_commands
D src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/y100k/README
D src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/y100k/shell_commands
D src/drivers/mct/cime_config/user_nl_cpl
D src/drivers/mct/main/CMakeLists.txt
D src/drivers/mct/main/cime_comp_mod.F90
D src/drivers/mct/main/cime_driver.F90
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D src/share/util/shr_msg_mod.F90
D src/share/util/shr_ncread_mod.F90
D src/share/util/shr_nl_mod.F90
D src/share/util/shr_orb_mod.F90
D src/share/util/shr_pcdf_mod.F90
D src/share/util/shr_pio_mod.F90
D src/share/util/shr_precip_mod.F90
D src/share/util/shr_reprosum_mod.F90
D src/share/util/shr_reprosumx86.c
D src/share/util/shr_scam_mod.F90
D src/share/util/shr_spfn_mod.F90
D src/share/util/shr_strconvert_mod.F90
D src/share/util/shr_string_mod.F90
D src/share/util/shr_sys_mod.F90
D src/share/util/shr_taskmap_mod.F90
D src/share/util/shr_timer_mod.F90
D src/share/util/shr_vmath_mod.F90
D src/share/util/shr_wv_sat_mod.F90
D src/share/util/water_isotopes.F90
D src/share/util/water_types.F90
M tools/configure
M tools/cprnc/CMakeLists.txt
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-11-2021
Tag: cime5.8.47
Answer Changes: None
Tests: SMS_D_Lm1_Mmpi-serial.CLM_USRDAT.I1PtClm50SpRs.cheyenne_intel.clm-USUMB
Dependencies:
Brief Summary:
- Add back domain for CLM_USRDAT for mct driver.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
f01e48081 Merge pull request #3954 from jedwards4b/fix_clm_usrdata_mct
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-10-2021
Tag: cime5.8.46
Answer Changes: None
Tests: subset of aux_glc
Dependencies:
Brief Summary:
- Rename GLC Greenland grid from "gland" to "gris"
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a52e7faf6 Merge pull request #3943 from billsacks/rename_gland
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M src/drivers/mct/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-7-2021
Tag: cime5.8.45
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Update this so that paths with % in them do not break cism build.
- Fix res for nuopc.
- Add cice6 as an new CESM component.
- Change behavior of check on DIN_LOC_ROOT in case_setup.py.
- Reset a test that is rerun after a run failure.
- Adds git submodule info to provenance.
- Fixes phase 1 of multisubmit not executing during rerun.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1e72b5db7 Merge pull request #3956 from jedwards4b/GLCMakefile
5c15fb06e Merge pull request #3945 from jedwards4b/srt_fix_for_nuopc
b325c7109 Merge pull request #3952 from mvertens/features/add_cice6
7c99238d7 Merge pull request #3925 from briandobbins/container_inputdata
b95a28b41 Merge pull request #3939 from billsacks/fix_retry
56a2ca18e Merge pull request #3949 from jasonb5/update_git_provenance
205c5dd48 Merge pull request #3924 from jasonb5/fix_pet_multisubmit
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/config_tests.xml
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/case_fake.py
A scripts/lib/CIME/tests/test_provenance.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-3-2021
Tag: cime5.8.44
Answer Changes: None
Tests: ERS_Ld3.f19_f19_mg17.FXHIST.cheyenne_intel.cam-waccmx_weimer
scrtips_regression_tests
Dependencies:
Brief Summary:
- Revert cheyenne intel mpt to 2.22.
- Change shebang to explict python3.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
6cbfdd632 Merge pull request #3951 from ESMCI/fischer/mpt_cheyenne
296aeaf4a Merge pull request #3948 from jedwards4b/move_to_py3
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/cs.status
M scripts/Tools/e3sm_check_env
M scripts/Tools/generate_cylc_workflow.py
M scripts/Tools/getTiming
M scripts/Tools/get_case_env
M scripts/Tools/get_standard_makefile_args
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_e3sm_tests
M scripts/Tools/mvsource
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/testreporter.py
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/query_config
M scripts/query_testlists
M scripts/tests/list_tests
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fiscehr
Date: 4-26-2021
Tag: cime5.8.43
Answer Changes: None
Tests: scripts_regression_tests, aux_cime_baselines
Dependencies:
Brief Summary:
- Update intel compiler and esmf on cheyenne.
- Fix issue to build a testcase on Casper through an interactive node.
- Fix py3 error in srun syntax.
- Remove "Code review" line from PR template.
- Add support for WAV as primary component.
- Update case status to include jobid on batch system.
- Allow E3SM to use its versions of coupler and data,stub,x models.
- Add neon server to inputdata.
- Fix create_test --retry when generating baselines.
- Generalize build directory paths, and prep for CESM share repository.
- Fix ChangeLog.
- Update configuration xml for Casper and add openacc directives to enable GPU simulation.
- Fix query_config for py3 output format.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
40be61f38 Merge pull request #3941 from ESMCI/fischer/cheyenne_intel
2b2a18dd0 Merge pull request #3942 from sjsprecious/master
83ddb3e4e fix py3 error in srun syntax
8b48a2e2d Merge pull request #3938 from billsacks/pr_template_cleanup
6407bc297 Merge pull request #3935 from sbrus89/wav_primary_fix
44b241d26 Merge pull request #3926 from jasonb5/update_case_status
ebdb29719 Merge pull request #3930 from ESMCI/rljacob/move-for-e3sm
e256ea7ad Merge pull request #3927 from jedwards4b/add_neon_to_inputdata
f5433921b Merge pull request #3914 from billsacks/retry_baseline_overwrite
599e0bdd5 Merge pull request #3917 from ESMCI/fischer/cime_sep
25d85e50c Update for cime5.8.41 and cime5.8.42
86f0fc800 Merge pull request #3922 from sjsprecious/master
7aa6b0c26 Merge pull request #3921 from jedwards4b/query_config_py3_update
Modified files: git diff --name-status [previous_tag]
M .github/PULL_REQUEST_TEMPLATE
M ChangeLog
M config/cesm/config_inputdata.xml
A config/cesm/machines/Depends.nvhpc-gpu
A config/cesm/machines/Depends.pgi-gpu
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M scripts/Tools/Makefile
M scripts/create_test
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib_cmake.internal_components
M src/share/util/shr_spfn_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-8-2021
Tag: cime5.8.42
Answer Changes: None
Tests: hand tested and scripts_regression_tests
Dependencies:
Brief Summary:
- No need to test ESMF_AWARE_THREADING here.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b655c9127 Merge pull request #3918 from jedwards4b/ninst_fix
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/env_mach_pes.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 4-6-2021
Tag: cime5.8.41
Answer Changes: Climate Changing just for T compsets.
Tests: scripts_regression_tests
SMS_Vnuopc_D_P1x1.f10_f10_mg37.I2000Clm50Sp.izumi_nag.clm-default
Dependencies:
Brief Summary:
- Save Scorpio I/O statistics.
- Support for threading in two different ways for esmf.
- Fix issue with build of nag mpiserial.
- Handle case when domain_root is not present.
- Point to new dlnd scpl forcing data.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
81d4f2033 Merge pull request #3904 from ESMCI/jayeshkrishna/spio_stats_provenance
ada43e1c9 Merge pull request #3899 from jedwards4b/esmf_threading
b86d2e1b5 Merge pull request #3908 from jedwards4b/izumi_nag_mpiserial_fix
000b3c7d5 Merge pull request #3903 from jedwards4b/domain_root_fix
af4d0ae47 Merge pull request #3901 from billsacks/dlnd_new_glc_forcings
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/machines/config_machines.xml
M scripts/Tools/pelayout
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/provenance.py
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-30-2021
Tag: cime5.8.40
Answer Changes:
Tests:
Dependencies:
Brief Summary:
- Bug fix for generating C/G nuopc compsets
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a900c8ef6 Merge pull request #3900 from mvertens/feature/nuopc_grids_bugfix
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/grids.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-26-2021
Tag: cime5.8.39
Answer Changes: Round Off for nuopc/cmeps configurations.
Tests: scripts_regression_tests, SMS_D_Ld6_Mmpi-serial_Vnuopc.1x1_smallvilleIA.IHistClm45BgcCropQianRs,
SMS_D_Ld6_Mmpi-serial_Vnuopc.1x1_smallvilleIA.IHistClm45BgcCropQianRs
Dependencies:
Brief Summary:
- Add ROF support in the primary component computation.
- Bug fix for single column mode for nuopc/cmeps.
- Fixes to nuopc single column PTS_LAT and PTS_LON.
- Switch e3sm config to COMP_ROOT_DIR.
- Fix format descriptor in mem-logging for IBM compiler.
- Bump pillow from 7.1.2 to 8.1.1 in /tools/statistical_ensemble_test/pyCECT/docs.
- Bug fix for specifying mesh for 0.25 degree runoff grid.
- Changes for zeus port.
- Avoid adding CDEPS things to inc & lib paths with LILAC.
- New nuopc/cmeps single/column single/point functionality.
- Logs tail of cprnc outputs to TestStatus.log.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1e705ee39 Merge pull request #3895 from ESMCI/jgfouca/add_rof_support_to_primary_comp
f00ba9e2c Merge pull request #3898 from ESMCI/mvertens/scol_bugfix
4d16c5b91 Merge pull request #3894 from ESMCI/mvertens/scol_bugfix
92e0ecfbe Merge pull request #3891 from ESMCI/rljacob/update-e3sm-config
de4a1e282 Merge pull request #3879 from ESMCI/azamat/mprof/replace-indef-fmt-xlf
cd997cab8 Merge pull request #3890 from ESMCI/dependabot/pip/tools/statistical_ensemble_test/pyCECT/docs/pillow-8.1.1
0cd2268d5 Merge pull request #3889 from ESMCI/mvertens/drof_mesh_bugfix
4822938a0 Merge pull request #3880 from ESMCI/peano/zeus_update_port
929fd466e Merge pull request #3882 from billsacks/no_cdeps_libs_with_lilac
17a980fbf Merge pull request #3884 from ESMCI/mvertens/scol
47514026c Merge pull request #3861 from jasonb5/log_cprnc_tail
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
R076 config/xml_schemas/config_grids_v2.1.xsd config/xml_schemas/config_grids_v2.2.xsd
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M src/drivers/mct/main/cime_comp_mod.F90
M tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-12-2021
Tag: cime5.8.38
Answer Changes: bit-for-bit, climate-changing for trigrid
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
User interface changes:
- Disable kokkos tests when building for E3SM.
- Remove references to CISM1-only grid for CESM.
- NAG port for nuopc.
- Generalize the file pattern match for cism.config files.
- Add header row and perf-archiving to memory profiling logs.
- Add run scripts to provenance capture.
- Make 64bit data default netcdf format.
- PIO2 update.
- Enable 2010 SST climatology for all variants of F-2010 compsets.
- Improve check_input_data tool.
- Fixes case where a skipped test would result in logfile_name being undefined.
- SCORPIO needs _PNETCDF.
- nuopc result is in drv.log not med.log.
- Adds support of DATM_MODE=CLM1PT for ELM.
- Introduction of MASK_GRID for CMEPS.
- Fixes cleaning up only on success.
- bless/compare_test_results should not process build-only tests.
- Minor changes to Makefile needed for izumi nag build to link to ESMF lib.
- Update driver-mct support for trigrid configuration where lnd is not on the atm grid.
- Make update success more robust.
- env_mach_specific needs to process all mpirun nodes from machobj.
- Add a new env_run XML value for E3SM: CASE_GROUP.
- Turn PIO_USE_MALLOC back on.
- Add machine frontera and fix run_exe setting issue.
- Remove collapse directives for Cray compiler.
- Fix some documentation of EXEROOT.
- Fix i4 in shr_reposum_mod and add comments.
PR summary: git log --oneline --first-parent [previous_tag]..master
33f236c48 Merge pull request #3881 from ESMCI/jgfouca/disable_kokkos_tests
3321317ff Merge pull request #3785 from billsacks/remove_cism1
d67b18ec7 Merge pull request #3878 from jedwards4b/nag_port
75e8f7af6 Merge pull request #3869 from billsacks/generalize_cism_config
fd30d9c1f Merge pull request #3875 from ESMCI/azamat/mprof/add-header-archiving
b164a7f5b Merge pull request #3873 from sarats/sarats/capture-runscripts-provenance
56c121ed8 Merge pull request #3870 from jedwards4b/make_64bit_data_default
162767bde Merge pull request #3859 from jedwards4b/pio2_update
5253df01c Merge pull request #3867 from ESMCI/wlin/F2010_sstdata
e76f2cef8 Merge pull request #3711 from ESMCI/wpcoomb/improve_check_input_data_tool
2b49cf54f Merge pull request #3860 from jasonb5/fix_compare_test_results_undefined
5382666a7 Merge pull request #3864 from ESMCI/jgfouca/fix_for_makefile
9fd7ee81c Merge pull request #3863 from jedwards4b/nuopc_log_fix
3f5a34720 Merge pull request #3845 from ESMCI/bishtgautam/user-defined-forcing-for-elm
2604dd663 Merge pull request #3841 from ESMCI/mvertens/bugfixes_auxcam
af03e9868 Merge pull request #3847 from jasonb5/fix_directory_removal
f90d23a50 Merge pull request #3855 from ESMCI/jgfouca/fix_test_results_for_B
dbf9f538a Merge pull request #3856 from fvitt/izumi_esmflib
55704c82a Merge pull request #3853 from ESMCI/jonbob/update-trigrid-support
78448a114 Merge pull request #3851 from ESMCI/jgfouca/update_success_robust
6f2688798 Merge pull request #3848 from ESMCI/jgfouca/fix_mpirun_env_mach_specific
743a2c967 Merge pull request #3844 from ESMCI/jgfouca/add_case_group
d088f9826 Merge pull request #3843 from ESMCI/jgfouca/e3sm_cime_temp
ef6b28c80 Merge pull request #3836 from jedwards4b/add_frontera_fix_run_exe_xml_issue
6335dd8b8 Merge pull request #3830 from ESMCI/azamat/mct-cime/rm-collapse-for-cray
664376d67 Merge pull request #3840 from billsacks/fix_doc_exeroot
0940e6a6d Merge pull request #3839 from ESMCI/worleyph/reprosum_i4_fix
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M doc/source/users_guide/running-a-case.rst
M scripts/Tools/Makefile
M scripts/create_newcase
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/provenance.py
A scripts/lib/CIME/tests/test_compare_test_results.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/components/data_comps_mct/datm/cime_config/buildnml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_frac_mct.F90
M src/externals/mct/mct/m_AttrVect.F90
M src/externals/pio2/.github/workflows/cmake.yml
A src/externals/pio2/.github/workflows/cmake_netcdf-4.7.4_hdf5-1.10.7_pnetcdf-12.1_ncint_mpich-3.3_asan.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.10.7_pnetcdf-12.1_ncint_mpich-3.3_asan.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.12.0_no_pnetcdf_ncint_mpich-3.3.yml
A src/externals/pio2/.github/workflows/netcdf-4.7.4_hdf5-1.12.0_pnetcdf-12.2_ncint_mpich-3.3_asan.yml
R100 src/externals/pio2/.github/workflows/a4.yml src/externals/pio2/.github/workflows/netcdf-4.7.4_pnetcdf-12.1_ncint_mpich-3.3.yml
R100 src/externals/pio2/.github/workflows/a3.yml src/externals/pio2/.github/workflows/netcdf-4.7.4_pnetcdf-12.1_ncint_openmpi_4.0.4.yml
R100 src/externals/pio2/.github/workflows/strict_autotools.yml src/externals/pio2/.github/workflows/strict_autotools_ubuntu_latest.yml
M src/externals/pio2/README.md
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestScript-Test.cmake
A src/externals/pio2/doc/images/I_O_on_many_async_small.png
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/pio_tests.h
M src/externals/pio2/tests/cunit/run_tests.sh.in
M src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_darray_multivar.c
M src/externals/pio2/tests/cunit/test_darray_multivar3.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_simple.c
M src/externals/pio2/tests/fncint/ftst_pio_orig.f90
M src/externals/pio2/tests/ncint/pio_err_macros.h
M src/externals/pio2/tests/ncint/tst_var_compress.c
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_reprosum_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 1-27-2021
Tag: cime5.8.37
Answer Changes: Some fill_values and pgi on cheyenne
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- wait_for_tests: tweak cdash nml compare column.
- Pio bld fixes.
- pnetcdf detection correction.
- Added deleted f10_f10_musgs grid back into config_grids.xml.
- Changes needed to create fractions/masks at runtime with NUOPC.
- Better create_test/wait_for_tests integration.
- Add support for Chrysalis in saving provenance info.
- Remove unused logic.
- Update PIO2 to latest version and add testing support for PIO async tests.
- Update esmf to latest on cheyenne.
- Add pnetcdf module to centos7-linux build.
- Allow srt to skip some tests.
- Pass integer and not floating point for cpus-per-task.
- Need to get queue from case, not batch object.
- Update cheyenne esmf build.
- Seq io fix pio2.
- Add some SCREAM config dirs.
- Update to PyCECT 3.2.0.
- Update pgi and esmf on cheyenne.
- Add memory usage logging.
- Facilitate adding defaults for a namelist group conditionally.
- Add a mask.
- Check if TEST_ROOT exists earlier in cleanup from scripts_regression_tests.
- query_testlists: replace newlines in comments with spaces.
User interface changes:
- Slight change to output of query_testlists
PR summary: git log --oneline --first-parent [previous_tag]..master
d005fc583 Merge pull request #3829 from ESMCI/jgfouca/tweak_cdash_nml_output
1c949c056 Merge pull request #3837 from jedwards4b/pio_bld_fixes
738bd23c4 Merge pull request #3822 from jedwards4b/pio2_pnetcdf_detection
6df28a93b Merge pull request #3832 from ESMCI/mvertens/bugfix_f10maskusgs
79ad32f53 Merge pull request #3827 from ESMCI/mvertens/dynfrac
6834f9da8 Merge pull request #3824 from ESMCI/jgfouca/misc_cime_updates
10675d59e Merge pull request #3819 from ESMCI/worleyph/chrysalis_support
cc2fa1c85 Merge pull request #3809 from ESMCI/jgfouca/minor_makefile_cleanup
b71c1f341 Merge pull request #3817 from jedwards4b/pio_async
c0b4e0714 update esmf to latest on cheyenne
52e50f9f1 add pnetcdf module to centos7-linux build
c9c7f88e2 Merge pull request #3821 from jedwards4b/skip_tests
93243a4d8 Merge pull request #3820 from adityakavalur/patch-1
7e9ee92fa need to get queue from case, not batch object
c6a0fe00e update cheyenne esmf build
d74ba19a7 Merge pull request #3811 from jedwards4b/seq_io_fix_pio2
56a4ebb62 Merge pull request #3813 from ESMCI/jgfouca/add_scream_config_files
00a9e6205 Merge pull request #3812 from ESMCI/fischer/pycect_update
2818cf59c Merge pull request #3803 from jedwards4b/cheyenne_pgi
aecb9b1dc Merge pull request #3801 from ESMCI/azamat/driver/mem-profile-logging
ac45f7a7e Merge pull request #3804 from billsacks/nmlgen_skip_groups
6dc716233 Merge pull request #3800 from jedwards4b/add_a_mask
0d18eabfa Merge pull request #3798 from ESMCI/wpcoomb_fix_cleanup_in_regression_tests
22276aad9 Merge pull request #3797 from billsacks/no_newline_in_query_testlists
Modified files: git diff --name-status [previous_tag]
M .github/workflows/srt.yml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M config/xml_schemas/config_grids_v2.1.xsd
M config/xml_schemas/config_grids_v2.xsd
M scripts/Tools/Makefile
M scripts/Tools/cime_bisect
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_run.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/cs_status.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/externals/pio2/.gitignore
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/configure.ac
M src/externals/pio2/examples/CMakeLists.txt
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/example2.c
M src/externals/pio2/examples/f03/CMakeLists.txt
A src/externals/pio2/examples/f03/exampleAsyncPio.F90
M src/externals/pio2/examples/f03/examplePio.F90
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_error.h
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/ncint_mod.F90
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
M src/externals/pio2/tests/cunit/test_async_manyproc.c
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_async.c
A src/externals/pio2/tests/cunit/test_darray_async_from_comm.c
M src/externals/pio2/tests/cunit/test_darray_async_many.c
M src/externals/pio2/tests/cunit/test_darray_async_simple.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/fncint/ftst_pio.f90
M src/externals/pio2/tests/general/CMakeLists.txt
M src/externals/pio2/tests/general/Makefile.am
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_2d_async.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_2d_halo.F90.in
A src/externals/pio2/tests/general/pio_decomphalo_tests_2d.F90.in
A src/externals/pio2/tests/general/pio_iosystem_async_tests.F90.in
M src/externals/pio2/tests/general/run_tests.sh.in
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/general/util/pio_tutil.F90
M src/externals/pio2/tests/ncint/pio_err_macros.h
M src/externals/pio2/tests/performance/pioperformance.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
A tools/statistical_ensemble_test/pyCECT/CHANGES.rst
M tools/statistical_ensemble_test/pyCECT/EET.py
M tools/statistical_ensemble_test/pyCECT/LICENSE.txt
A tools/statistical_ensemble_test/pyCECT/README.rst
D tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
D tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
D tools/statistical_ensemble_test/pyCECT/README_pyEnsSumPop.rst
D tools/statistical_ensemble_test/pyCECT/beta06_ens_excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/beta06_ens_excluded_varlist_a.json
A tools/statistical_ensemble_test/pyCECT/docs/Makefile
A tools/statistical_ensemble_test/pyCECT/docs/conf.py
A tools/statistical_ensemble_test/pyCECT/docs/index.rst
A tools/statistical_ensemble_test/pyCECT/docs/make.bat
A tools/statistical_ensemble_test/pyCECT/docs/requirements.txt
A tools/statistical_ensemble_test/pyCECT/docs/source/installation.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyCECT.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSum.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/pyEnsSumPop.rst
A tools/statistical_ensemble_test/pyCECT/docs/source/readme.rst
R100 tools/statistical_ensemble_test/pyCECT/exclude_empty.json tools/statistical_ensemble_test/pyCECT/empty_excluded.json
D tools/statistical_ensemble_test/pyCECT/ens_excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/ens_sub.pbs
D tools/statistical_ensemble_test/pyCECT/ens_sub.sh
A tools/statistical_ensemble_test/pyCECT/excluded_varlist.json
D tools/statistical_ensemble_test/pyCECT/gm_cumul.sh
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
A tools/statistical_ensemble_test/pyCECT/pyPlots.py
A tools/statistical_ensemble_test/pyCECT/readthedocs.yml
M tools/statistical_ensemble_test/pyCECT/test_pop_CECT.sh
A tools/statistical_ensemble_test/pyCECT/test_pyEnsSum.sh
M tools/statistical_ensemble_test/pyCECT/test_pyEnsSumPop.sh
A tools/statistical_ensemble_test/pyCECT/test_uf_cam_ect.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-11-2020
Tag: cime5.8.36
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Add a useful check to wait_for_tests.
- Fix issue with time variable in ha files.
- Revert "Merge pull request #3788 from ESMCI/azamat/driver/mem-usage-logging."
- Add memory usage logging for memory profiling.
- Update OS process id error-checking in GPTL's get_memusage.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a0fb01a33 Merge pull request #3796 from ESMCI/jgfouca/wait_for_tests_expect
7c9523ef3 Merge pull request #3794 from jedwards4b/cplhistavg_fix
c258cdf08 Merge pull request #3791 from ESMCI/jgfouca/revert_mem-usage-logging
9c64b5ac2 Merge pull request #3788 from ESMCI/azamat/driver/mem-usage-logging
5cef5558c Merge pull request #3781 from ESMCI/azamat/gptl/increase-pid-ceiling
Modified files: git diff --name-status [previous_tag]
A .github/workflows/srt.yml
D .travis.yml
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_grids_nuopc.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/Depends.intel
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/config_tests.xml
D config/e3sm/allactive/config_compsets.xml
D config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/testlist_allactive.xml
D config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
D config/e3sm/config_grids.xml
D config/e3sm/config_inputdata.xml
D config/e3sm/machines/Depends.cray
D config/e3sm/machines/Depends.cray.cmake
D config/e3sm/machines/Depends.gnu
D config/e3sm/machines/Depends.gnu.cmake
D config/e3sm/machines/Depends.ibm
D config/e3sm/machines/Depends.ibm.cmake
D config/e3sm/machines/Depends.intel
D config/e3sm/machines/Depends.intel.cmake
D config/e3sm/machines/Depends.nag
D config/e3sm/machines/Depends.nag.cmake
D config/e3sm/machines/Depends.summit.cmake
D config/e3sm/machines/Depends.summit.pgiacc
D config/e3sm/machines/Depends.summit.pgiacc.cmake
D config/e3sm/machines/Depends.summit.pgigpu
D config/e3sm/machines/Depends.summit.pgigpu.cmake
D config/e3sm/machines/Depends.summitdev.pgiacc
D config/e3sm/machines/Depends.summitdev.pgiacc.cmake
D config/e3sm/machines/README
D config/e3sm/machines/config_batch.xml
D config/e3sm/machines/config_compilers.xml
D config/e3sm/machines/config_machines.xml
D config/e3sm/machines/config_pio.xml
D config/e3sm/machines/config_workflow.xml
D config/e3sm/machines/syslog.anvil
D config/e3sm/machines/syslog.compy
D config/e3sm/machines/syslog.cori-haswell
D config/e3sm/machines/syslog.cori-knl
D config/e3sm/machines/syslog.noop
D config/e3sm/machines/syslog.summit
D config/e3sm/machines/syslog.theta
D config/e3sm/machines/syslog.titan
D config/e3sm/machines/template.case.run
D config/e3sm/machines/template.case.run.sh
D config/e3sm/machines/template.case.test
D config/e3sm/machines/template.ocn_diagnostics
D config/e3sm/machines/template.st_archive
D config/e3sm/machines/template.timeseries
D config/e3sm/machines/userdefined_laptop_template/README.md
D config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
D config/e3sm/machines/userdefined_laptop_template/config_machines.xml
D config/e3sm/machines/userdefined_laptop_template/config_pes.xml
D config/e3sm/testmods_dirs/allactive/force_netcdf_pio/shell_commands
D config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
D config/e3sm/testmods_dirs/allactive/mach_mods/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1cmip6/README
D config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
D config/e3sm/testmods_dirs/bench/gmpas_noio/shell_commands
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/hires/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/lores/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_clm
D config/e3sm/tests.py
D config/e3sm/usermods_dirs/README
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/entry_id_base.xsd
M config/xml_schemas/entry_id_base_version3.xsd
M config/xml_schemas/env_mach_specific.xsd
M config/xml_schemas/testlist.xsd
M scripts/Tools/Makefile
M scripts/Tools/case.build
D scripts/Tools/e3sm_cime_merge
D scripts/Tools/e3sm_cime_split
A scripts/Tools/e3sm_compile_wrap.py
M scripts/Tools/jenkins_generic_job
A scripts/Tools/mvsource
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.pio
M src/build_scripts/buildlib_cmake.internal_components
M src/components/data_comps_mct/datm/cime_config/buildnml
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/datm/src/datm_comp_mod.F90
M src/components/data_comps_mct/datm/src/datm_shr_mod.F90
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/data_comps_mct/docn/src/docn_comp_mod.F90
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M src/drivers/mct/main/seq_io_mod.F90
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M src/externals/mct/mpeu/m_inpak90.F90
M src/externals/mct/mpeu/m_ioutil.F90
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M src/share/util/shr_cal_mod.F90
M src/share/util/shr_kind_mod.F90
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_scam_mod.F90
M src/share/util/shr_string_mod.F90
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M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/control_int.nc
A tools/cprnc/test_inputs/int_missing.nc
M tools/statistical_ensemble_test/ensemble.py
M tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-7-2020
Tag: cime5.8.35
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Make the default pio_version = 2.
- Changes for nuopc xcpl_comps needed for new ice sheets capability.
- Print TPUTCOMP difference to TestStatus.log.
- Correct typo in pgi module on cheyenne.
- Changes to implement ESMF aware threading in the nuopc driver.
- Add back pio version cpp.
- Fix pgi nuopc build issue.
- More e3sm build upgrades.
- Fix some build issues, for nuopc and cam_dycore.
- Build nuopc_cap with csm_share.
- Update seq_io_write_time to work for CPLHIST run.
- Fix python3 incompatibilities in case.py.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
184f5886f Merge pull request #3732 from jedwards4b/change_pio_default_version
bfe14e4aa Merge pull request #3787 from ESMCI/mvertens/icesheets
ca6712bb8 Merge pull request #3786 from billsacks/log_tputcomp
aff5b52e2 correct typo in pgi module on cheyenne
13996b82d Merge pull request #3784 from jedwards4b/nuopc_timing_cheyenne_esmf
1bcacca70 add back pio version cpp
073f83989 fix pgi nuopc build issue
55b6096ec Merge pull request #3782 from ESMCI/jgfouca/more_e3sm_build_upgrades
c06710482 Merge pull request #3779 from jedwards4b/fix_bld_issues
9db73e464 Merge pull request #3777 from jedwards4b/add_cap_share_to_csm
e23562c59 Merge pull request #3754 from ESMCI/jonbob/update-seq-io-write-time
1b7eb3e18 Merge pull request #3765 from johnsonb-ucar/fix_python3_incompatibility_in_case
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/Makefile
M scripts/Tools/preview_run
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/provenance.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.pio
M src/components/xcpl_comps_nuopc/xatm/src/atm_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xice/src/ice_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xlnd/src/lnd_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xocn/src/ocn_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xrof/src/rof_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xwav/src/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
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M src/externals/pio2/.github/workflows/strict_autotools.yml
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M src/externals/pio2/CMakeLists.txt
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M src/externals/pio2/cmake/LibMPI.cmake
M src/externals/pio2/cmake_config.h.in
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/runcdash-nwscla-gnu.sh
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/ctest/runcdash-nwscla-pgi.sh
M src/externals/pio2/examples/basic/gdecomp_mod.F90
M src/externals/pio2/examples/basic/testpio.F90
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M src/externals/pio2/examples/f03/Makefile.am
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M src/externals/pio2/src/clib/CMakeLists.txt
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D src/externals/pio2/src/clib/bget.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_meta.h.in
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/CMakeLists.txt
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M src/externals/pio2/src/flib/pio_kinds.F90
M src/externals/pio2/src/flib/pio_nf.F90
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M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
M src/externals/pio2/src/gptl/CMakeLists.txt
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/CMakeLists.txt
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/pio_tests.h
R089 src/externals/pio2/tests/cunit/run_tests.sh src/externals/pio2/tests/cunit/run_tests.sh.in
M src/externals/pio2/tests/cunit/test_common.c
M src/externals/pio2/tests/cunit/test_darray_append.c
M src/externals/pio2/tests/cunit/test_darray_frame.c
M src/externals/pio2/tests/cunit/test_iosystem3.c
M src/externals/pio2/tests/cunit/test_pioc.c
A src/externals/pio2/tests/cunit/test_simple.c
M src/externals/pio2/tests/fncint/Makefile.am
R090 src/externals/pio2/tests/fncint/run_tests.sh src/externals/pio2/tests/fncint/run_tests.sh.in
M src/externals/pio2/tests/general/Makefile.am
M src/externals/pio2/tests/general/ncdf_fail.F90.in
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
M src/externals/pio2/tests/general/ncdf_inq.F90.in
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_fillval.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_2d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_3d.F90.in
M src/externals/pio2/tests/general/pio_fail.F90.in
M src/externals/pio2/tests/general/pio_file_fail.F90.in
M src/externals/pio2/tests/general/pio_file_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_init_finalize.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests2.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests3.F90.in
M src/externals/pio2/tests/general/pio_rearr.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts2.F90.in
R094 src/externals/pio2/tests/general/run_tests.sh src/externals/pio2/tests/general/run_tests.sh.in
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/general/util/pio_tutil.F90
A src/externals/pio2/tests/ncint/CMakeLists.txt
M src/externals/pio2/tests/ncint/Makefile.am
R091 src/externals/pio2/tests/ncint/run_perf.sh src/externals/pio2/tests/ncint/run_perf.sh.in
R079 src/externals/pio2/tests/ncint/run_tests.sh src/externals/pio2/tests/ncint/run_tests.sh.in
M src/externals/pio2/tests/ncint/tst_ncint_async_perf.c
M src/externals/pio2/tests/ncint/tst_ncint_perf.c
A src/externals/pio2/tests/ncint/tst_var_compress.c
M src/externals/pio2/tests/performance/Makefile.am
M src/externals/pio2/tests/performance/pioperformance.F90
R090 src/externals/pio2/tests/performance/run_tests.sh src/externals/pio2/tests/performance/run_tests.sh.in
M src/externals/pio2/tests/unit/CMakeLists.txt
M src/externals/pio2/tests/unit/Makefile.am
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
A src/externals/pio2/tests/unit/ftst_vars_chunking.F90
M src/externals/pio2/tests/unit/global_vars.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
R081 src/externals/pio2/tests/unit/run_tests.sh src/externals/pio2/tests/unit/run_tests.sh.in
M src/share/timing/perf_mod.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-12-2020
Tag: cime5.8.34
Answer Changes: None
Tests: code-checker, ERP_Ln9.f09_f09_mg17.F2000climo.cheyenne_intel.cam-outfrq9s_mg3
github actions, scripts_regression_tests.py, P_TestJenkinsGenericJob
Dependencies:
Brief Summary:
- MPAS build fix for nag and pgi.
- Remove timing flags for e3sm build.
- New build wrapper for e3sm.
- More build updates for e3sm.
- Revert one e3sm-only line change for timing.
- Avoid building CDEPS with CTSM's LILAC.
- Add ability to add timings to all build operations for E3SM.
- Rename _separate_builds to _user_separate_builds.
- Support separate_builds for tests.
- Add an error check for separate builds.
- Merge branch 'master'.
- Merge branch 'master'.
- Fix merge issue.
- Remove the flags that fail the ERP test.
- Fix E3SM nightly TSC test failure.
- Revert "Use enhanced compiler flags for PUMAS/MG3 related F90 codes".
- Use enhanced compiler flags for PUMAS/MG3 related F90 codes.
- Create srt.yml.
- ESMF and pgi cheyenne update.
- Correctly attribute scorpio timers in cime_pre_init2.
- Fix test Y for nuopc driver.
- Add nuopc tests to cdash.
- Fix hang in TESTRUNDIFFRESUBMIT.
- Fix for pop ecosys rh files.
- Merge branch 'master'.
- Update ESMF on cheyenne.
- Change name ccsm cppdefs.
- Fixes Y_TestUserConcurrentMods by adding a more-robust waiting scheme.
- Add a no-submit option to jenkins_generic_job.
- In MEMLEAK checks, skip first day memory highwater while initializing.
- Some updates to E3SM test infrastructure.
- Add EAM case for 20TR CMIP6 docn component.
- Fix check_input_data to fail over to svn when a wget download fails.
- Change permissions on ref case rpointer files.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
726e53cf7 Merge pull request #3775 from ESMCI/fischer/MPAS_build
a64bdaef6 Merge pull request #3774 from ESMCI/jgfouca/remove_timing
f80d0d085 Merge pull request #3773 from ESMCI/jgfouca/e3sm_compile_wrap
e8bda07ed Merge pull request #3772 from ESMCI/jgfouca/more_build_updates
c23554bdd Revert one e3sm-only line change for timing
9d4b101a1 Merge pull request #3770 from billsacks/lilac_no_cdeps_v2
7855ee406 Merge pull request #3767 from ESMCI/jgfouca/e3sm_build_timings
12d98a4a5 Merge pull request #3764 from ESMCI/jgfouca/another_build_fix
5316eabdf Merge pull request #3761 from ESMCI/jgfouca/sep_builds_for_tests
c75b863a7 Merge pull request #3760 from ESMCI/jgfouca/add_error_check_sep_builds
798bea6b9 Merge branch 'master' of https://github.com/ESMCI/cime
775b67815 Merge branch 'master' of https://github.com/ESMCI/cime
0c0227c58 fix merge issue
3adf301d8 Merge pull request #3757 from sjsprecious/enhanced_compiler_flags
810e0e7a7 Merge pull request #3755 from ESMCI/mkstratos/fix_tsc_test
9df7abc1b Merge pull request #3753 from ESMCI/revert-3752-enhanced_compiler_flags
068b57aa4 Merge pull request #3752 from sjsprecious/enhanced_compiler_flags
d1fac4348 Merge pull request #3748 from ESMCI/add_github_action
10e20076d Merge pull request #3747 from ESMCI/esmf_and_pgi_cheyenne_update
7b9ba680a Merge pull request #3740 from ESMCI/worleyph/driver/fix-e3sm-issue-3886
f7dfa69db Merge pull request #3746 from jedwards4b/nuopc_Y_testfix
0d621adf8 add nuopc tests to cdash
c892b0fec Merge pull request #3744 from ESMCI/jgfouca/fix_test_rundiff_resubmit_hang
634b33d3b fix for pop ecosys rh files
01b0e9f7b Merge branch 'master' of https://github.com/ESMCI/cime
4021365b2 update esmf on cheyenne
fb2a56cf5 Merge pull request #3737 from ESMCI/wpcoomb_change_name_CCSM_cppdefs
dffe4b939 Merge pull request #3739 from ESMCI/jgfouca/fix_current_mods_test
af7c1e726 Merge pull request #3738 from ESMCI/jgfouca/jenkins_no_submit
c97d17e47 Merge pull request #3736 from ESMCI/azamat/memleak-tests/skip-first-mem-highwater
83a941283 Merge pull request #3734 from ESMCI/jgfouca/update_e3sm_test_infra
83ed19271 Merge pull request #3729 from ESMCI/rljacob/docn/add-eam
64bdbbbdb Merge pull request #3730 from lukaszlacinski/lukaszlacinski/check_input_data
82ac63dc7 Merge pull request #3726 from jedwards4b/rpointer_perms
Modified files: git diff --name-status [previous_tag]
A .github/workflows/srt.yml
D .travis.yml
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/machines/Depends.intel
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M scripts/Tools/Makefile
M scripts/Tools/case.build
A scripts/Tools/e3sm_compile_wrap.py
M scripts/Tools/jenkins_generic_job
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib_cmake.internal_components
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/drivers/mct/cime_config/buildlib_cmake
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-2-2020
Tag: cime5.8.33
Answer Changes: None
Tests: code-checker, ERP_Ln9.f09_f09_mg17.F2000climo.cheyenne_intel.cam-outfrq9s_mg3
github actions, scripts_regression_tests.py, P_TestJenkinsGenericJob
Dependencies:
Brief Summary:
- Support separate_builds for tests.
- Add an error check for separate builds.
- Merge branch 'master'.
- Merge branch 'master'.
- Fix merge issue.
- Remove the flags that fail the ERP test.
- Fix E3SM nightly TSC test failure.
- Revert "Use enhanced compiler flags for PUMAS/MG3 related F90 codes".
- Use enhanced compiler flags for PUMAS/MG3 related F90 codes.
- Create srt.yml.
- ESMF and pgi cheyenne update.
- Correctly attribute scorpio timers in cime_pre_init2.
- Fix test Y for nuopc driver.
- Add nuopc tests to cdash.
- Fix hang in TESTRUNDIFFRESUBMIT.
- Fix for pop ecosys rh files.
- Merge branch 'master'.
- Update ESMF on cheyenne.
- Change name ccsm cppdefs.
- Fixes Y_TestUserConcurrentMods by adding a more-robust waiting scheme.
- Add a no-submit option to jenkins_generic_job.
- In MEMLEAK checks, skip first day memory highwater while initializing.
- Some updates to E3SM test infrastructure.
- Add EAM case for 20TR CMIP6 docn component.
- Fix check_input_data to fail over to svn when a wget download fails.
- Change permissions on ref case rpointer files.
- Add support for MPAS grids.
- Allow for different atm names in chem_mech file generation.
- Change name of cam to eam in E3SM.
- Add mpi_init timer and ouput memory usage before CIME Run loop.
- Fix path to FMS in CESM.
- Support csh source cmd.
- Skip preview namelist.
- Downgrade Intel Compiler for UFS applications.
- Add JRA Repeat Year Forcing data modes.
- Change name of clm to elm in E3SM.
- Update cmeps paths.
- Fix mct build issue.
- Fix path the cmeps buildexe.
- Fix path to cdeps buildlib for cesm.
- Update impi version for ufs model.
- Change name of clm to elm in E3SM.
- Change NCPL's for G-case default and grids EC30 to 60E2r2 and WC14 to 60E2r3.
- Sets coupling frequencies for new MPAS-Ocean grid in E3SM.
- Include submodule status in provenance.
- Cime changes required by the topounit inplementation in E3SM.
- Update for UFS app.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5316eabdf Merge pull request #3761 from ESMCI/jgfouca/sep_builds_for_tests
c75b863a7 Merge pull request #3760 from ESMCI/jgfouca/add_error_check_sep_builds
798bea6b9 Merge branch 'master' of https://github.com/ESMCI/cime
775b67815 Merge branch 'master' of https://github.com/ESMCI/cime
0c0227c58 fix merge issue
3adf301d8 Merge pull request #3757 from sjsprecious/enhanced_compiler_flags
810e0e7a7 Merge pull request #3755 from ESMCI/mkstratos/fix_tsc_test
9df7abc1b Merge pull request #3753 from ESMCI/revert-3752-enhanced_compiler_flags
068b57aa4 Merge pull request #3752 from sjsprecious/enhanced_compiler_flags
d1fac4348 Merge pull request #3748 from ESMCI/add_github_action
10e20076d Merge pull request #3747 from ESMCI/esmf_and_pgi_cheyenne_update
7b9ba680a Merge pull request #3740 from ESMCI/worleyph/driver/fix-e3sm-issue-3886
f7dfa69db Merge pull request #3746 from jedwards4b/nuopc_Y_testfix
0d621adf8 add nuopc tests to cdash
c892b0fec Merge pull request #3744 from ESMCI/jgfouca/fix_test_rundiff_resubmit_hang
634b33d3b fix for pop ecosys rh files
01b0e9f7b Merge branch 'master' of https://github.com/ESMCI/cime
4021365b2 update esmf on cheyenne
fb2a56cf5 Merge pull request #3737 from ESMCI/wpcoomb_change_name_CCSM_cppdefs
dffe4b939 Merge pull request #3739 from ESMCI/jgfouca/fix_current_mods_test
af7c1e726 Merge pull request #3738 from ESMCI/jgfouca/jenkins_no_submit
c97d17e47 Merge pull request #3736 from ESMCI/azamat/memleak-tests/skip-first-mem-highwater
83a941283 Merge pull request #3734 from ESMCI/jgfouca/update_e3sm_test_infra
83ed19271 Merge pull request #3729 from ESMCI/rljacob/docn/add-eam
64bdbbbdb Merge pull request #3730 from lukaszlacinski/lukaszlacinski/check_input_data
82ac63dc7 Merge pull request #3726 from jedwards4b/rpointer_perms
14e85613b Merge pull request #3727 from ESMCI/fischer/mpas_bld_grds
7188df18b Merge pull request #3725 from jedwards4b/fix_atm_chem_mech
516f7c275 Merge pull request #3723 from ESMCI/rljacob/e3smconfig/eam-name
10004fe33 Merge pull request #3716 from ESMCI/worleyph/driver/init_profiling2
19b07d7ce fix path to FMS in CESM
19c9e54d0 Merge pull request #3718 from jedwards4b/support_csh_source_cmd
2e25aa97d Merge pull request #3719 from jedwards4b/skip_preview_namelist
098ac2ea7 Merge pull request #3721 from ESMCI/ufs_down_intel
24996612a Merge pull request #3691 from alperaltuntas/add_jra_ryf
2d0d0a9d1 Merge pull request #3714 from ESMCI/rljacob/e3smconfig/elm-name
329f400c1 update cmeps paths
91904cc35 fix mct build issue
f3aaa582f fix path to cmeps buildexe
99484d5f5 fix path to cdeps buildlib for cesm
f7791fbf3 update impi version for ufs model
4a3dccde4 Merge pull request #3703 from jedwards4b/s2sport
84df62862 Merge pull request #3701 from ESMCI/jonbob/add-new-ocnice-grids
e0dcc5902 Merge pull request #3694 from ESMCI/darincomeau/add_MPASO_grid_ECwISC30to60E1r2
07b7d3bc5 Merge pull request #3696 from ESMCI/wpcoomb/include_submodule_status_in_provenance
edbd2d08a Merge branch 'cime_for_topounits2' (PR #3695)
35fb2d7e9 Merge pull request #3697 from ESMCI/ufs_fix
Modified files: git diff --name-status [previous_tag]
A .github/workflows/srt.yml
D .travis.yml
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/Depends.intel
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/config_files.xml
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M scripts/Tools/Makefile
M scripts/Tools/case.build
M scripts/Tools/jenkins_generic_job
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib_cmake.internal_components
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/datm/src/datm_comp_mod.F90
M src/components/data_comps_mct/datm/src/datm_shr_mod.F90
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/data_comps_mct/drof/cime_config/config_component.xml
M src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
M src/drivers/mct/cime_config/buildlib_cmake
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-28-2020
Tag: cime5.8.32
Answer Changes: None
Tests: scripts_regression_tests, create_test_cime_developer,
SMS_D_Ld5_Vnuopc.f10_f10_musgs.I2000Clm50BgcCropGs.cheyenne_intel.clm-default,
SMS.f19_g17.X.cheyenne_intel, cdeps_aux tests and testlist_drv.xml test
Dependencies:
Brief Summary:
- Support concurrent env XML changes during case.run.
- Allow for a sh format file to be sourced and incorporated into the cime environment.
- Avoid artificial limit on string lengths in shr_string_listMerge.
- Don't try to set a variable from env_test.xml if it does not otherwise exist in the case.
- Fix logic in cdeps build.
- New cdeps stream schema and stream definition file.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5ab9bf4bd Merge pull request #3693 from ESMCI/jgfouca/volatile_env
bf51eb598 Merge pull request #3689 from jedwards4b/add_source_file_feature
6e6bf6b23 Merge pull request #3686 from billsacks/listmerge_relax_limit
e996ec4f5 Merge pull request #3688 from jedwards4b/pfs_test_fix
503d6c568 Merge pull request #3685 from jedwards4b/cdeps_bld_logic_fix
ae676698c Merge pull request #3680 from ESMCI/mvertens/new_stream_schema
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/nmlgen.py
M scripts/tests/scripts_regression_tests.py
M src/share/util/shr_string_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-20-2020
Tag: cime5.8.31
Answer Changes: None
Tests: scripts_regressio_tests
Dependencies:
Brief Summary:
- Fix FV3 grid problem and by default end the GSWP3 forcing in 2013.
- CMEPS driver env var.
- Add flexibility in dlnd domain_fracname.
- Fix K_TestCimeCase scripts regression tests on Mappy.
- Add cuda entries.
- Remove fox build from makefile.
- Revert PR #3658.
- shell_commands useds before env_test.xml is written.
- Revert dlnd source code to how it was prior to PR 3619.
- Add a warning if the user attempts to change a value set by env_test.xml.
- Skip over namelist vars ending with "input_data" in check_input_data.
- CIME changes to support upcoming addition of MALI gis1to10km configuration.
- Changes needed to have cdeps 3d stream input working.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d575f612e Merge pull request #3679 from ekluzek/fv3gridfix2013endGSWP3
cb20f8725 Merge pull request #3666 from jedwards4b/cmeps_driver_env_var
bea8a7fcd Merge pull request #3678 from billsacks/dlnd_frac_more_flexible
5408413b9 Merge pull request #3675 from ESMCI/wpcoomb/fix_K_TestCimeCase_scripts_regression_tests_on_Mappy
4ebf75a1d Merge pull request #3677 from ESMCI/mrnorman/add-cuda-entries-xml
e673f457b Merge pull request #3674 from jedwards4b/remove_fox
43036f386 Merge pull request #3676 from ESMCI/jgfouca/revert_input_chg
a27d3abef shell_commands useds before env_test.xml is written
ce6fc2ba1 Merge pull request #3671 from billsacks/fix_dlnd_for_sno
eeb1e3d2c Merge pull request #3670 from jedwards4b/add_env_test_warning
de05b6aa8 Merge pull request #3665 from fvitt/data_path
896bdf552 Merge pull request #3660 from ESMCI/jonbob/add-gis1to10km
3a86badd6 Merge pull request #3659 from ESMCI/mvertens/cdeps3d
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_machines.xml
M config/xml_schemas/config_compilers_v2.xsd
M scripts/Tools/Makefile
M scripts/Tools/xmlchange
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/test_scheduler.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/externals/mct/mpeu/m_inpak90.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-12-2020
Tag: cime5.8.30
Answer Changes: [None, Round Off, Climate Changing]
Tests: cprnc run_tests, scripts_regression_tests.py, ctsm aux_clm with nag
Dependencies:
Brief Summary:
- Fix single-variable integer output in cprnc.
- Changes required for noaa hafs app.
- Improve check_input_data.py to use os.path.isfile().
- Remove hard-wired nuopc mapping files except for required custom ones.
- Fix python 3 issue.
- Nag build fix.
- Remove the FoX library. It's now handled by CDEPS.
- Fix issue that the es3m config_files.xml points to several non-existent xml files.
- Reorder drof options.
- Update the pio2 external library.
- Add support to the data runoff model for E3SM Cryosphere.
- Fix G_TestBuildSystem test.
- Better logic when compset is tested in aux_ test.
- Another hotfix for e3sm.
- PET Test Baseline Generation and Comparison Improvement.
- Archive atm_chunk_costs with other performance data.
- Use SRCROOT instead of CIMEROOT in key places.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
899fcd90e Merge pull request #3663 from billsacks/cprnc_fix_int_singlevar
7e2655994 Merge pull request #3648 from jedwards4b/hafs_port
5176e710d Merge pull request #3658 from ESMCI/wpcoomb_check_input_data_improvements
1db9682bc Merge pull request #3652 from ESMCI/mvertens/remove_mapping_files
ef97cbed3 fix py3 issue
30c6b6af1 Merge pull request #3646 from jedwards4b/nag_build_fix
3298bb2a2 Merge pull request #3651 from jedwards4b/remove_fox
99867f17d Merge pull request #3650 from ESMCI/wpcoomb_query_config_components_improvements
923954285 Merge pull request #3644 from ESMCI/darincomeau/reorder_drof_options
5b34da18a Merge pull request #3643 from jedwards4b/pio2_update_0731
22e2a2f00 Merge pull request #3641 from ESMCI/darincomeau/add_JRA_e3sm_cryo_compsets
0d9ae78ca Merge pull request #3642 from ESMCI/jgfouca/fix_g_build_test
092e50f51 Merge pull request #3639 from mnlevy1981/update_supported_test
3eca1452a Another hotfix for e3sm
3a765464b Merge pull request #3635 from ESMCI/PET_test_baseline_generation_and_comparison_improvement
562a9a489 Merge pull request #3636 from ESMCI/singhbalwinder/pat-worley-provenance-changes
dd45995ff Merge pull request #3638 from ESMCI/jgfouca/fix_jenkins_commit
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_grids_nuopc.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/machines/config_machines.xml
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
D src/build_scripts/buildlib.fox
M src/components/data_comps_mct/drof/cime_config/config_component.xml
M src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
M src/components/xcpl_comps_nuopc/xatm/src/atm_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xglc/src/glc_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xice/src/ice_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xlnd/src/lnd_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xocn/src/ocn_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xrof/src/rof_comp_nuopc.F90
M src/components/xcpl_comps_nuopc/xshare/dead_nuopc_mod.F90
M src/components/xcpl_comps_nuopc/xwav/src/wav_comp_nuopc.F90
M src/externals/mct/mpeu/m_ioutil.F90
A src/externals/pio2/.github/workflows/autotools.yml
A src/externals/pio2/.github/workflows/cmake.yml
A src/externals/pio2/.github/workflows/strict_autotools.yml
M src/externals/pio2/.gitignore
M src/externals/pio2/.travis.yml
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/Makefile.am
M src/externals/pio2/configure.ac
M src/externals/pio2/examples/c/example2.c
A src/externals/pio2/libpio.settings.in
M src/externals/pio2/src/CMakeLists.txt
M src/externals/pio2/src/clib/CMakeLists.txt
M src/externals/pio2/src/clib/Makefile.am
A src/externals/pio2/src/clib/pio_error.c
M src/externals/pio2/src/clib/pio_error.h
A src/externals/pio2/src/clib/pio_meta.h.in
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfput_mod.F90.in
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/run_tests.sh
M src/externals/pio2/tests/cunit/test_common.c
A src/externals/pio2/tests/cunit/test_darray_append.c
M src/externals/pio2/tests/cunit/test_darray_multivar3.c
M src/externals/pio2/tests/general/CMakeLists.txt
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/control_int.nc
A tools/cprnc/test_inputs/int_missing.nc
M tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-24-2020
Tag: cime5.8.29
Answer Changes: MOM6
Tests: e3sm_land_developer, scripts_regression_tests, aux_cdeps
Dependencies:
Brief Summary:
- Minor fix to 'wget' mode of downloading CESM input data.
- stampede2 and cori machine updates.
- Modifications in MCT to support MOSART stratification.
- Add default ATM_NCPL=72 for ne45 (E3SM).
- Remove E3SM CIME subtree managent tools and libraries.
- Emergency hotfix for e3sm.
- CIME changes to support SCREAM.
- Update TL319 -> tx0.1v3 ATM2OCN map.
- Fix build clean for e3sm.
- Make hist_utils a bit more robust to existing cprnc.out files.
- Pet test system tests common fix.
- Branch for acme split 2020-07-16 merge.
- Gptl threaded.
- Reapply PR #3591
- Addition of new aux_cdeps tests to CDEPS.
- Make cprnc rpath system more robust.
- buildlib.cprnc make sure to call cprnc through wrapper.
- Branch for acme split 2020-07-07 merge.
- Refactor ensemble.py and single_run.py for python3.
- Dict has_key is removed in python3.
- Update TFREEZE_SALTWATER_OPTION value for MOM6.
- Set PIO_REARR_COMM_TYPE: coll for mpi-serial.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
8cda0e75b Merge pull request #3633 from ESMCI/bdobbins-wget-inputdata-bugfix
8ac220cfe Merge pull request #3634 from ESMCI/fischer/stampede2_cori_updates
9a4936785 Merge pull request #3627 from ESMCI/bishtgautam/mosart/stratification
7b238f284 Merge pull request #3628 from ESMCI/whannah/add_ne45_support
8e4329c1f Merge pull request #3632 from ESMCI/jgfouca/remove_e3sm_subtree_mgmt_code
a82674b68 Emergency hotfix for e3sm
e1ae39f25 Merge pull request #3626 from ESMCI/jgfouca/scream_cime
cf6c5c3df Merge pull request #3624 from mnlevy1981/update_highres_maps
df201d467 Merge pull request #3622 from ESMCI/jgfouca/fix_clean
0d2b31adf Merge pull request #3625 from ESMCI/jgfouca/fix_false_pass
893441098 Merge pull request #3620 from ESMCI/PET_test_system_tests_common_fix
283c01819 Merge pull request #3619 from ESMCI/jgfouca/branch-for-acme-split-2020-07-16
543c3e5cc Merge pull request #3600 from jedwards4b/gptl_threaded
f2a94676b Merge pull request #3618 from jedwards4b/force_smp_fix_again
1b973968e Merge pull request #3614 from ESMCI/mvertens/inline_updates
30470cec1 Merge pull request #3616 from ESMCI/jgfouca/further_cprnc_build_improvements
8340214b2 Merge pull request #3611 from ESMCI/jgfouca/fix_cprnc_build
ca7d0bb34 Merge pull request #3610 from ESMCI/jgfouca/branch-for-acme-split-2020-07-07
3a5df36cf Merge pull request #3609 from johnsonb-ucar/master
23c3f42d9 Merge pull request #3605 from billsacks/no_has_key
97cd72c38 Merge pull request #3603 from alperaltuntas/change_tfreeze_saltwater_option
366ec5c65 Merge pull request #3597 from jedwards4b/redo_mpi_serial_pio_comm_type
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
D config/e3sm/allactive/config_compsets.xml
D config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/testlist_allactive.xml
D config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
D config/e3sm/config_grids.xml
D config/e3sm/config_inputdata.xml
D config/e3sm/machines/Depends.cray
D config/e3sm/machines/Depends.cray.cmake
D config/e3sm/machines/Depends.gnu
D config/e3sm/machines/Depends.gnu.cmake
D config/e3sm/machines/Depends.ibm
D config/e3sm/machines/Depends.ibm.cmake
D config/e3sm/machines/Depends.intel
D config/e3sm/machines/Depends.intel.cmake
D config/e3sm/machines/Depends.nag
D config/e3sm/machines/Depends.nag.cmake
D config/e3sm/machines/Depends.summit.cmake
D config/e3sm/machines/Depends.summit.pgiacc
D config/e3sm/machines/Depends.summit.pgiacc.cmake
D config/e3sm/machines/Depends.summit.pgigpu
D config/e3sm/machines/Depends.summit.pgigpu.cmake
D config/e3sm/machines/Depends.summitdev.pgiacc
D config/e3sm/machines/Depends.summitdev.pgiacc.cmake
D config/e3sm/machines/README
D config/e3sm/machines/config_batch.xml
D config/e3sm/machines/config_compilers.xml
D config/e3sm/machines/config_machines.xml
D config/e3sm/machines/config_pio.xml
D config/e3sm/machines/config_workflow.xml
D config/e3sm/machines/syslog.anvil
D config/e3sm/machines/syslog.compy
D config/e3sm/machines/syslog.cori-haswell
D config/e3sm/machines/syslog.cori-knl
D config/e3sm/machines/syslog.noop
D config/e3sm/machines/syslog.summit
D config/e3sm/machines/syslog.theta
D config/e3sm/machines/syslog.titan
D config/e3sm/machines/template.case.run
D config/e3sm/machines/template.case.run.sh
D config/e3sm/machines/template.case.test
D config/e3sm/machines/template.ocn_diagnostics
D config/e3sm/machines/template.st_archive
D config/e3sm/machines/template.timeseries
D config/e3sm/machines/userdefined_laptop_template/README.md
D config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
D config/e3sm/machines/userdefined_laptop_template/config_machines.xml
D config/e3sm/machines/userdefined_laptop_template/config_pes.xml
D config/e3sm/testmods_dirs/allactive/force_netcdf_pio/shell_commands
D config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
D config/e3sm/testmods_dirs/allactive/mach_mods/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/shell_commands
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_clm
D config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_mpaso
D config/e3sm/testmods_dirs/allactive/v1cmip6/README
D config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
D config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
D config/e3sm/testmods_dirs/bench/gmpas_noio/shell_commands
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/hires/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpaso
D config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpassi
D config/e3sm/testmods_dirs/bench/wcycl/lores/shell_commands
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_cam
D config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_clm
D config/e3sm/tests.py
D config/e3sm/usermods_dirs/README
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/testlist.xsd
M scripts/Tools/Makefile
D scripts/Tools/e3sm_cime_merge
D scripts/Tools/e3sm_cime_split
M scripts/Tools/jenkins_generic_job
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
D scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_mct/docn/cime_config/config_component.xml
M src/components/data_comps_mct/docn/src/docn_comp_mod.F90
M src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/externals/mct/configure
M src/externals/mct/mpi-serial/configure
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/timing/Makefile
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_scam_mod.F90
M tools/cprnc/CMakeLists.txt
M tools/statistical_ensemble_test/ensemble.py
M tools/statistical_ensemble_test/single_run.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-30-2020
Tag: cime5.8.28
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Update some domain and mapping files.
- Improve error message for create newcase test option.
- Clean up screen output & logging in check_input_data.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a2de0598c Merge pull request #3602 from ESMCI/fischer/mapping_file_update
01c50ea71 Merge pull request #3599 from ESMCI/wpcoomb/improve_error_message_for_create_newcase_test_option
87ab750cd Merge pull request #3589 from billsacks/check_input_data_logging
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M scripts/create_newcase
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-23-2020
Tag: cime5.8.27
Answer Changes: [None, Round Off, Climate Changing]
Tests: SMS.ne30pg3_ne30pg3_mg17.A.cheyenne_intel
scripts_resgression_tests
SMS_D_Ld3.f45_g37_rx1.A.izumi_nag
Dependencies:
Brief Summary:
- Rename ne30pg3 grid name to ne30np4.pg3
- ERA5 data stream related changes.
- Fix link order for cdeps.
- Give the file name that results in the "empty read-only file" error.
- Uncomment error check.
- Use pio1 even for mpi-serial cases in CESM.
- Fix print format issue and turn off debug flags.
- Update paths for cdeps.
- Merge branch 'master' of https://github.com/ESMCI/cime.
- Minor adjust to cdeps link step.
- Add cmake to cheyenne modules, point to CDEPS buildlib.
- Updates for cdeps streams
- Remove nuopc data models to new repo CDEPS.
- Fixed and cleaned-up scripts_regression_tests.py test Q_TestBlessTestResults with CIME_MODEL = cesm.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b3fb69d87 Merge pull request #3587 from ESMCI/fischer/rename_ne30pg3_grid
d1058c937 Merge pull request #3586 from ESMCI/add_era5_cime_only
231c70059 fix link order for cdeps
bdef181e4 Merge pull request #3585 from billsacks/improve_error_message
4427dd051 uncomment error check
86509cc45 Merge pull request #3583 from billsacks/use_pio1
4412c39b2 Merge pull request #3582 from jedwards4b/nag_fixes
8a4859e5a update paths for cdeps
40b2eb7b3 Merge branch 'master' of https://github.com/ESMCI/cime
87951ae07 minor adjust to CDEPS link step
a740bedfd add cmake to cheyenne modules, point to CDEPS buildlib
d10f946d6 updates for cdeps streams
74e537532 Merge pull request #3578 from jedwards4b/remove_nuopc_data_models
9052cc17f Merge pull request #3579 from ESMCI/wpcoomb/fix_scripts_regression_tests.py_test_Q_TestBlessTestResults
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/machines/config_machines.xml
M config/xml_schemas/entry_id_base.xsd
M config/xml_schemas/entry_id_base_version3.xsd
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/nmlgen.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.internal_components
D src/components/data_comps_nuopc/datm/cime_config/buildlib
D src/components/data_comps_nuopc/datm/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/datm/cime_config/buildnml
D src/components/data_comps_nuopc/datm/cime_config/config_archive.xml
D src/components/data_comps_nuopc/datm/cime_config/config_component.xml
D src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
D src/components/data_comps_nuopc/datm/cime_config/user_nl_datm
D src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
D src/components/data_comps_nuopc/datm/src/datm_datamode_clmncep_mod.F90
D src/components/data_comps_nuopc/datm/src/datm_datamode_core2_mod.F90
D src/components/data_comps_nuopc/datm/src/datm_datamode_jra_mod.F90
D src/components/data_comps_nuopc/dice/cime_config/buildlib
D src/components/data_comps_nuopc/dice/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/dice/cime_config/buildnml
D src/components/data_comps_nuopc/dice/cime_config/config_archive.xml
D src/components/data_comps_nuopc/dice/cime_config/config_component.xml
D src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps_nuopc/dice/cime_config/user_nl_dice
D src/components/data_comps_nuopc/dice/src/dice_datamode_ssmi_mod.F90
D src/components/data_comps_nuopc/dice/src/dice_flux_atmice_mod.F90
D src/components/data_comps_nuopc/dice/src/ice_comp_nuopc.F90
D src/components/data_comps_nuopc/dlnd/cime_config/buildlib
D src/components/data_comps_nuopc/dlnd/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/dlnd/cime_config/buildnml
D src/components/data_comps_nuopc/dlnd/cime_config/config_archive.xml
D src/components/data_comps_nuopc/dlnd/cime_config/config_component.xml
D src/components/data_comps_nuopc/dlnd/cime_config/namelist_definition_dlnd.xml
D src/components/data_comps_nuopc/dlnd/cime_config/user_nl_dlnd
D src/components/data_comps_nuopc/dlnd/src/lnd_comp_nuopc.F90
D src/components/data_comps_nuopc/docn/cime_config/buildlib
D src/components/data_comps_nuopc/docn/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/docn/cime_config/buildnml
D src/components/data_comps_nuopc/docn/cime_config/config_archive.xml
D src/components/data_comps_nuopc/docn/cime_config/config_component.xml
D src/components/data_comps_nuopc/docn/cime_config/namelist_definition_docn.xml
D src/components/data_comps_nuopc/docn/cime_config/user_nl_docn
D src/components/data_comps_nuopc/docn/src/docn_datamode_aquaplanet_mod.F90
D src/components/data_comps_nuopc/docn/src/docn_datamode_copyall_mod.F90
D src/components/data_comps_nuopc/docn/src/docn_datamode_iaf_mod.F90
D src/components/data_comps_nuopc/docn/src/docn_datamode_som_mod.F90
D src/components/data_comps_nuopc/docn/src/docn_set_ofrac_mod.F90
D src/components/data_comps_nuopc/docn/src/ocn_comp_nuopc.F90
D src/components/data_comps_nuopc/drof/cime_config/buildlib
D src/components/data_comps_nuopc/drof/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/drof/cime_config/buildnml
D src/components/data_comps_nuopc/drof/cime_config/config_archive.xml
D src/components/data_comps_nuopc/drof/cime_config/config_component.xml
D src/components/data_comps_nuopc/drof/cime_config/namelist_definition_drof.xml
D src/components/data_comps_nuopc/drof/cime_config/user_nl_drof
D src/components/data_comps_nuopc/drof/src/rof_comp_nuopc.F90
D src/components/data_comps_nuopc/dshr_nuopc/dshr_dfield_mod.F90
D src/components/data_comps_nuopc/dshr_nuopc/dshr_fldlist_mod.F90
D src/components/data_comps_nuopc/dshr_nuopc/dshr_mod.F90
D src/components/data_comps_nuopc/dwav/cime_config/buildlib
D src/components/data_comps_nuopc/dwav/cime_config/buildlib_cmake
D src/components/data_comps_nuopc/dwav/cime_config/buildnml
D src/components/data_comps_nuopc/dwav/cime_config/config_archive.xml
D src/components/data_comps_nuopc/dwav/cime_config/config_component.xml
D src/components/data_comps_nuopc/dwav/cime_config/namelist_definition_dwav.xml
D src/components/data_comps_nuopc/dwav/cime_config/user_nl_dwav
D src/components/data_comps_nuopc/dwav/src/wav_comp_nuopc.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/streams/shr_stream_mod.F90
D src/share/streams_nuopc/dshr_methods_mod.F90
D src/share/streams_nuopc/dshr_strdata_mod.F90
D src/share/streams_nuopc/dshr_stream_mod.F90
D src/share/streams_nuopc/dshr_tInterp_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-16-2020
Tag: cime5.8.26
Answer Changes: Climate Changin]
Tests: hand tested with ERS_Vnuopc_D.f09_g17.A.cheyenne_intel modified for era5
../src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml (cheyenne, intel)
scripts_regression_tests (with PIO_VERSION=2)
Dependencies:
Brief Summary:
- One line bug fix for regional amazon grid and nuopc rpointer name.
- scorpio (e3sm pio2 version) does not support the PIO_SHORT type added to the pio2 library.
- Add mvsource script.
- Add support for compressed ERA5 data streams.
- Major refactor of nuopc datamodel caps and share code.
- Changes to add NCAR's Casper/DAV systems to the machine lists.
- Updates to dry deposition data.
- Updates to the latest pio2 code.
- Allow a user supplied config_grids.xml file.
- Pleiades machines updates.
- Improved error message for incorrect setting of cime model.
User interface changes:
- For all CIME data models.
PR summary: git log --oneline --first-parent [previous_tag]..master
c09bafe53 minor one line bug fixes for regional amazon grid and nuopc rpointer name
cd1238247 Merge pull request #3575 from jedwards4b/fix_scorpio_bld
50c768dec Merge pull request #3543 from jedwards4b/movesrc
9e31c070f Merge pull request #3573 from jedwards4b/add_era5_support_nuopc_data_models
dab733cba Merge pull request #3572 from ESMCI/esmf_datamodels
bb4932212 Merge pull request #3548 from gdicker1/add_DAV
72a32ce65 Merge pull request #3557 from fvitt/drydep_cime5.8.23
0c7d278c1 Merge pull request #3568 from jedwards4b/pio2_update
e2dbd62e6 Merge pull request #3565 from jedwards4b/user_mods_config_grids2
84391ac37 Merge pull request #3546 from fvitt/pleiades_cime5.8.23
31a009936 Merge pull request #3567 from ESMCI/wpcoomb/Improved_error_message_for_incorrect_setting_of_CIME_MODEL
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
A scripts/Tools/mvsource
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/utils.py
A src/build_scripts/buildlib.fox
M src/build_scripts/buildlib.pio
M src/components/data_comps_mct/datm/cime_config/buildnml
M src/components/data_comps_nuopc/datm/cime_config/buildnml
M src/components/data_comps_nuopc/datm/cime_config/config_component.xml
M src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
A src/components/data_comps_nuopc/datm/src/datm_datamode_clmncep_mod.F90
A src/components/data_comps_nuopc/datm/src/datm_datamode_core2_mod.F90
A src/components/data_comps_nuopc/datm/src/datm_datamode_jra_mod.F90
M src/components/data_comps_nuopc/dice/cime_config/buildnml
M src/components/data_comps_nuopc/dice/cime_config/config_component.xml
M src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
A src/components/data_comps_nuopc/dice/src/dice_datamode_ssmi_mod.F90
M src/components/data_comps_nuopc/dice/src/ice_comp_nuopc.F90
M src/components/data_comps_nuopc/dlnd/cime_config/buildnml
M src/components/data_comps_nuopc/dlnd/cime_config/config_component.xml
M src/components/data_comps_nuopc/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_nuopc/dlnd/src/lnd_comp_nuopc.F90
M src/components/data_comps_nuopc/docn/cime_config/buildnml
M src/components/data_comps_nuopc/docn/cime_config/config_component.xml
M src/components/data_comps_nuopc/docn/cime_config/namelist_definition_docn.xml
A src/components/data_comps_nuopc/docn/src/docn_datamode_aquaplanet_mod.F90
A src/components/data_comps_nuopc/docn/src/docn_datamode_copyall_mod.F90
A src/components/data_comps_nuopc/docn/src/docn_datamode_iaf_mod.F90
A src/components/data_comps_nuopc/docn/src/docn_datamode_som_mod.F90
A src/components/data_comps_nuopc/docn/src/docn_set_ofrac_mod.F90
M src/components/data_comps_nuopc/docn/src/ocn_comp_nuopc.F90
M src/components/data_comps_nuopc/drof/cime_config/buildnml
M src/components/data_comps_nuopc/drof/cime_config/config_component.xml
M src/components/data_comps_nuopc/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps_nuopc/drof/src/rof_comp_nuopc.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_dfield_mod.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_fldlist_mod.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_mod.F90
M src/components/data_comps_nuopc/dwav/cime_config/buildnml
M src/components/data_comps_nuopc/dwav/cime_config/config_component.xml
M src/components/data_comps_nuopc/dwav/cime_config/namelist_definition_dwav.xml
M src/components/data_comps_nuopc/dwav/src/wav_comp_nuopc.F90
M src/drivers/mct/shr/seq_drydep_mod.F90
M src/externals/pio2/scripts/genf90.pl
M src/externals/pio2/set_flags.am
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_kinds.F90
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_pioc.c
M src/externals/pio2/tests/cunit/test_pioc_fill.c
M src/externals/pio2/tests/cunit/test_pioc_putget.c
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/general/util/pio_tutil.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/streams/shr_stream_mod.F90
M src/share/streams_nuopc/dshr_methods_mod.F90
M src/share/streams_nuopc/dshr_strdata_mod.F90
M src/share/streams_nuopc/dshr_stream_mod.F90
M src/share/streams_nuopc/dshr_tInterp_mod.F90
M src/share/util/shr_cal_mod.F90
M src/share/util/shr_kind_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-8-2020
Tag: cime5.8.25
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Change grid alias for artic var-res grids.
- Couples HYCOM with data atmosphere for UFS HAFS application.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
e8dfe9356 Merge pull request #3566 from ESMCI/fischer/var_res_grids
3d03e31f2 Merge pull request #3556 from ESMCI/ufs-hafs-app_updated_v2
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/case/case.py
M src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-3-2020
Tag: cime5.8.24
Answer Changes: Round Off on izumi
Tests: scripts_regression_tests, izumi tests
Dependencies:
Brief Summary:
- Machine configuration updates for izumi.
- Add Makefile target to write various flags.
- Improve PET test baseline generation and comparison.
- Allow gptl build to recognize ESMF_LIBDIR.
- When writing .env_mach_specific files, only write settings for main job.
- Start adding option for MizuRoute.
- Merge ACME branch 2020-05-15.
- Allow compiler to modify MAX_TASKS_PER_NODE and MAX_MPITASKS_PER_NODE.
- Improve cime buildlib function debug logging.
- Fix cime_model to stdout issue.
- Extend allowed string length.
- Fix div0s in cprnc comparisons.
- Change type to double for derived vars in cprnc.
- Fix typo.
User interface changes:
- New component added for cesm.
PR summary: git log --oneline --first-parent [previous_tag]..master
837ffbf25 Merge pull request #3560 from ESMCI/fischer/izumi_update
99a0b1f96 Merge pull request #3558 from billsacks/makefile_rule_write_link_flags
cacf02562 Merge pull request #3434 from ESMCI/wpcoomb/improve_PETtest_baseline_generation_and_comparison
2547d0d11 Merge pull request #3551 from billsacks/gptl_esmflibdir
27021a67d Merge pull request #3555 from billsacks/env_mach_specific_main_job
1b049969f Merge pull request #3529 from ekluzek/mizuRoute
b847e9fb1 Merge pull request #3538 from ESMCI/jgfouca/branch-for-acme-split-2020-05-15
64e9f9202 Merge pull request #3545 from jedwards4b/modify_max_with_compiler
588039c8e Merge pull request #3539 from ESMCI/wpcoomb/improve_cime_buildlib_function
50a0edc49 Merge pull request #3536 from jedwards4b/cime_model_fix
29508e9d6 Merge pull request #3535 from jedwards4b/cprnc_improvement
9b650d311 Merge pull request #3530 from rgknox/fix-div0-compare_vars
f914cb653 Merge pull request #3531 from jedwards4b/cprnc_improvement
34c9b8f19 Merge pull request #3524 from christophergeiger3/patch-1
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/Depends.summit.cmake
A config/e3sm/machines/Depends.summit.pgigpu
A config/e3sm/machines/Depends.summit.pgigpu.cmake
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/machines/template.case.run.sh
A config/e3sm/testmods_dirs/allactive/v1bgc/shell_commands
A config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1bgc/user_nl_mpaso
A config/e3sm/testmods_dirs/allactive/v1bgc_1850/shell_commands
A config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1bgc_1850/user_nl_mpaso
A config/e3sm/testmods_dirs/allactive/v1bgceca/shell_commands
A config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1bgceca/user_nl_mpaso
A config/e3sm/testmods_dirs/allactive/v1bgceca_1850/shell_commands
A config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1bgceca_1850/user_nl_mpaso
M config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M doc/source/what_cime/index.rst
M scripts/Tools/Makefile
M scripts/Tools/cime_bisect
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/makemacroswriter.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.internal_components
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/share/timing/Makefile
M src/share/util/shr_mem_mod.F90
M tools/cprnc/Makefile
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/filestruct.F90
D tools/cprnc/test.csh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-19-2020
Tag: cime5.8.23
Answer Changes: roundoff for some compsets, bfb for others
Tests: scripts_regressions_tests
Dependencies:
Brief Summary:
- Improvement to scripts regression tests on the Melvin machine.
- Fix atm level spec so that it does not match 1x1_brazil.
- Document provenance from COARE/Fairall surface flux scheme option.
- Add missing ROF2OCN grid for r05_TO_gx3v7.
- Updates to CIME used for 0.1 degree JRA-forced G run with BGC enabled.
- FV3 bug fix and Makefile update.
- Update cheyenne ESMF libs.
- case.setup: fix merge error from prev PR.
- case.setup: fix case.setup --clean.
- First steps to ESMF data models.
- Allow user to specify an extra machines directory in create_newcase.
- Remove code specific to ORNL machine.
User interface changes:
- Adds --extra-machines-dir argument to create_newcase.
PR summary: git log --oneline --first-parent [previous_tag]..master
332d8c9b3 Merge pull request #3522 from ESMCI/wpcoomb/melvin_regression_tests_improvements
6d745aa6b Merge pull request #3519 from jedwards4b/atm_level_fix
850bef781 Merge pull request #3520 from mt5555/patch-1
ebb9dd6c9 Merge pull request #3517 from ESMCI/fischer/r05_gx3v7
5805a40a5 Merge pull request #3515 from mnlevy1981/highres_JRA_BGC
1bc586676 Merge pull request #3516 from jtruesdal/fv3_3452
6a00e248c Merge pull request #3514 from ESMCI/fischer/esmf_libs
793764fd2 Merge pull request #3513 from ESMCI/jgfouca/fix_case_setup
25840072d Merge pull request #3511 from ESMCI/jgfouca/fix_case_clean
509f2bfa8 Merge pull request #3505 from ESMCI/mvertens/dmodels_refactor_to_esmfpre
51ac93be5 Merge pull request #3508 from billsacks/alternate_dot_cime_location
7303682ed Merge pull request #3502 from jedwards4b/remove_titan_piocode
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_machines_template.xml
M scripts/Tools/Makefile
M scripts/create_newcase
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps_nuopc/datm/cime_config/buildnml
M src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
D src/components/data_comps_nuopc/datm/src/datm_comp_mod.F90
M src/components/data_comps_nuopc/dice/cime_config/buildnml
M src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
M src/components/data_comps_nuopc/dice/src/ice_comp_nuopc.F90
M src/components/data_comps_nuopc/dlnd/cime_config/buildnml
M src/components/data_comps_nuopc/dlnd/cime_config/namelist_definition_dlnd.xml
D src/components/data_comps_nuopc/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_nuopc/dlnd/src/lnd_comp_nuopc.F90
M src/components/data_comps_nuopc/docn/cime_config/buildnml
M src/components/data_comps_nuopc/docn/cime_config/namelist_definition_docn.xml
D src/components/data_comps_nuopc/docn/src/docn_comp_mod.F90
M src/components/data_comps_nuopc/docn/src/ocn_comp_nuopc.F90
M src/components/data_comps_nuopc/drof/cime_config/buildnml
M src/components/data_comps_nuopc/drof/cime_config/namelist_definition_drof.xml
D src/components/data_comps_nuopc/drof/src/drof_comp_mod.F90
M src/components/data_comps_nuopc/drof/src/rof_comp_nuopc.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_dfield_mod.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_fldlist_mod.F90
R063 src/components/data_comps_nuopc/dshr_nuopc/dshr_nuopc_mod.F90 src/components/data_comps_nuopc/dshr_nuopc/dshr_mod.F90
M src/components/data_comps_nuopc/dwav/cime_config/buildnml
M src/components/data_comps_nuopc/dwav/cime_config/namelist_definition_dwav.xml
D src/components/data_comps_nuopc/dwav/src/dwav_comp_mod.F90
M src/components/data_comps_nuopc/dwav/src/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/share/streams/shr_stream_mod.F90
R058 src/components/data_comps_nuopc/dshr_nuopc/dshr_methods_mod.F90 src/share/streams_nuopc/dshr_methods_mod.F90
A src/share/streams_nuopc/dshr_strdata_mod.F90
A src/share/streams_nuopc/dshr_stream_mod.F90
A src/share/streams_nuopc/dshr_tInterp_mod.F90
M src/share/util/shr_flux_mod.F90
M utils/perl5lib/Config/SetupTools.pm
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-26-2020
Tag: cime5.8.22
Answer Changes: b4b
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix issue with mpi-serial io.
- Use esmf8.1.0b14 on cheyenne.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
3b4ea8a99 Merge pull request #3499 from jedwards4b/pio_serialio_fix
eb2e04e52 Merge pull request #3494 from jedwards4b/update_cheyenne_esmf
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M scripts/Tools/Makefile
M src/externals/pio2/src/flib/piolib_mod.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-17-2020
Tag: cime5.8.21
Answer Changes: None
Tests: scripts_regression_tests
CIME_MODEL=cesm; CIME_DRIVER=nuopc; ./scripts_regression_tests.py
Dependencies:
Brief Summary:
- Use shrmap by reference instead of copy.
- nuopc_updates for scripts_regression_tests, esmf on cheyenne
- e3sm_cime_mgmt hotfix for both-removed conflicts
- Allow for specification of vertical grid in ATM_GRID.
- Recognize when a machine listed in config_machines.xml has no entries.
- Fix case reset on some machines.
- Fix pylint issues.
- Bring back the setting of dlnd strm_domdir and strm_domfil to null.
- Bugfixes and changes that permit cmeps to run without a mediator.
- Some changes to cprnc's CMakeLists.txt.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
979ab8433 Merge pull request #3470 from jedwards4b/shr_map_getARptr
4525d6a4e Merge pull request #3490 from jedwards4b/nuopc_updates
3c9fa143f e3sm_cime_mgmt hotfix for both-removed conflicts
22aab810e Merge pull request #3492 from jedwards4b/atm_vert_grid_fix
37a74cf5b Merge pull request #3468 from ESMCI/wpcoomb/user_defined_env_variables
79a8e11e6 Merge pull request #3475 from ESMCI/jgfouca/fix_case_reset
abbf05745 fix pylint issue
7bbbc40fa Merge pull request #3486 from billsacks/fix_dlnd_streams
15893bcaf Merge pull request #3484 from ESMCI/mvertens/nuopc_bugfixes
4bc65d82b Merge pull request #3483 from ESMCI/jgfouca/cprnc_improve_cmake
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids_nuopc.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M scripts/Tools/Makefile
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
M src/components/data_comps_nuopc/docn/src/docn_comp_mod.F90
M src/components/data_comps_nuopc/drof/src/drof_comp_mod.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/share/nuopc/seq_drydep_mod.F90
M src/share/nuopc/shr_fire_emis_mod.F90
M src/share/nuopc/shr_megan_mod.F90
M src/share/nuopc/shr_ndep_mod.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/timing/perf_mod.F90
M src/share/util/shr_map_mod.F90
M src/share/util/shr_sys_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-7-2020
Tag: cime5.8.20
Answer Changes: None
Tests: scripts_regression_tests, check_inputdata
Dependencies:
Brief Summary:
- Add ftp timeout, fix failover to svn.
- E3SM 03-16-2020 merger.
- Remove unneeded encodes.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
708a9338b Merge pull request #3479 from jedwards4b/ftp_timeout
263de7e86 Merge pull request #3457 from ESMCI/jgfouca/branch-for-acme-split-2020-03-16
611ca9c1e wget: hotfix, remove unneeded encodes
Modified files: git diff --name-status [previous_tag]
M config/config_tests.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/Depends.gnu.cmake
M config/e3sm/machines/Depends.ibm.cmake
M config/e3sm/machines/Depends.intel.cmake
M config/e3sm/machines/Depends.summit.pgiacc.cmake
M config/e3sm/machines/Depends.summitdev.pgiacc.cmake
D config/e3sm/machines/Depends.theta.intel
D config/e3sm/machines/Depends.theta.intel.cmake
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
A config/e3sm/testmods_dirs/bench/gmpas_noio/shell_commands
A config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpaso
A config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpassi
A config/e3sm/testmods_dirs/bench/wcycl/hires/shell_commands
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_cam
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpaso
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpassi
A config/e3sm/testmods_dirs/bench/wcycl/lores/shell_commands
A config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_cam
A config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_clm
M config/e3sm/tests.py
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_grids_v2.1.xsd
M config/xml_schemas/config_grids_v2.xsd
M scripts/Tools/bld_diff
M scripts/Tools/case.build
A scripts/Tools/get_case_env
M scripts/Tools/get_standard_makefile_args
M scripts/create_newcase
M scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/homme.py
A scripts/lib/CIME/SystemTests/hommebaseclass.py
A scripts/lib/CIME/SystemTests/hommebfb.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
A src/CMake/CorrectWindowsPaths.cmake
A src/CMake/FindPackageMultipass.cmake
A src/CMake/ResolveCompilerPaths.cmake
M src/build_scripts/buildlib.cprnc
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
A src/build_scripts/buildlib_cmake.internal_components
A src/components/data_comps_mct/datm/cime_config/buildlib_cmake
A src/components/data_comps_mct/desp/cime_config/buildlib_cmake
A src/components/data_comps_mct/dice/cime_config/buildlib_cmake
A src/components/data_comps_mct/dlnd/cime_config/buildlib_cmake
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
A src/components/data_comps_mct/docn/cime_config/buildlib_cmake
M src/components/data_comps_mct/docn/cime_config/config_component.xml
A src/components/data_comps_mct/drof/cime_config/buildlib_cmake
A src/components/data_comps_mct/dwav/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/datm/cime_config/buildlib_cmake
M src/components/data_comps_nuopc/datm/cime_config/config_component.xml
M src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
A src/components/data_comps_nuopc/dice/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/dlnd/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/docn/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/drof/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/dwav/cime_config/buildlib_cmake
A src/components/stub_comps_mct/satm/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sesp/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sglc/cime_config/buildlib_cmake
A src/components/stub_comps_mct/siac/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sice/cime_config/buildlib_cmake
A src/components/stub_comps_mct/slnd/cime_config/buildlib_cmake
A src/components/stub_comps_mct/socn/cime_config/buildlib_cmake
A src/components/stub_comps_mct/srof/cime_config/buildlib_cmake
A src/components/stub_comps_mct/swav/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/satm/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sesp/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sglc/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/siac/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sice/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/slnd/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/socn/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/srof/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/swav/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xatm/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xglc/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xice/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xlnd/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xocn/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xrof/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xwav/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xatm/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xglc/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xice/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xlnd/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xocn/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xrof/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xwav/cime_config/buildlib_cmake
A src/drivers/mct/cime_config/buildlib_cmake
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/timing/GPTLget_memusage.c
M src/share/timing/GPTLprint_memusage.c
M src/share/timing/gptl.c
M src/share/util/shr_mem_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_sys_mod.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
A tools/mapping/gen_domain_files/test_gen_domain.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-3-2020
Tag: cime5.8.19
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Clean up follow maint5.6 merge.
- Change sst_aquap11 to sst_aquap_constant
- case.setup: Add --keep option
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2656300d5 Merge pull request #3462 from mnlevy1981/cleanup_maint-5.6_merge
06760c7c2 Merge pull request #3469 from ESMCI/fischer/sst_aquap_constant
bb2d15680 Merge pull request #3464 from ESMCI/jgfouca/case_setup_keep_list
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids_common.xml
M scripts/Tools/case.setup
M scripts/lib/CIME/case/case_setup.py
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/datm/src/datm_comp_mod.F90
M src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-20-2020
Tag: cime5.8.18
Answer Changes: None
Tests: scripts_regression_tests, SMS.ne5pg4_ne5pg4_mg37.A
Dependencies:
Brief Summary:
- Add ne5np4.pg4 grid.
- Ensure that api documentation is rebuilt whenever rebuilding
documentation.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
f990945a7 Merge pull request #3460 from ESMCI/fischer/ne5np4
f25ecc408 Merge pull request #3454 from billsacks/doc_clean_api
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M doc/Makefile
======================================================================
======================================================================
Originator: Bill Sacks
Date: 3-15-2020
Tag: cime5.8.17
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Separate mct and nuopc data, xcpl and stub components
- Update pio2
- Documentation: provide a version dropdown menu and change theme
- Add ne5pg2_ne5pg2_mg37 grid
- Fix some issues
User interface changes: None
PR summary: git log --oneline --first-parent [previous_tag]..master
4f1880756 Merge pull request #3439 from billsacks/versioned_docs3
38c2b9f3c Merge pull request #3441 from jedwards4b/thunder_port
5d9ff806a Merge pull request #3451 from jedwards4b/check_inputdata_fix
3444503c2 Merge pull request #3449 from ESMCI/jgfouca/improve_case_setup_clean
02a8eebaa fix default for PIO_REARRANGER
49e82c611 Merge pull request #3447 from jedwards4b/pio2_update
ada1f0901 Merge pull request #3445 from ESMCI/fischer/ne5pg2
bbba1afdb Merge pull request #3444 from alperaltuntas/datm_mesh_tol
acc2d239c Merge commit 'e5265f03a6a8e1806e1b463b00c006b365e149d4'
fadc3ee16 resolve conflicts
614b3117c Merge pull request #3440 from ESMCI/fischer/aq_scam
328e3872a Merge pull request #3392 from ESMCI/mvertens/new_component_directories3
a93ced5eb need to explicitly state compiler used
bf09ad8e8 minor change to get FFLAGS
20856d803 Merge pull request #3431 from jedwards4b/complete_cprnc_fix
7fd3daebc Merge pull request #3430 from ESMCI/jgfouca/sharedlib_bld_serialization
e75142fae Merge pull request #3424 from ESMCI/cprnc_build_machine
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/e3sm/config_files.xml
M config/ufs/config_files.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
M config/ufs/machines/template.chgres.run
M config/ufs/machines/template.gfs_post.run
M doc/README
D doc/source/_static
A doc/source/_static/pop_ver.js
A doc/source/_templates/footer.html
A doc/source/_templates/layout.html
M doc/source/conf.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M scripts/tests/CMakeLists.txt
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.cprnc
D src/components/data_comps/datm/doc/bookinfo.xml
D src/components/data_comps/datm/doc/datacomps.xml
D src/components/data_comps/datm/doc/intro.xml
D src/components/data_comps/datm/doc/rundocbook.csh
D src/components/data_comps/datm/doc/streams.xml
D src/components/data_comps/datm/doc/ug.xml
D src/components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D src/components/data_comps/dwav/bld/README
R100 src/components/data_comps/datm/cime_config/buildlib src/components/data_comps_mct/datm/cime_config/buildlib
R100 src/components/data_comps/datm/cime_config/buildnml src/components/data_comps_mct/datm/cime_config/buildnml
R100 src/components/data_comps/datm/cime_config/config_archive.xml src/components/data_comps_mct/datm/cime_config/config_archive.xml
R100 src/components/data_comps/datm/cime_config/config_component.xml src/components/data_comps_mct/datm/cime_config/config_component.xml
R100 src/components/data_comps/datm/cime_config/namelist_definition_datm.xml src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
R100 src/components/data_comps/datm/cime_config/user_nl_datm src/components/data_comps_mct/datm/cime_config/user_nl_datm
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A src/components/stub_comps_nuopc/slnd/cime_config/buildlib
A src/components/stub_comps_nuopc/slnd/cime_config/buildnml
A src/components/stub_comps_nuopc/slnd/cime_config/config_component.xml
A src/components/stub_comps_nuopc/socn/cime_config/buildlib
A src/components/stub_comps_nuopc/socn/cime_config/buildnml
A src/components/stub_comps_nuopc/socn/cime_config/config_component.xml
A src/components/stub_comps_nuopc/srof/cime_config/buildlib
A src/components/stub_comps_nuopc/srof/cime_config/buildnml
A src/components/stub_comps_nuopc/srof/cime_config/config_component.xml
A src/components/stub_comps_nuopc/swav/cime_config/buildlib
A src/components/stub_comps_nuopc/swav/cime_config/buildnml
A src/components/stub_comps_nuopc/swav/cime_config/config_component.xml
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M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/Makefile.am
A src/externals/pio2/cmake/Makefile.am
M src/externals/pio2/configure.ac
M src/externals/pio2/doc/source/base.txt
M src/externals/pio2/doc/source/netcdf_integration.txt
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M src/externals/pio2/examples/c/CMakeLists.txt
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M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
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M src/externals/pio2/src/gptl/Makefile.am
M src/externals/pio2/src/ncint/ncint_pio.c
M src/externals/pio2/src/ncint/ncintdispatch.c
M src/externals/pio2/tests/cunit/CMakeLists.txt
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M src/externals/pio2/tests/cunit/run_tests.sh
A src/externals/pio2/tests/cunit/test_async_1d.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_spmd.c
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M src/share/util/shr_infnan_mod.F90.in
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-27-2020
Tag: cime5.8.16
Answer Changes: None
tests: scripts_regression_tests, aux_cam using fv3, various hand tests.
Dependencies:
Brief Summary:
- Add SE grids for CAM.
- Improved cprnc build process.
- FV3 port to CAM.
- Fix izumi submit.
- maint-5.6 branch merge(2020-02-20).
- Fix the -n parameter to mpirun in chgres workflow template.
- Initial port of CIME to Hera for the UFS MR Weather App.
- Add rpath for netcdf.
- Update laramie modules.
- Fix typo.
- Fix pylint issue.
- Add ic_filepath to config_inputdata.
- Change homebrew to macos.
- Non-netcdf files should not be compared with cprnc.
- Fix an issue in downloading inputdata.
- Update cheyenne build.
- More updates of macros.
- Update macros.
- Strictly ufs updates.
- Fix for post-processing to work with netcdf files.
- Fix auto-triage.
- Add D0 to all namelist values added in PR 3231 and 3251.
- Revert "Update nuopc esmf".
- More fixes for UFS release.
- Put MAX_MPITASKS_PER_NODE back to config_workflow.xml.
- Fix chgres issue on cheyenne.
- Update for UFS model.
- Allow writing T-forcing cplhist files even when running with SGLC.
- Update nuopc esmf.
- Fix misspelling in comment.
- Fix issue with resubmit on systems that use ssh.
- Move orbital updates to nuopc caps and update nuopc dmodels.
- Latest developments from the CIME_MODEL=ufs project.
- Fix issue when input_ic_root is None.
- Fix misleading output casestatus.
- More work related with UFS.
- Update description for FORCE_BUILD_SMP.
- Revert "update esmf and netcdf on cheyenne".
- Remove redundant logic in _get_extension.
- Pop hist dd fix.
- Homebrew build fix.
- Cheyenne machine updates.
- Correction in get_model().
- Update ufs config_files.
- Implement automatic test traiging in e3sm test infrastructure.
- Rename fv3gfs to ufsatm.
- Extend archiving support to accept a regex pattern as well as a cesm style file extension.
- Updates needed to get aux_clm tests working with CMEPS.
- Add trouble shooting doc.
- Updates input directory for UFS application.
- Changes to build fv3gfs standalone using cime.
- Support new inputdata for ufs model.
- Fixed Empty .cesm_proj file results in a crash.
- Improve scripts_regression_tests test cleanup.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2e292597 Merge pull request #3420 from ESMCI/fischer/segrids
5f75c600f Merge pull request #3400 from ESMCI/wpcoomb/improve_cprnc_build_process
f6395d42d Merge pull request #3415 from jtruesdal/fv3port
894562c87 Merge pull request #3413 from jedwards4b/fix_izumi_submit
1d406ebfa Merge pull request #3409 from ESMCI/fischer/m_maint5.6
a1ee2a564 Merge pull request #3405 from ESMCI/rsdunlapiv/chgres_mpirun_fix
d7d30df71 Merge pull request #3407 from ESMCI/rsdunlapiv/heraport2
3b42be3f0 Merge pull request #3406 from jedwards4b/mac_build_fix
1f64cbe2a Merge pull request #3402 from ESMCI/laramie_update
2a8bbd8e5 fix typo
7fe3af99b fix pylint issue
8884e2acf Merge pull request #3398 from jedwards4b/ufs_autodownload
39ce78718 change homebrew to macos
3835a137c Merge pull request #3397 from jedwards4b/dont_compare_nonnetcdf_hists
3399dd0be Merge pull request #3395 from jedwards4b/fix_issue_in_download
ae6b1a267 update cheyenne build for compatibility
e11de4814 more updates for macos
0c262b64b updates for macos
7339b0b66 strictly ufs updates
5b59975cf fix for post-processing to work with netcdf files
b5c3ca048 Merge pull request #3388 from ESMCI/jgfouca/fix_auto_triage
4c26f56e6 Merge pull request #3383 from cacraigucar/add_namelist_double
e8e9f655a Merge pull request #3386 from ESMCI/revert-3377-update_nuopc_esmf
e3b71c2f3 Merge pull request #3384 from ESMCI/uturuncoglu/ufs_release
5fe1b20e2 put MAX_MPITASKS_PER_NODE back to config_workflow.xml
846d089d8 fix chgres issue on cheyenne
f09afb134 Merge pull request #3379 from ESMCI/ufs_release
ce075935d Merge pull request #3358 from billsacks/t_forcing_cplhist_with_sglc_master
6cfcb072d Merge pull request #3377 from jedwards4b/update_nuopc_esmf
0d7fc13ab Fix misspelling in comment
307d4bb4a Merge pull request #3375 from jedwards4b/ssh_resubmit_fix
4de404425 Merge pull request #3373 from ESMCI/mvertens/update_nuopc_dmodels
d3624d963 Merge pull request #3371 from ESMCI/ufs_release
44673e0b8 fix issue when input_ic_root is None
8b8b1df5a Merge pull request #3354 from ESMCI/wpcoomb/fix_misleading_output_casestatus
bd4525df7 Merge pull request #3353 from ESMCI/ufs_release
e6ddef63f Merge pull request #3351 from ESMCI/jgfouca/update_force_build_smp_desc
5c32f2315 Merge pull request #3350 from ESMCI/revert-3343-cheyenne_machine_updates
27fd20a50 Merge pull request #3348 from billsacks/cleanup_extension_dd_match
d261fea15 Merge pull request #3346 from jedwards4b/pop_hist_dd_fix
207d1ab7d Merge pull request #3345 from jedwards4b/homebrew_build_fix
27b6d3405 Merge pull request #3343 from jedwards4b/cheyenne_machine_updates
b373a0240 correction in get_model()
2fd32ebef update ufs config_files
6d5b5ba84 Merge pull request #3340 from ESMCI/jgfouca/cime_auto_triage
5a35958e2 Merge pull request #3337 from jedwards4b/rename_fv3gfs_ufsatm
047f4ffbf Merge pull request #3326 from jedwards4b/archive_extensions
2f3876d4d Merge pull request #3335 from ESMCI/mvertens/updates_for_nuopc_regional
33ad6e314 Merge pull request #3332 from billsacks/doc_troubleshooting
00cfb7ed9 Merge pull request #3327 from jedwards4b/ufs_release_3
d13f34f15 Merge pull request #3322 from jedwards4b/fv3gfs_cime_build2
93931a0ec Merge pull request #3323 from jedwards4b/ufs_inputdata
c00ce8ff4 Merge pull request #3319 from ESMCI/wpcoomb/fix_empty_.cesm_proj_crash
2a7d36454 Merge pull request #3317 from ESMCI/jgfouca/better_regr_test_cleanup
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/cesm/machines/cylc_suite.rc.template
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
D config/ufs/config_grids_common.xml
D config/ufs/config_grids_mct.xml
D config/ufs/config_grids_nuopc.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
A config/ufs/machines/template.chgres.run
A config/ufs/machines/template.gfs_post.run
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_workflow.xsd
M config/xml_schemas/testlist.xsd
M doc/source/users_guide/troubleshooting.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/bless_test_results
M scripts/Tools/component_compare_copy
M scripts/Tools/jenkins_generic_job
M scripts/Tools/jenkins_script
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
A src/build_scripts/buildlib.cprnc
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
D src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90
D src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
D src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
D src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps/drof/nuopc/drof_comp_mod.F90
D src/components/data_comps/drof/nuopc/drof_shr_mod.F90
M src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
A src/components/data_comps/dshr_nuopc/dshr_dfield_mod.F90
A src/components/data_comps/dshr_nuopc/dshr_fldlist_mod.F90
M src/components/data_comps/dshr_nuopc/dshr_methods_mod.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
D src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
M src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/timing/perf_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Bill Sacks
Date: 11-26-2019
Tag: cime5.8.15
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Modifications for UFS Global Mid-range Weather application
- Changes for nuopc mediator updates
- Fix clean build for CLM
- Fix dlnd for gnu
- Documentation updates for building pFUnit
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
67a54f588 Merge pull request #3315 from billsacks/pass_comp_lnd_to_build
8884a9e2f config_compilers had a duplicate entry for athena
4e556447e Merge pull request #3311 from billsacks/doc_pfunit_build
3c00449df Merge pull request #3312 from ESMCI/mvertens/update_nuopc_externals
7365a820b Merge pull request #3309 from ESMCI/fischer/T1850G1_fix
e67646129 Merge pull request #3306 from ESMCI/ufs-release
1c04f4453 Update location for obtaining pFUnit (#3300)
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
A config/ufs/config_archive.xml
A config/ufs/config_files.xml
A config/ufs/config_grids.xml
A config/ufs/config_grids_common.xml
A config/ufs/config_grids_mct.xml
A config/ufs/config_grids_nuopc.xml
A config/ufs/config_inputdata.xml
A config/ufs/machines/Depends.cray
A config/ufs/machines/Depends.gnu
A config/ufs/machines/Depends.intel
A config/ufs/machines/README
A config/ufs/machines/config_batch.xml
A config/ufs/machines/config_compilers.xml
A config/ufs/machines/config_machines.xml
A config/ufs/machines/config_pio.xml
A config/ufs/machines/config_workflow.xml
A config/ufs/machines/cylc_suite.rc.template
A config/ufs/machines/template.case.run
A config/ufs/machines/template.case.test
A config/ufs/machines/template.st_archive
A config/ufs/machines/userdefined_laptop_template/README.md
A config/ufs/machines/userdefined_laptop_template/config_compilers.xml
A config/ufs/machines/userdefined_laptop_template/config_machines.xml
A config/ufs/machines/userdefined_laptop_template/config_pes.xml
M doc/source/users_guide/unit_testing.rst
M scripts/Tools/Makefile
M scripts/create_test
M scripts/lib/CIME/build.py
M scripts/lib/CIME/utils.py
M scripts/tests/CTestConfig.cmake
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/nuopc/shr_carma_mod.F90
M src/share/nuopc/shr_fire_emis_mod.F90
M src/share/nuopc/shr_megan_mod.F90
M src/share/nuopc/shr_ndep_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-11-2019
Tag: cime5.8.14
Answer Changes: None, (except for X compsets with nuopc
Tests: scripts_regression_tests, ERIO.f09_g16.X.cheyenne_intel
Dependencies:
Brief Summary:
- Revert "initialize albdif and albdir in seq_flux_mct"
- Initialize albdif and albdir in seq_flux_mct.
- Clean up env_batch.
- Test too short.
- set mpilib for custom test.
- Shorten the cime developer tests.
- Update time of day string in ERI test.
- Shr code cleanup.
- Update for compatibility with latest CMEPS.
- Omit broken netcdf4 on cheyenne with mpt.
- Exclude .ref1 and .ref2 from TestStatus files and move get_test_status_files to a common place.
- Fix issue with e3sm field.
- Minor fix to e3sm_cime_mgmt to properly handle submodules.
- Refactor how run_cmd handles strings.
- ACME merge 2019-10-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
cad8477bb Merge pull request #3297 from ESMCI/revert-3296-master_seq_flux_init
5f7bfb6a1 Merge pull request #3296 from jedwards4b/master_seq_flux_init
96455e0d6 Merge pull request #3292 from ESMCI/jgfouca/cleanup_env_batch
73dddb262 test too short
ff5a4c07c set mpilib for custom test
de2f7c3bb Merge pull request #3289 from jedwards4b/shorten_cime_developer
62a77d1d5 Merge pull request #3288 from ESMCI/fischer/eri_test
0bd9a353e Merge pull request #3285 from jedwards4b/shr_code_cleanup
1529bac14 Merge pull request #3283 from ESMCI/nems_integration_fixed2
edb013cb7 Merge pull request #3284 from jedwards4b/ERIO_on_cheyenne
cafc94139 Merge pull request #3282 from jedwards4b/fix_get_test_status_files
0945a4760 Merge pull request #3277 from jedwards4b/demand_better
db4d8df17 Minor fix to e3sm_cime_mgmt to properly handle submodules
4d6798451 Merge pull request #3273 from ESMCI/jgfouca/run_cmd_str_refactor
bb9fc0a99 Merge pull request #3272 from ESMCI/jgfouca/branch-for-acme-split-2019-10-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M scripts/create_test
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_aoflux_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/share/nuopc/glc_elevclass_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_mct_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-24-2019
Tag: cime5.8.13
Answer Changes: None
Tests: scripts_regeression_tests
Dependencies:
Brief Summary:
- Add a raw xml option to the query_config interface.
- Add --only-job option to case.submit.
User interface changes:
- Add --xml to query_config.
- Add option --only-job to case.submit.
- Fix an issue with Lockedfile error when case.submit is used with the --no-batch flag.
- Change globally uniform SST mode from AQP11 to AQPCONST.
PR summary: git log --oneline --first-parent [previous_tag]..master
f22ebdafa Merge pull request #3268 from jedwards4b/add_xml_to_query_config
ab4d53999 Merge pull request #3267 from jedwards4b/no_workflow
4cd12246f Merge pull request #3265 from jedwards4b/fix_batch_lock_issue
a45130996 Merge pull request #3257 from ESMCI/whannah/add-AQPCONST-mode
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-15-2019
Tag: cime5.8.12
Answer Changes: None
Tests: ERS.T5_T5_mg37.QPC4, scripts_regression_tests
Dependencies:
Brief Summary:
- Add missing domain files for T5_T5_mg37 grid.
- Merge maint-5.6 to master 2019-11-10.
- Updates for cam testing updates.
- Fix nuopc esmf paths.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
7f1d48fe9 Merge pull request #3263 from ESMCI/fischer/T5_grid_fix
3468404c1 Merge pull request #3260 from ESMCI/fischer/maint-5.6_merge
7070d8a5c Merge pull request #3256 from ESMCI/fischer/cam_testing
4a9b008f2 fix nuopc esmf paths
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_workflow.xsd
M scripts/create_newcase
M scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/case/case.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-01-2019
Tag: cime5.8.11
Answer Changes: None
Tests: scripts_regression_tests, Hand tested SMS_D_Vnuopc.f09_g17.X.cheyenne_intel
Dependencies:
Brief Summary:
- Correct the way esmf is built to avoid library mismatch.
- Update gnu compiler on cheyenne, bit for bit.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
693383167 Merge pull request #3252 from jedwards4b/nuopc_esmf_build_correction
fcc629127 Merge pull request #3253 from ESMCI/fischer/gnu_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-26-2019
Tag: cime5.8.10
Answer Changes: None
Tests: scripts_regression_tests, tested with nuopc
Dependencies:
Brief Summary:
- Don't call mpi_bcast on null communicator.
- Fix nag compiler flags.
- Fix issue with workflow prior to run on master.
- Merge maint-5.6.
- Update esmf paths on cheyenne for nuopc.
- Fix issue in scripts_regression_tests.py.
- Fix issue 3232
- Update DROF(JRA) to MOM6 mapping file.
- acme split 2019-09-05 merge.
- Clean up some issues in scripts_regression_tests.py.
- Add /cluster/torque/bin to path on izumi.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
809bcb3b8 Merge pull request #3248 from jedwards4b/mct_null_comm_fix
2a2b9ecfe Merge pull request #3244 from ESMCI/fischer/cam_nag_fix
5f4f1c6da Merge pull request #3243 from jedwards4b/workflow_before_run_master
23409d7e9 Merge pull request #3241 from ESMCI/fischer/maint-5.6_09182019
47b630012 Merge pull request #3239 from jedwards4b/cheyenne_esmf_update
00d664666 fix issue in scripts_regression_tests.py
474dc5fc0 fix issue 3232
209b1e19b Merge pull request #3233 from alperaltuntas/update_TL319_t061
35bc87f4f Merge pull request #3230 from ESMCI/jgfouca/branch-for-acme-split-2019-09-05
d2f7157b8 Merge pull request #3227 from jedwards4b/srt_update
8bffca6d3 Merge pull request #3221 from billsacks/izumi_add_to_path
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/machines.py
A scripts/lib/CIME/XML/stream.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/streams/shr_tInterp_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-24-2019
Tag: cime5.8.13
Answer Changes: None
Tests: scripts_regeression_tests
Dependencies:
Brief Summary:
- Add a raw xml option to the query_config interface.
- Add --only-job option to case.submit.
User interface changes:
- Add --xml to query_config.
- Add option --only-job to case.submit.
- Fix an issue with Lockedfile error when case.submit is used with the --no-batch flag.
- Change globally uniform SST mode from AQP11 to AQPCONST.
PR summary: git log --oneline --first-parent [previous_tag]..master
f22ebdafa Merge pull request #3268 from jedwards4b/add_xml_to_query_config
ab4d53999 Merge pull request #3267 from jedwards4b/no_workflow
4cd12246f Merge pull request #3265 from jedwards4b/fix_batch_lock_issue
a45130996 Merge pull request #3257 from ESMCI/whannah/add-AQPCONST-mode
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-15-2019
Tag: cime5.8.12
Answer Changes: None
Tests: ERS.T5_T5_mg37.QPC4, scripts_regression_tests
Dependencies:
Brief Summary:
- Add missing domain files for T5_T5_mg37 grid.
- Merge maint-5.6 to master 2019-11-10.
- Updates for cam testing updates.
- Fix nuopc esmf paths.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
7f1d48fe9 Merge pull request #3263 from ESMCI/fischer/T5_grid_fix
3468404c1 Merge pull request #3260 from ESMCI/fischer/maint-5.6_merge
7070d8a5c Merge pull request #3256 from ESMCI/fischer/cam_testing
4a9b008f2 fix nuopc esmf paths
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_workflow.xsd
M scripts/create_newcase
M scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/case/case.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-01-2019
Tag: cime5.8.11
Answer Changes: None
Tests: scripts_regression_tests, Hand tested SMS_D_Vnuopc.f09_g17.X.cheyenne_intel
Dependencies:
Brief Summary:
- Correct the way esmf is built to avoid library mismatch.
- Update gnu compiler on cheyenne, bit for bit.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
693383167 Merge pull request #3252 from jedwards4b/nuopc_esmf_build_correction
fcc629127 Merge pull request #3253 from ESMCI/fischer/gnu_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-26-2019
Tag: cime5.8.10
Answer Changes: None
Tests: scripts_regression_tests, tested with nuopc
Dependencies:
Brief Summary:
- Don't call mpi_bcast on null communicator.
- Fix nag compiler flags.
- Fix issue with workflow prior to run on master.
- Merge maint-5.6.
- Update esmf paths on cheyenne for nuopc.
- Fix issue in scripts_regression_tests.py.
- Fix issue 3232
- Update DROF(JRA) to MOM6 mapping file.
- acme split 2019-09-05 merge.
- Clean up some issues in scripts_regression_tests.py.
- Add /cluster/torque/bin to path on izumi.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
809bcb3b8 Merge pull request #3248 from jedwards4b/mct_null_comm_fix
2a2b9ecfe Merge pull request #3244 from ESMCI/fischer/cam_nag_fix
5f4f1c6da Merge pull request #3243 from jedwards4b/workflow_before_run_master
23409d7e9 Merge pull request #3241 from ESMCI/fischer/maint-5.6_09182019
47b630012 Merge pull request #3239 from jedwards4b/cheyenne_esmf_update
00d664666 fix issue in scripts_regression_tests.py
474dc5fc0 fix issue 3232
209b1e19b Merge pull request #3233 from alperaltuntas/update_TL319_t061
35bc87f4f Merge pull request #3230 from ESMCI/jgfouca/branch-for-acme-split-2019-09-05
d2f7157b8 Merge pull request #3227 from jedwards4b/srt_update
8bffca6d3 Merge pull request #3221 from billsacks/izumi_add_to_path
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/machines.py
A scripts/lib/CIME/XML/stream.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/streams/shr_tInterp_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-29-2019
Tag: cime5.8.9
Answer Changes: None
Tests: scripts_regression_tests --compiler nag, SMS_D_Ln9.f19_f19_mg17.QPC6.izumi_nag
Dependencies:
Brief Summary:
- Fix nag compiler for CAM.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
- 6026ca341 Merge pull request #3219 from ESMCI/fischer/nag
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.nag
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-26-2019
Tag: cime5.8.8
Answer Changes: None
Tests: scripts_regression_tests, aux_mom
Dependencies:
Brief Summary:
- Merge maint-5.6 branch.
- Add support for ne120pg3 using tx01.v3 mask.
- ACME merge 2019-08-20.
- Fix bad compset.
- Update ncpl and cpl_seq_option for mom6.
- Improve the config_compilers.xml schema.
- Overindented line fixed.
- ACME merge 2019-08-07.
- PIO2 update.
- Make sure output_root path is abspath.
- Use correct mask for ne16pg3 resolution.
- Changes to have TG compset with NUOPC cap work correctly.
- Point to new mapping files for r05 <-> f10 mapping.
- Fix some test fails.
- ACME merge 2019-07-22
- Remove test SMS.T42_T42.S when testing with nuopc driver.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a9c9289f1 Merge branch 'maint-5.6'
44fd46a43 Merge pull request #3208 from ESMCI/fischer/ne120pg3_tx13
34e3dbe77 Merge pull request #3206 from ESMCI/jgfouca/branch-for-acme-split-2019-08-20
0b1c5aab9 Merge pull request #3203 from gold2718/fix_bad_compset
1c663d0e3 Merge pull request #3198 from alperaltuntas/update_mom6_ncpl
74b5913c4 Merge pull request #3196 from jedwards4b/config_compiler_schema_improvement
b0d5c1537 Merge pull request #3197 from jedwards4b/fix_indentation
c2433ef3f Merge pull request #3195 from ESMCI/jgfouca/branch-for-acme-split-2019-08-07
74afc1fc1 Merge pull request #3194 from jedwards4b/pio2_update
97725f090 Merge pull request #3193 from jedwards4b/fix_output_root
d1efcdc44 Merge pull request #3190 from gold2718/fix_ne16pg3_mask
f1a4a59cd Merge pull request #3187 from ESMCI/mvertens/nuopc-cism-changes
f2744838b Merge pull request #3186 from billsacks/fix_r05_f10_maps
86f60dfd7 Merge pull request #3183 from ESMCI/jgfouca/fix_test_fails
b6d24eab7 Merge pull request #3181 from ESMCI/jgfouca/branch-for-acme-split-2019-07-22
d7f56ac8b Merge pull request #3178 from jedwards4b/nuopc_interface_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M scripts/Tools/Makefile
M scripts/Tools/mkDepends
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
D scripts/climate_reproducibility/requirements.txt
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/check_lockedfiles.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_domain_mct.F90
M src/drivers/moab/main/cime_comp_mod.F90
M src/externals/pio2/.travis.yml
M src/externals/pio2/configure.ac
A src/externals/pio2/doc/source/netcdf_integration.txt
M src/externals/pio2/doc/source/users_guide.txt
M src/externals/pio2/examples/Makefile.am
M src/externals/pio2/examples/c/Makefile.am
M src/externals/pio2/examples/c/darray_async.c
M src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/examplePio.c
A src/externals/pio2/examples/f03/Makefile.am
A src/externals/pio2/examples/f03/run_tests.sh
M src/externals/pio2/src/Makefile.am
M src/externals/pio2/src/clib/Makefile.am
M src/externals/pio2/src/clib/bget.c
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
A src/externals/pio2/src/clib/pio_error.h
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
M src/externals/pio2/src/clib/pio_get_vard.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
M src/externals/pio2/src/clib/pio_put_vard.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/Makefile.am
A src/externals/pio2/src/flib/ncint_mod.F90
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_support.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
A src/externals/pio2/src/ncint/Makefile.am
A src/externals/pio2/src/ncint/nc_get_vard.c
A src/externals/pio2/src/ncint/nc_put_vard.c
A src/externals/pio2/src/ncint/ncint_pio.c
A src/externals/pio2/src/ncint/ncintdispatch.c
A src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/Makefile.am
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/pio_tests.h
M src/externals/pio2/tests/cunit/test_async_mpi.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_common.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_darray_async.c
M src/externals/pio2/tests/cunit/test_darray_async_many.c
M src/externals/pio2/tests/cunit/test_darray_async_simple.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_rearr.c
A src/externals/pio2/tests/fncint/Makefile.am
A src/externals/pio2/tests/fncint/ftst_pio.f90
A src/externals/pio2/tests/fncint/ftst_pio_orig.f90
A src/externals/pio2/tests/fncint/run_tests.sh
A src/externals/pio2/tests/fncint/tst_c_pio.c
M src/externals/pio2/tests/general/Makefile.am
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
M src/externals/pio2/tests/general/ncdf_inq.F90.in
M src/externals/pio2/tests/general/pio_decomp_fillval.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_2d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_3d.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests2.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests3.F90.in
M src/externals/pio2/tests/general/pio_rearr.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts2.F90.in
M src/externals/pio2/tests/general/util/pio_tutil.F90
A src/externals/pio2/tests/ncint/Makefile.am
A src/externals/pio2/tests/ncint/run_tests.sh
A src/externals/pio2/tests/ncint/tst_pio_udf.c
M src/externals/pio2/tests/performance/Makefile.am
M src/externals/pio2/tests/unit/Makefile.am
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-19-209
Tag: cime5.8.7
Answer Changes: Climate changing for CAM ne120, ne120pg3, ne0CONUS grids
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix SE to gx1v7 domain and mapping files.
- Updates and fixes for MOM6 in cime.
- Maint 5.6 merge.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
6efe21745 Merge pull request #3177 from ESMCI/fischer/SE_gx1v7MaskFix
764ef08a0 Merge pull request #3156 from ESMCI/nuopc-cmeps-os
7a5d60356 Merge pull request #3174 from jedwards4b/maint-5.6-merge
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
A config/cesm/machines/config_workflow.xml
A config/cesm/machines/cylc_suite.rc.template
M config/config_headers.xml
M config/e3sm/config_files.xml
M config/e3sm/machines/config_batch.xml
A config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_batch.xsd
A config/xml_schemas/config_workflow.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
A scripts/Tools/generate_cylc_workflow.py
M scripts/Tools/mkDepends
M scripts/Tools/preview_run
M scripts/create_clone
M scripts/create_newcase
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
A scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/generic_xml.py
A scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/get_timing.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/share/util/shr_file_mod.F90
======================================================================
Originator: Chris Fischer
Date: 7-16-2019
Tag: cime5.8.6
Answer Changes: None
Tests: scripts_regression_tests, SMS_Ld1.f19_f19_mg17.FXSD.cheyenne_intel.cam-outfrq1d
Dependencies:
Brief Summary:
- Add back ESMF modules on cheyenne.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
07f0945e6 Merge pull request #3172 from ESMCI/fischer/fix_esmfmodules
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-12-2019
Tag: cime5.8.5
Answer Changes: bit for bit
Tests: scripts_regression_tests on izumi, SMS_Ln9.ne0CONUSne30x8_ne0CONUSne30x8_mg17.F2000climo
Dependencies:
Brief Summary:
- Add support to run SE CONUS grid with mt12 mask.
- ne120 SE grid updates.
- Changes needed for nuopc/mct mom6 validation.
- Case insensitive user_nl.
- ACME merge 2019-06-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ba5ce7f68 Merge pull request #3167 from ESMCI/fischer/SE_conusmt12
0463588af Merge pull request #3165 from ESMCI/fischer/SE_grids
910960cfe Merge pull request #3166 from ESMCI/mvertens/mom6_validation
603fcc6be Merge pull request #3157 from jedwards4b/caseinsensitive_usernl
53527bce7 Merge pull request #3154 from ESMCI/jgfouca/branch-for-acme-split-2019-06-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_grids_nuopc.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/namelist.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-24-2019
Tag: cime5.8.4
Answer Changes: None
Tests: scripts_regression_tests, code checker
Dependencies:
Brief Summary:
- Update Theia job scheduler to Slurm.
- Fix liner error.
- Update to the latest pio2 development version 2.4.4, set pio2 as default.
- Add the external files in the nuopc directory to code_checker.
- Require ids in namelist definition files to be lower case.
- Build groups need to be hashable for cesm.
- Move an Include statement in the Makefile.
- ACME merge 2019-06-10
- Change nodefail test to allow for nuopc file name difference from mct.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
8f0e3d3 Merge pull request #3150 from ESMCI/theia_to_slurm
5c379f8 fix linker error
a170130 Merge pull request #3148 from jedwards4b/pio2_update
38b5153 Merge pull request #3147 from jedwards4b/nuopc_code_checker
3c28a33 Merge pull request #3145 from jedwards4b/downcase_namelist_definition
4567384 Merge pull request #3146 from ESMCI/jgfouca/fix_test_sched_cesm
fc598a7 Merge pull request #3143 from jedwards4b/incflagfix
a3d36d3 Merge pull request #3139 from ESMCI/jgfouca/branch-for-acme-split-2019-06-10
b0a7b75 Merge pull request #3141 from jedwards4b/nuopc_nodefail_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.babbageKnc
M config/cesm/machines/Depends.cray
M config/cesm/machines/Depends.intelmic
M config/cesm/machines/Depends.intelmic14
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
D config/e3sm/machines/Depends.cetus
M config/e3sm/machines/Depends.cray
A config/e3sm/machines/Depends.cray.cmake
A config/e3sm/machines/Depends.gnu.cmake
A config/e3sm/machines/Depends.ibm
A config/e3sm/machines/Depends.ibm.cmake
A config/e3sm/machines/Depends.intel.cmake
D config/e3sm/machines/Depends.mira
M config/e3sm/machines/Depends.nag
A config/e3sm/machines/Depends.nag.cmake
A config/e3sm/machines/Depends.summit.cmake
D config/e3sm/machines/Depends.summit.ibm
M config/e3sm/machines/Depends.summit.pgiacc
A config/e3sm/machines/Depends.summit.pgiacc.cmake
D config/e3sm/machines/Depends.summitdev.ibm
M config/e3sm/machines/Depends.summitdev.pgiacc
A config/e3sm/machines/Depends.summitdev.pgiacc.cmake
A config/e3sm/machines/Depends.theta.intel.cmake
D config/e3sm/machines/Depends.titan.cray
D config/e3sm/machines/Depends.titan.intel
D config/e3sm/machines/Depends.titan.pgi
D config/e3sm/machines/Depends.titan.pgiacc
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
A config/e3sm/machines/syslog.compy
D config/e3sm/machines/syslog.edison
M config/e3sm/tests.py
M scripts/Tools/Makefile
A scripts/Tools/bld_diff
M scripts/Tools/get_standard_makefile_args
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macroconditiontree.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/CMake/CIME_initial_setup.cmake
A src/CMake/FindPETSc.cmake
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/externals/pio2/.gitignore
A src/externals/pio2/.travis.yml
M src/externals/pio2/CMakeLists.txt
A src/externals/pio2/COPYRIGHT
M src/externals/pio2/Makefile.am
M src/externals/pio2/README.md
M src/externals/pio2/cmake_config.h.in
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M src/externals/pio2/ctest/runcdash-nwscla-gnu.sh
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/ctest/runcdash-nwscla-pgi.sh
M src/externals/pio2/doc/Doxyfile.in
M src/externals/pio2/doc/DoxygenLayout.xml
A src/externals/pio2/doc/Makefile.am
A src/externals/pio2/doc/images/I_O_on_Few.png
A src/externals/pio2/doc/images/I_O_on_Many_Async.png
A src/externals/pio2/doc/images/I_O_on_Many_Intracomm.png
A src/externals/pio2/doc/images/Makefile.am
A src/externals/pio2/doc/images/PIO_Async.png
A src/externals/pio2/doc/images/PIO_Decomposition.png
A src/externals/pio2/doc/images/PIO_Intracomm1.png
A src/externals/pio2/doc/images/PIO_Library_Architecture1.jpg
M src/externals/pio2/doc/source/Decomp.txt
M src/externals/pio2/doc/source/Error.txt
M src/externals/pio2/doc/source/Examples.txt
D src/externals/pio2/doc/source/GettingStarted.txt
M src/externals/pio2/doc/source/Installing.txt
A src/externals/pio2/doc/source/Introduction.txt
A src/externals/pio2/doc/source/Makefile.am
M src/externals/pio2/doc/source/Testing.txt
M src/externals/pio2/doc/source/api.txt
M src/externals/pio2/doc/source/base.txt
A src/externals/pio2/doc/source/c_api.txt
M src/externals/pio2/doc/source/contributing_code.txt
M src/externals/pio2/doc/source/faq.txt
A src/externals/pio2/doc/source/iosystem.txt
M src/externals/pio2/doc/source/mach_walkthrough.txt
M src/externals/pio2/doc/source/testpio_example.txt
A src/externals/pio2/doc/source/users_guide.txt
M src/externals/pio2/examples/CMakeLists.txt
M src/externals/pio2/examples/c/Makefile.am
M src/externals/pio2/examples/c/darray_async.c
M src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/examples/c/example2.c
M src/externals/pio2/examples/c/examplePio.c
M src/externals/pio2/examples/c/run_tests.sh
A src/externals/pio2/scripts/Makefile.am
A src/externals/pio2/scripts/genf90.pl
A src/externals/pio2/set_flags.am
M src/externals/pio2/src/Makefile.am
M src/externals/pio2/src/clib/CMakeLists.txt
M src/externals/pio2/src/clib/Makefile.am
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
A src/externals/pio2/src/clib/pio_get_vard.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
A src/externals/pio2/src/clib/pio_put_vard.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/clib/topology.c
A src/externals/pio2/src/clib/uthash.h
A src/externals/pio2/src/flib/Makefile.am
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_kinds.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_support.F90
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
A src/externals/pio2/src/gptl/Makefile.am
A src/externals/pio2/src/gptl/f_wrappers_2.c
M src/externals/pio2/src/gptl/perf_mod.F90
M src/externals/pio2/tests/Makefile.am
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/pio_tests.h
M src/externals/pio2/tests/cunit/run_tests.sh
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
M src/externals/pio2/tests/cunit/test_async_manyproc.c
M src/externals/pio2/tests/cunit/test_async_mpi.c
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
A src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_common.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_darray_1d.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_3d.c
M src/externals/pio2/tests/cunit/test_darray_async.c
M src/externals/pio2/tests/cunit/test_darray_async_many.c
M src/externals/pio2/tests/cunit/test_darray_async_simple.c
M src/externals/pio2/tests/cunit/test_darray_fill.c
M src/externals/pio2/tests/cunit/test_darray_frame.c
M src/externals/pio2/tests/cunit/test_darray_multi.c
M src/externals/pio2/tests/cunit/test_darray_multivar.c
M src/externals/pio2/tests/cunit/test_darray_multivar2.c
M src/externals/pio2/tests/cunit/test_darray_multivar3.c
A src/externals/pio2/tests/cunit/test_darray_vard.c
M src/externals/pio2/tests/cunit/test_decomp_frame.c
M src/externals/pio2/tests/cunit/test_decomp_uneven.c
M src/externals/pio2/tests/cunit/test_decomps.c
M src/externals/pio2/tests/cunit/test_intercomm2.c
M src/externals/pio2/tests/cunit/test_iosystem2.c
M src/externals/pio2/tests/cunit/test_iosystem2_simple.c
M src/externals/pio2/tests/cunit/test_iosystem2_simple2.c
M src/externals/pio2/tests/cunit/test_iosystem3.c
M src/externals/pio2/tests/cunit/test_iosystem3_simple.c
M src/externals/pio2/tests/cunit/test_iosystem3_simple2.c
A src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_pioc.c
M src/externals/pio2/tests/cunit/test_pioc_fill.c
M src/externals/pio2/tests/cunit/test_pioc_putget.c
M src/externals/pio2/tests/cunit/test_pioc_unlim.c
M src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/cunit/test_shared.c
M src/externals/pio2/tests/cunit/test_spmd.c
A src/externals/pio2/tests/general/Makefile.am
A src/externals/pio2/tests/general/run_tests.sh
M src/externals/pio2/tests/general/test_memleak.c
A src/externals/pio2/tests/general/util/Makefile.am
M src/externals/pio2/tests/general/util/pio_tutil.F90
A src/externals/pio2/tests/performance/Makefile.am
A src/externals/pio2/tests/performance/Pioperformance.md
A src/externals/pio2/tests/performance/pioperf.nl
M src/externals/pio2/tests/performance/pioperformance.F90
A src/externals/pio2/tests/performance/run_tests.sh
A src/externals/pio2/tests/unit/Makefile.am
A src/externals/pio2/tests/unit/run_tests.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-7-2019
Tag: cime5.8.3
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests.py with CIME_DRIVER=nuopc,
scripts_regression_tests
Dependencies:
Brief Summary:
- Add logic to control activation of glcshelf_c2_ice.
- Fix nuopc build, update for stamepede esmf lib.
- Fixes for nuopc scripts_regressions_tests.
- Merge branch master.
- Merge branch master.
- Merge acme split 2019-5-28
- Remove the nuopc driver and mediator to a separate repository https://github.com/ESCOMP/CMEPS.git
- New documentation explaining how to invoked the --user-mods-dir option to create_newcase.
- Update cheyenne intel compiler, add DOI.
- Provide default for the number of create_test parallel jobs.
- Use truncated division operator in SEQ SystemTest for py2+3 compatibility.
- Merge maint-5.6.
- Merge acme split 2019-05-14.
- Fix typo.
- Send the case2 TestStatus.log updates to the case1 file.
- Small upgrade to e3sm_cime_mgmt.
- Optional arguments run_exe and run_misc_suffix not required.
- Fix ConfigParser fails with some saved submit_options.
- Allow custom run_exe and run_misc_suffix.
- Nuopc cmeps.
- Add NLDAS2 datm forcing option.
- Change DATM_CLMNCEP_YR_ALIGN for present-day compsets.
- Merge acme split 2019-04-29
- Fix for edison.
- Update modules cheyenne.
- Poperly link nag f90.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
9f39361 Add logic to control activation of glcshelf_c2_ice (#3131)
f383ae6 Merge pull request #3137 from jedwards4b/build_fix
caa0dcf fixes for nuopc scripts_regressions_tests to work
a8bf363 Merge branch 'master' of https://github.com/ESMCI/cime
1b211e3 Merge branch 'master' of https://github.com/ESMCI/cime
5c43a15 Merge pull request #3123 from ESMCI/jgfouca/branch-for-acme-split-2019-05-28
6493b34 Merge pull request #3126 from jedwards4b/nuopc-cmeps
4f20a4b Merge pull request #3124 from ESMCI/mvertens/usermodsdoc
13c2757 Merge pull request #3120 from jedwards4b/cheyenne_compiler_and_doi
a224635 Merge pull request #3115 from ESMCI/jhkennedy/test-concurrent-tasks
ea3d1bf Merge pull request #3118 from ESMCI/jhkennedy/seq-test-py3
6d8b2a3 Merge pull request #3117 from jedwards4b/maint-5.6-merge
25c0d52 Merge pull request #3111 from ESMCI/jgfouca/branch-for-acme-split-2019-05-14
ee02675 Fix typo
d495bef Merge pull request #3107 from jedwards4b/compare_two_status_to_original_case
b7892a9 Small upgrade to e3sm_cime_mgmt
f951cfe Merge pull request #3103 from jedwards4b/optional_args_required
651663a Merge pull request #3100 from ESMCI/jhkennedy/RawConfigParser
9105342 Merge pull request #3099 from ESMCI/jhkennedy/custom-run_exe-3081
5cf618a Merge pull request #3101 from jedwards4b/nuopc-cmeps
b896c79 Merge pull request #3098 from billsacks/nldas_forcing_v2
3a705ff Merge pull request #3093 from billsacks/datm_yralign_v2
5c31dc0 Merge pull request #3096 from ESMCI/jgfouca/branch-for-acme-split-2019-04-29
edf6f84 Merge pull request #3091 from jedwards4b/edison_port
35068d0 Merge pull request #3089 from jedwards4b/updatemodulescheyenne
f0f0b60 Merge pull request #3088 from jedwards4b/fixnagissue
Modified files: git diff --name-status [previous_tag]
M .gitignore
M README.md
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/machines/syslog.anvil
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/machine.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/check_lockedfiles.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.kokkos
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
M src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/nuopc/drof_comp_mod.F90
M src/components/data_comps/drof/nuopc/drof_shr_mod.F90
M src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
A src/components/data_comps/dshr_nuopc/dshr_methods_mod.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
M src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
D src/components/stub_comps/satm/nuopc/atm_comp_nuopc.F90
D src/components/stub_comps/sglc/nuopc/glc_comp_nuopc.F90
D src/components/stub_comps/sice/nuopc/ice_comp_nuopc.F90
D src/components/stub_comps/slnd/nuopc/lnd_comp_nuopc.F90
D src/components/stub_comps/socn/nuopc/ocn_comp_nuopc.F90
D src/components/stub_comps/srof/nuopc/rof_comp_nuopc.F90
D src/components/stub_comps/swav/nuopc/wav_comp_nuopc.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xshare/mct/dead_mod.F90
A src/components/xcpl_comps/xshare/nuopc/dead_methods_mod.F90
M src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/prep_ice_mod.F90
M src/drivers/mct/main/prep_ocn_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
D src/drivers/nuopc/cime_config/buildexe
D src/drivers/nuopc/cime_config/buildnml
D src/drivers/nuopc/cime_config/config_archive.xml
D src/drivers/nuopc/cime_config/config_component.xml
D src/drivers/nuopc/cime_config/config_component_cesm.xml
D src/drivers/nuopc/cime_config/config_compsets.xml
D src/drivers/nuopc/cime_config/config_pes.xml
D src/drivers/nuopc/cime_config/namelist_definition_drv.xml
D src/drivers/nuopc/cime_config/namelist_definition_drv_flds.xml
D src/drivers/nuopc/cime_config/namelist_definition_modelio.xml
D src/drivers/nuopc/cime_config/nuopc_runseq_A
D src/drivers/nuopc/cime_config/nuopc_runseq_ADLND
D src/drivers/nuopc/cime_config/nuopc_runseq_ADWAV
D src/drivers/nuopc/cime_config/nuopc_runseq_B
D src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D_swav
D src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D_ww3
D src/drivers/nuopc/cime_config/nuopc_runseq_C_wav
D src/drivers/nuopc/cime_config/nuopc_runseq_F
D src/drivers/nuopc/cime_config/nuopc_runseq_I
D src/drivers/nuopc/cime_config/nuopc_runseq_I_mosart
D src/drivers/nuopc/cime_config/nuopc_runseq_NEMS
D src/drivers/nuopc/cime_config/nuopc_runseq_NEMS.cold
D src/drivers/nuopc/cime_config/nuopc_runseq_NEMS.warm
D src/drivers/nuopc/cime_config/nuopc_runseq_Q
D src/drivers/nuopc/cime_config/nuopc_runseq_X
D src/drivers/nuopc/cime_config/nuopc_runseq_default
D src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml
D src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
D src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
D src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/include_user_mods
D src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/shell_commands
D src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/som/shell_commands
D src/drivers/nuopc/cime_config/user_nl_cpl
D src/drivers/nuopc/cime_driver/ensemble_driver.F90
D src/drivers/nuopc/cime_driver/esm.F90
D src/drivers/nuopc/cime_driver/esmApp.F90
D src/drivers/nuopc/cime_driver/t_driver_timers_mod.F90
D src/drivers/nuopc/cime_driver/util.F90
D src/drivers/nuopc/cime_flds/esmFlds.F90
D src/drivers/nuopc/cime_flds/esmFldsExchange.F90
D src/drivers/nuopc/cime_flds/fd.yaml
D src/drivers/nuopc/cime_flds_shr/glc_elevclass_mod.F90
D src/drivers/nuopc/cime_flds_shr/seq_drydep_mod.F90
D src/drivers/nuopc/cime_flds_shr/shr_carma_mod.F90
D src/drivers/nuopc/cime_flds_shr/shr_fire_emis_mod.F90
D src/drivers/nuopc/cime_flds_shr/shr_megan_mod.F90
D src/drivers/nuopc/cime_flds_shr/shr_ndep_mod.F90
D src/drivers/nuopc/mediator/ESMFConvenienceMacros.h
D src/drivers/nuopc/mediator/ESMFVersionDefine.h
D src/drivers/nuopc/mediator/med.F90
D src/drivers/nuopc/mediator/med_fraction_mod.F90
D src/drivers/nuopc/mediator/med_internalstate_mod.F90
D src/drivers/nuopc/mediator/med_io_mod.F90
D src/drivers/nuopc/mediator/med_map_mod.F90
D src/drivers/nuopc/mediator/med_merge_mod.F90
D src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
D src/drivers/nuopc/mediator/med_phases_history_mod.F90
D src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_glc_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
D src/drivers/nuopc/mediator/med_phases_prep_wav_mod.F90
D src/drivers/nuopc/mediator/med_phases_profile_mod.F90
D src/drivers/nuopc/mediator/med_phases_restart_mod.F90
D src/drivers/nuopc/shr/CMakeLists.txt
D src/drivers/nuopc/shr/med_constants_mod.F90
D src/drivers/nuopc/shr/shr_expr_parser_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_multiinst_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_scalars_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_time_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_utils_mod.F90
A src/share/nuopc/glc_elevclass_mod.F90
A src/share/nuopc/seq_drydep_mod.F90
A src/share/nuopc/shr_carma_mod.F90
A src/share/nuopc/shr_expr_parser_mod.F90
A src/share/nuopc/shr_fire_emis_mod.F90
A src/share/nuopc/shr_megan_mod.F90
A src/share/nuopc/shr_ndep_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_pio_mod.F90
M tools/statistical_ensemble_test/README
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-23-2019
Tag: cime5.8.2
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Update the ne0CONUSne30x8 mapping files.
- Allow specific tests to ignore field list differences.
- Add NLDAS grid for CTSM and MOSART.
- Merge branch for acme split 2019-04-15
- Fix unit test.
- Introduces a new stub IAC.
- Master merge to nuopc cmeps.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
57cf4a5 Merge pull request #3086 from ESMCI/fischer/ne_conus
421cc98 Merge pull request #3084 from billsacks/cprnc_ignore_fieldlist_diffs
a356310 Merge pull request #3063 from billsacks/nldas_grid_v2
14babd5 Merge pull request #3079 from ESMCI/jgfouca/branch-for-acme-split-2019-04-15
74730fe fix for unit test
4e86cc0 Merge pull request #3055 from bishtgautam/bishtgautam/iac
279d30a Merge pull request #3075 from jedwards4b/master-merge-to-nuopc-cmeps
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/entry_id_base_version3.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/case.build
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
M src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
M src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/nuopc/drof_comp_mod.F90
M src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
M src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
A src/components/stub_comps/siac/cime_config/buildlib
A src/components/stub_comps/siac/cime_config/buildnml
A src/components/stub_comps/siac/cime_config/config_component.xml
A src/components/stub_comps/siac/mct/iac_comp_mct.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/config_pes.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/namelist_definition_modelio.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/component_type_mod.F90
M src/drivers/mct/main/prep_atm_mod.F90
A src/drivers/mct/main/prep_iac_mod.F90
M src/drivers/mct/main/prep_lnd_mod.F90
M src/drivers/mct/main/seq_frac_mct.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
M src/drivers/nuopc/cime_config/buildnml
M src/drivers/nuopc/cime_config/config_component.xml
M src/drivers/nuopc/cime_config/config_component_cesm.xml
M src/drivers/nuopc/cime_config/nuopc_runseq_A
M src/drivers/nuopc/cime_config/nuopc_runseq_ADLND
M src/drivers/nuopc/cime_config/nuopc_runseq_ADWAV
M src/drivers/nuopc/cime_config/nuopc_runseq_B
D src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D
A src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D_swav
A src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D_ww3
A src/drivers/nuopc/cime_config/nuopc_runseq_C_wav
M src/drivers/nuopc/cime_config/nuopc_runseq_F
M src/drivers/nuopc/cime_config/nuopc_runseq_I
M src/drivers/nuopc/cime_config/nuopc_runseq_I_mosart
M src/drivers/nuopc/cime_config/nuopc_runseq_NEMS
A src/drivers/nuopc/cime_config/nuopc_runseq_NEMS.cold
A src/drivers/nuopc/cime_config/nuopc_runseq_NEMS.warm
M src/drivers/nuopc/cime_config/nuopc_runseq_Q
M src/drivers/nuopc/cime_config/nuopc_runseq_X
M src/drivers/nuopc/cime_config/nuopc_runseq_default
M src/drivers/nuopc/cime_driver/esmApp.F90
M src/drivers/nuopc/cime_flds/esmFlds.F90
M src/drivers/nuopc/cime_flds/esmFldsExchange.F90
M src/drivers/nuopc/cime_flds/fd.yaml
M src/drivers/nuopc/cime_flds_shr/seq_drydep_mod.F90
M src/drivers/nuopc/cime_flds_shr/shr_carma_mod.F90
M src/drivers/nuopc/cime_flds_shr/shr_fire_emis_mod.F90
M src/drivers/nuopc/cime_flds_shr/shr_megan_mod.F90
M src/drivers/nuopc/cime_flds_shr/shr_ndep_mod.F90
M src/drivers/nuopc/mediator/med.F90
D src/drivers/nuopc/mediator/med_connectors_mod.F90
M src/drivers/nuopc/mediator/med_fraction_mod.F90
D src/drivers/nuopc/mediator/med_infodata_mod.F90
M src/drivers/nuopc/mediator/med_internalstate_mod.F90
M src/drivers/nuopc/mediator/med_io_mod.F90
M src/drivers/nuopc/mediator/med_map_mod.F90
M src/drivers/nuopc/mediator/med_merge_mod.F90
M src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
M src/drivers/nuopc/mediator/med_phases_history_mod.F90
M src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_glc_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_wav_mod.F90
M src/drivers/nuopc/mediator/med_phases_restart_mod.F90
M src/drivers/nuopc/shr/med_constants_mod.F90
D src/drivers/nuopc/shr/shr_nuopc_grid_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_utils_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 04-08-2019
Tag: cime5.8.1
Answer Changes: None
Tests: scripts_regression_tests, many create_newcase with mangled compset names
hand test xmllint
Dependencies:
Brief Summary:
- Support optional components by filling in stub models for any missing component class
- Merge maint-5.6 branch.
- Fix issue with xmllint.
- Use installed pio libraries.
- Make FIELDLIST message more informative.
- ACME merge 2019-03-29
- cprnc: allow differences in field lists for time-constant fields.
- Merge maint-5.6 branch.
- Add ne0CONUSne30x8_ne0CONUSne30x8_mg17 grid alias.
- Merge in latest nuopc-cmeps development.
- The check for an rpointer.drv file did not consider multidriver mode.
- Fix ./case.build --clean.
- PET and ERP tests were not setting compile_threaded correctly.
- Implement 'share' field of test suites.
User interface changes:
- Stub components are now optional in compset long names. Also there is less order dependency.
PR summary: git log --oneline --first-parent [previous_tag]..master
444b2f4 Merge pull request #3068 from gold2718/optional_components
c1a4c49 Merge branch 'maint-5.6'
150c2b5 Merge pull request #3061 from jedwards4b/fix_cesm_config_files
9b0be41 Merge pull request #3058 from jedwards4b/use_installed_libraries
ae332d4 Merge pull request #3059 from billsacks/fieldlist_differ_message
d94860f Merge pull request #3054 from ESMCI/jgfouca/branch-for-acme-split-2019-03-29
95e117c Merge pull request #3051 from billsacks/cprnc_allow_timeconst_fielddiffs
338c143 Merge pull request #3052 from ESMCI/maint-5.6
c82a5ee Merge pull request #3048 from ESMCI/fischer/SE_grids
1bb357c Merge pull request #3046 from jedwards4b/nuopc-cmeps
94d6da8 Merge pull request #3045 from jedwards4b/multi_driver_continue
9f5fb60 Merge pull request #3043 from ESMCI/jgfouca/fix_build_clean
ff06fd0 Merge pull request #3042 from ESMCI/jedwards/pet_test_fix
bafad7e Merge pull request #3040 from ESMCI/jgfouca/impl_share_field
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M config/e3sm/config_grids.xml
M config/e3sm/config_inputdata.xml
M config/e3sm/machines/Depends.cetus
M config/e3sm/machines/Depends.mira
M config/e3sm/machines/Depends.summit.ibm
M config/e3sm/machines/Depends.summitdev.ibm
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
M config/e3sm/tests.py
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M doc/source/users_guide/cime-config.rst
M doc/source/users_guide/unit_testing.rst
M scripts/Tools/Makefile
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/valuesetting.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
M src/components/data_comps/desp/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/util/shr_flux_mod.F90
M tools/cprnc/README
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/cprnc.F90
M tools/cprnc/filestruct.F90
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/multipleTimes_someTimeless_extra_and_missing.nc
A tools/cprnc/test_inputs/noTime_extra_and_missing.nc
M tools/mapping/gen_domain_files/README
M tools/mapping/gen_domain_files/src/gen_domain.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 03-12-2019
Tag: cime5.8.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Merge maint-5.6 branch.
- Cleanup of build.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5f939ae Merge pull request #3039 from ESMCI/maint-5.6
3ebf15e Merge pull request #3024 from jedwards4b/jedwards/standard_makefile_args
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids_nuopc.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
A scripts/Tools/get_standard_makefile_args
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/check_input_data.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/drivers/mct/cime_config/buildexe
M src/drivers/nuopc/cime_config/buildexe
M src/share/timing/Makefile
======================================================================
======================================================================
Originator: Bill Sacks
Date: 03-08-2019
Tag: cime5.7.9
Answer Changes: roundoff differences and namelist changes in NYF forced cases for mct (from #3020)
Tests: scripts_regression_tests, CTSM's aux_clm test suite
Dependencies:
Brief Summary:
- Fix cheyenne for recent machine update (from maint-5.6 merge)
- New inputdata chksum feature (from maint-5.6 merge)
- Update NYF CORE2 DROF data stream file
- Update support for CAM-SE grids
- Misc changes from E3SM split
- Misc additional changes from maint-5.6 branch
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
518bddb73 Merge pull request #3030 from ESMCI/fischer/SE_grids
eb2eb704f Merge branch 'maint-5.6' for PR 3029
69b5419f5 fix typo
dedae2335 fix py3 error
460fac35f fix testing on centos7-linux
549c8d39b Merge pull request #3021 from ESMCI/jgfouca/branch-for-acme-split-2019-02-28
e91008eed Fix minor bug in e3sm mgmt
191289eb0 Merge pull request #3020 from alperaltuntas/fix_core2_nyf_datastream
5f7029e93 Merge pull request #3016 from colleenRooney/coeus-xml-config
Modified files: git diff --name-status [previous_tag]
M ChangeLog
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/config_compilers_v2.xsd
M doc/source/misc_tools/ect.rst
M scripts/Tools/Makefile
M scripts/Tools/check_input_data
M scripts/create_test
M scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/BuildTools/makemacroswriter.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
A src/build_scripts/buildlib.kokkos
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/externals/pio1/pio/pio_types.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/share/timing/gptl.c
M src/share/timing/private.h
======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-25-2019
Tag: cime5.7.8
Answer Changes: answer changes in all CORE2 and JRA forced cases (because coldair_outbreak_mod turned off)
Tests: scripts_regression_tests, SMS_D_Ln9.T42_T42.FSCAM.cheyenne_intel.cam-scam_mpace_outfrq9s
Dependencies:
Brief Summary:
- Split the cesm/config_grids.xml file into 4 parts add new schema.
- Add ne30np4 and ne30pg3 grid support
- Fix deprecated flag.
- Merge to latest pio2 version.
- Fix issues with centos7-linux build.
- Merge in latest nuopc-cmeps development code.
- Merge maint-5.6
- Port to athena.
- Fix CIME dashboad regression tests.
- Port to new cgd system izumi.
- Report missing variables in cprnc(cprnc changes on machines backed outed to fix failing tests)
- Avoid an error message when CIME_MODEL is cesm - CAM_TARGET is not defined.
- Modifications to allow for E3SM developer tests for the SE SCM.
- Add a test for tools/configure.
- Minor JRA & CORE2 DATM forcing changes
- Remove debug print
- Fix test issue for cesm.
- Better handling of file permissions when copying files.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5f31182 Merge pull request #3014 from jedwards4b/config_grids_v2.1
9e2c5e9 Merge pull request #3015 from ESMCI/fischer/ne30_support
25d2332 fix deprecated flag
d13fb72 Merge pull request #3009 from jedwards4b/pio2_merge_0c390bf9c
ed1a6f4 Merge pull request #3013 from jedwards4b/centos7-linux-update
8c45f67 Merge pull request #3011 from jedwards4b/nuopc-cmeps
3b76217 Merge pull request #3008 from ESMCI/maint-5.6
ba09f0a Merge pull request #3006 from ESMCI/jedwards/athena_port
dd162f2 Merge pull request #3003 from ESMCI/jgfouca/fix_failing_tests
a4faaf4 Merge pull request #3000 from jedwards4b/izumi_port_5.6
51ab1c1 Merge pull request #2988 from billsacks/cprnc_report_fieldlist_change
a5bea3a Merge pull request #2992 from jedwards4b/cam_target_error
4c79172 Merge pull request #2990 from ESMCI/bogensch/SCM_SE_test
5fa1832 Merge pull request #2985 from ESMCI/jgfouca/add_test_for_config
9adff6a Merge pull request #2984 from alperaltuntas/jra_updates
60b93de remove debug print
63738cb fix test issue for cesm
a7938a3 Merge pull request #2983 from ESMCI/jgfouca/better_perm_mgmt_copy
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
A config/cesm/config_grids_common.xml
A config/cesm/config_grids_mct.xml
A config/cesm/config_grids_nuopc.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/config_files.xml
M config/e3sm/tests.py
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_compilers_v2.xsd
A config/xml_schemas/config_grids_v2.1.xsd
M doc/source/data_models/data-atm.rst
M doc/source/users_guide/cloning-a-case.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/nuopc/cime_config/buildexe
M src/drivers/nuopc/cime_config/buildnml
M src/drivers/nuopc/cime_config/config_component.xml
M src/drivers/nuopc/cime_config/config_component_cesm.xml
D src/drivers/nuopc/cime_config/config_component_e3sm.xml
D src/drivers/nuopc/cime_config/fd.yaml
M src/drivers/nuopc/cime_config/namelist_definition_drv.xml
A src/drivers/nuopc/cime_config/nuopc_runseq_A
A src/drivers/nuopc/cime_config/nuopc_runseq_ADLND
A src/drivers/nuopc/cime_config/nuopc_runseq_ADWAV
A src/drivers/nuopc/cime_config/nuopc_runseq_B
A src/drivers/nuopc/cime_config/nuopc_runseq_C_G_D
A src/drivers/nuopc/cime_config/nuopc_runseq_F
A src/drivers/nuopc/cime_config/nuopc_runseq_I
A src/drivers/nuopc/cime_config/nuopc_runseq_I_mosart
A src/drivers/nuopc/cime_config/nuopc_runseq_NEMS
A src/drivers/nuopc/cime_config/nuopc_runseq_Q
A src/drivers/nuopc/cime_config/nuopc_runseq_X
A src/drivers/nuopc/cime_config/nuopc_runseq_default
M src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml
M src/drivers/nuopc/cime_driver/ensemble_driver.F90
M src/drivers/nuopc/cime_driver/esm.F90
M src/drivers/nuopc/cime_driver/esmApp.F90
D src/drivers/nuopc/cime_flds/esmDict.F90
M src/drivers/nuopc/cime_flds/esmFlds.F90
A src/drivers/nuopc/cime_flds/esmFldsExchange.F90
A src/drivers/nuopc/cime_flds/fd.yaml
D src/drivers/nuopc/cime_flds/glc_elevclass_mod.F90
D src/drivers/nuopc/cime_flds/seq_drydep_mod.F90
D src/drivers/nuopc/cime_flds/shr_carma_mod.F90
D src/drivers/nuopc/cime_flds/shr_fire_emis_mod.F90
D src/drivers/nuopc/cime_flds/shr_flds_mod.F90
D src/drivers/nuopc/cime_flds/shr_megan_mod.F90
D src/drivers/nuopc/cime_flds/shr_ndep_mod.F90
A src/drivers/nuopc/cime_flds_shr/glc_elevclass_mod.F90
A src/drivers/nuopc/cime_flds_shr/seq_drydep_mod.F90
A src/drivers/nuopc/cime_flds_shr/shr_carma_mod.F90
A src/drivers/nuopc/cime_flds_shr/shr_fire_emis_mod.F90
A src/drivers/nuopc/cime_flds_shr/shr_megan_mod.F90
A src/drivers/nuopc/cime_flds_shr/shr_ndep_mod.F90
M src/drivers/nuopc/mediator/med.F90
M src/drivers/nuopc/mediator/med_fraction_mod.F90
M src/drivers/nuopc/mediator/med_infodata_mod.F90
M src/drivers/nuopc/mediator/med_internalstate_mod.F90
M src/drivers/nuopc/mediator/med_io_mod.F90
M src/drivers/nuopc/mediator/med_map_mod.F90
M src/drivers/nuopc/mediator/med_merge_mod.F90
M src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
M src/drivers/nuopc/mediator/med_phases_history_mod.F90
M src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
M src/drivers/nuopc/mediator/med_phases_profile_mod.F90
M src/drivers/nuopc/mediator/med_phases_restart_mod.F90
D src/drivers/nuopc/shr/seq_comm_mct.F90
D src/drivers/nuopc/shr/shr_nuopc_fldList_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_multiinst_mod.F90
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/README.md
M src/externals/pio2/cmake/FindNetCDF.cmake
M src/externals/pio2/cmake/LibMPI.cmake
M src/externals/pio2/cmake/mpiexec.nwscla
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/doc/Doxyfile.in
M src/externals/pio2/examples/c/darray_async.c
M src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_darray_1d.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_multi.c
M src/externals/pio2/tests/cunit/test_darray_multivar3.c
M src/externals/pio2/tests/cunit/test_pioc.c
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/share/timing/Makefile
M src/share/timing/perf_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_frz_mod.F90.in
M src/share/util/shr_mem_mod.F90
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_reprosum_mod.F90
M tools/cprnc/README
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/cprnc.F90
M tools/cprnc/filestruct.F90
M tools/cprnc/run_tests
M tools/cprnc/test_inputs/README
A tools/cprnc/test_inputs/control_attributes.nc
A tools/cprnc/test_inputs/control_char.nc
A tools/cprnc/test_inputs/copy_char.nc
A tools/cprnc/test_inputs/diffs_in_attribute.nc
A tools/cprnc/test_inputs/diffs_in_vals_and_extra_and_missing.nc
A tools/cprnc/test_inputs/extra_variables.nc
A tools/cprnc/test_inputs/missing_variables.nc
======================================================================
======================================================================
Originator: Chris Fischer
Date: 1-15-2019
Tag: cime5.7.7
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Minor fix to e3sm_cime_mgmt to properly handle exe files.
- Merge branch for acme split 2019-01-14.
- e3sm_cime_mgmt: big upgrade/refactor to auto conf handling
- Add expected failure annotations to cs.status output.
- Bringing the latest nuopc development to master.
- Changes for PGI 18.4.
- Bring in the latest pio1 from external .
- Fix Case context manager enforcement.
- Update to pio 130c564.
- docn_comp_mod needs fix for optional variable.
- Remove support for CLM4.0.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
e5c2368 Minor fix to e3sm_cime_mgmt to properly handle exe files
222df09 Merge pull request #2979 from ESMCI/jgfouca/branch-for-acme-split-2019-01-14
20a635a Merge pull request #2980 from ESMCI/jgfouca/e3sm_cime_mgmt_upgrade
26a18ff Merge pull request #2962 from billsacks/cs_status_expected_fails
86ab407 Merge pull request #2976 from jedwards4b/nuopc-cmeps
f560074 Merge pull request #2974 from fvitt/misc_fixes
e166e75 Merge pull request #2975 from jedwards4b/pio1_update
71acf83 Merge pull request #2972 from ESMCI/jgfouca/fix_case_ctx_mgr
0c6f294 Merge pull request #2967 from jedwards4b/pio2_merge_130c564
aa8b0fa Merge pull request #2970 from jedwards4b/test_fixes
74d03b7 Merge pull request #2968 from billsacks/cesm_remove_clm4_rebased
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/syslog.anvil
D config/e3sm/machines/syslog.cetus
M config/e3sm/machines/syslog.cori-haswell
M config/e3sm/machines/syslog.cori-knl
M config/e3sm/machines/syslog.edison
D config/e3sm/machines/syslog.mira
M config/e3sm/machines/syslog.summit
M config/e3sm/machines/syslog.theta
M config/e3sm/machines/syslog.titan
M config/xml_schemas/config_compilers_v2.xsd
A config/xml_schemas/expected_fails_file.xsd
M scripts/Tools/Makefile
M scripts/Tools/cs.status
M scripts/create_test
M scripts/lib/CIME/SystemTests/README
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/SystemTests/tsc.py
A scripts/lib/CIME/XML/expected_fails_file.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/cs_status.py
A scripts/lib/CIME/expected_fails.py
M scripts/lib/CIME/test_status.py
A scripts/lib/CIME/tests/XML/__init__.py
A scripts/lib/CIME/tests/XML/test_expected_fails_file.py
A scripts/lib/CIME/tests/custom_assertions_test_status.py
M scripts/lib/CIME/tests/test_cs_status.py
A scripts/lib/CIME/tests/test_custom_assertions_test_status.py
A scripts/lib/CIME/tests/test_test_status.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
D scripts/testlist_cmeps.xml
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/nuopc/cime_config/buildnml
M src/drivers/nuopc/cime_config/config_component_cesm.xml
M src/drivers/nuopc/cime_config/fd.yaml
M src/drivers/nuopc/cime_config/namelist_definition_drv.xml
M src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml
M src/drivers/nuopc/cime_flds/esmFlds.F90
M src/drivers/nuopc/mediator/med.F90
M src/drivers/nuopc/mediator/med_map_mod.F90
M src/drivers/nuopc/mediator/med_merge_mod.F90
M src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
D src/drivers/nuopc/mediator/med_phases_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
M src/drivers/nuopc/mediator/med_phases_profile_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_fldList_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_grid_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
M src/externals/pio1/pio/pionfput_mod.F90.in
M src/externals/pio2/ctest/runcdash-nwscla-pgi.sh
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
D src/externals/pio2/src/clib/pio_varm.c
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/share/timing/GPTLprint_memusage.c
M src/share/timing/perf_mod.F90
M src/share/util/shr_wv_sat_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-07-2019
Tag: cime5.7.6
Answer Changes: None
Tests: scripts_regression_tests.py, hand testing of cesm cases
scripts_regression_tests.py with PIO_VERSION=2
code-checker, by-hand
Dependencies:
Brief Summary:
- case.cmpgen_namelists needs to be able to write to the case
- Improve errors messages coming from generic_xml.
- Update to the latest pio2 master from https://github.com/NCAR/ParallelIO
pio hash is 317963f
- Improve the logic of the continue run check.
- Merge latest maint-5.6 changes into master.
- Make sure optional arg exists before using.
- Improve error/exception handling throughout CIME.
- Update esmf in mapping master.
- Minor fix for e3sm_cime_mgmt.
- Fix issues found in cesm testing.
- Big improvement to robustness of CIME's XML handling.
- Correct timer merge issue.
- Fix PFS generate issue.
- Nuopc merge to master.
- Merge branch for acme split 2018-11-27.
- Resolve conflicts.
- Merge latest maint-5.6 changes into master.
- Fix new pylint errors.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
486c579 Merge pull request #2966 from jedwards4b/cmpgen_needs_write
ac2d671 Merge pull request #2964 from ESMCI/jgfouca/improve_xml_err_msgs
37d7afb Merge pull request #2955 from jedwards4b/jedwards/pio2-merge
18c822b Merge pull request #2956 from jedwards4b/improve_continue_run_check
59c158c Merge pull request #2958 from jedwards4b/jedwards/maint-5.6merge
3e2f45e Merge pull request #2950 from jedwards4b/docn_optional_arg_fix
2686d66 Merge pull request #2948 from ESMCI/jgfouca/improve_error_handling
a909466 Merge pull request #2941 from mnlevy1981/mlevy/update_esmf_in_mapping-master
ea8f9b8 Merge pull request #2946 from ESMCI/jgfouca/fix_e3sm_cime_mgmt
3c17731 Merge pull request #2944 from jedwards4b/cesmtestissues
d712b83 Merge pull request #2932 from ESMCI/jgfouca/xml_cache_upgrade
920ffca Merge pull request #2934 from jedwards4b/correct_timer_merge_issue
ba2f030 Merge pull request #2931 from jedwards4b/fixforpfsgenerate
25649e9 Merge pull request #2930 from jedwards4b/nuopc_merge_to_master
392eca0 Merge pull request #2926 from ESMCI/jgfouca/branch-for-acme-split-2018-11-27
56563f7 resolve conflicts
c81376f Merge branch 'maint-5.6' update master with maint-5.6
c0ff78e Merge pull request #2920 from ESMCI/jgfouca/fix_new_pylint_errs
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M config/xml_schemas/config_grids_v2.xsd
M doc/source/users_guide/testing.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case_diff
M scripts/Tools/cime_bisect
M scripts/Tools/simple_compare
M scripts/Tools/testreporter.py
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_build.py
M scripts/lib/CIME/XML/env_case.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_run.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/case_test.py
M scripts/lib/CIME/case/check_lockedfiles.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/locked_files.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/query_config
M scripts/testlist_cmeps.xml
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/CMake/FindpFUnit.cmake
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
M src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
M src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps/drof/nuopc/drof_comp_mod.F90
M src/components/data_comps/drof/nuopc/drof_shr_mod.F90
M src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
M src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
M src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
M src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
M src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
M src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
M src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
M src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
M src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
M src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/nuopc/cime_config/buildexe
M src/drivers/nuopc/cime_config/buildnml
M src/drivers/nuopc/cime_config/config_component.xml
M src/drivers/nuopc/cime_config/config_component_cesm.xml
M src/drivers/nuopc/cime_config/namelist_definition_drv.xml
M src/drivers/nuopc/cime_driver/ensemble_driver.F90
M src/drivers/nuopc/cime_driver/esm.F90
M src/drivers/nuopc/cime_flds/esmFlds.F90
M src/drivers/nuopc/mediator/med.F90
M src/drivers/nuopc/mediator/med_connectors_mod.F90
M src/drivers/nuopc/mediator/med_fraction_mod.F90
M src/drivers/nuopc/mediator/med_infodata_mod.F90
M src/drivers/nuopc/mediator/med_internalstate_mod.F90
M src/drivers/nuopc/mediator/med_io_mod.F90
M src/drivers/nuopc/mediator/med_map_mod.F90
M src/drivers/nuopc/mediator/med_merge_mod.F90
M src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
M src/drivers/nuopc/mediator/med_phases_history_mod.F90
M src/drivers/nuopc/mediator/med_phases_mod.F90
M src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_glc_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
M src/drivers/nuopc/mediator/med_phases_prep_wav_mod.F90
A src/drivers/nuopc/mediator/med_phases_profile_mod.F90
M src/drivers/nuopc/mediator/med_phases_restart_mod.F90
M src/drivers/nuopc/shr/med_constants_mod.F90
M src/drivers/nuopc/shr/seq_comm_mct.F90
D src/drivers/nuopc/shr/seq_timemgr_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_grid_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_time_mod.F90
M src/drivers/nuopc/shr/shr_nuopc_utils_mod.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/externals/pio2/.gitignore
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/Makefile.am
M src/externals/pio2/README.md
M src/externals/pio2/cmake/LibFind.cmake
M src/externals/pio2/cmake/LibMPI.cmake
D src/externals/pio2/cmake/mpiexec.nwsc
M src/externals/pio2/cmake/mpiexec.nwscla
M src/externals/pio2/cmake_config.h.in
M src/externals/pio2/configure.ac
D src/externals/pio2/ctest/CTestEnvironment-nwsc.cmake
M src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
D src/externals/pio2/ctest/runcdash-nwsc-gnu.sh
D src/externals/pio2/ctest/runcdash-nwsc-pgi.sh
A src/externals/pio2/ctest/runcdash-nwscla-gnu.sh
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
A src/externals/pio2/ctest/runcdash-nwscla-pgi.sh
D src/externals/pio2/ctest/runctest-nwsc.sh
A src/externals/pio2/examples/Makefile.am
A src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite.3
A src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite_Element.3
A src/externals/pio2/examples/c/Makefile.am
M src/externals/pio2/examples/c/darray_async.c
M src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/examplePio.c
A src/externals/pio2/examples/c/run_tests.sh
M src/externals/pio2/src/Makefile.am
M src/externals/pio2/src/clib/CMakeLists.txt
M src/externals/pio2/src/clib/Makefile.am
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/tests/Makefile.am
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/run_tests.sh
M src/externals/pio2/tests/cunit/test_async_multi2.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_darray_1d.c
M src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_async.c
A src/externals/pio2/tests/cunit/test_darray_fill.c
M src/externals/pio2/tests/cunit/test_darray_frame.c
A src/externals/pio2/tests/cunit/test_decomp_frame.c
M src/externals/pio2/tests/cunit/test_intercomm2.c
M src/externals/pio2/tests/general/CMakeLists.txt
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/performance/pioperformance.F90
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/timing/ChangeLog
M src/share/timing/Makefile
M src/share/timing/f_wrappers.c
M src/share/timing/gptl.c
M src/share/timing/gptl.h
M src/share/timing/gptl.inc
M src/share/timing/perf_mod.F90
M src/share/util/shr_file_mod.F90
M src/share/util/shr_log_mod.F90
M tools/configure
M tools/load_balancing_tool/load_balancing_submit.py
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
M tools/statistical_ensemble_test/addmetadata.sh
M tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSumPop.rst
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
D tools/statistical_ensemble_test/pyCECT/pyEnsSumPop_test.sh
M tools/statistical_ensemble_test/pyCECT/test_pop_CECT.sh
D tools/statistical_ensemble_test/pyCECT/test_pop_ensemble.sh
A tools/statistical_ensemble_test/pyCECT/test_pyEnsSumPop.sh
======================================================================
Originator: Bill Sacks
Date: 11-01-2018
Tag: cime5.7.5
Answer Changes: None
Tests: scripts_regression_tests, CTSM's aux_clm test suite
Dependencies:
Brief Summary: Miscellaneous minor bug fixes, including getting
mpi-serial working again
User interface changes: none
Originator: Chris Fischer
Date: 11-29-2018
Tag: cime_cesm2_1_rel_06
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix new pylint errors.
- Update addmetadata for POP-ECT tests.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5a86646 Merge pull request #2921 from jedwards4b/fixpylint3errors
98821ff Merge pull request #2919 from ESMCI/fischer/addmetadata
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/provenance.py
M scripts/lib/e3sm_cime_mgmt.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.pio
M tools/statistical_ensemble_test/addmetadata.sh
======================================================================
======================================================================
Originator: Chris Fischer
PR summary: git log --oneline --first-parent [previous_tag]..master
e882c1c06 Merge pull request #2897 from billsacks/fix_histutils_regex
fc14d5870 Merge pull request #2895 from billsacks/fix_lnd2glc_averaged_now
beff2289e Merge pull request #2892 from ESMCI/jhkennedy/mpi-serial-2890
44aa1f2c8 Merge pull request #2888 from ESMCI/jhkennedy/charge-account-2886
610ac40c5 Merge pull request #2889 from dabail10/pop_som_frc
a25d2b4c1 Merge pull request #2887 from billsacks/funit_fix_path
6c7981abd Merge pull request #2872 from billsacks/datm_wiso_typo
9087ed3ab Merge pull request #2883 from ESMCI/jgfouca/add_nuopc_e3sm_config
90e595c21 Merge pull request #2882 from jedwards4b/resolve_mpi_run_command
14bb217ec Merge pull request #2876 from ESMCI/jgfouca/fix_pet_no_batch
7720b1e83 Merge pull request #2877 from ESMCI/sarich/update-e3sm-config-driver
ddec7ebf0 Merge pull request #2854 from ESMCI/jhkennedy/machine-missing-2686
Modified files: git diff --name-status [previous_tag]
M ChangeLog
M config/e3sm/config_files.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/cime-config.rst
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/funit.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/get_tests.py
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/docn/tools/pop_som_frc/README
M src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl
M src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
A src/drivers/nuopc/cime_config/config_component_e3sm.xml
M src/drivers/nuopc/cime_config/namelist_definition_drv.xml
Originator: Chris Fischer
Date: 11-17-2018
Tag: cime_cesm2_1_rel_05
Answer Changes: None
Tests: ./create_test cime_developer on cheyenne
Dependencies:
Brief Summary:
- Do not include time of day in cpl auxiliary hist file names.
User interface changes:
- Changes names of cpl auxiliary history files.
PR summary: git log --oneline --first-parent [previous_tag]..master
b3fc9d6 Merge pull request #2914 from billsacks/auxhist_no_time
Modified files: git diff --name-status [previous_tag]
M src/drivers/mct/main/seq_hist_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-13-2018
Tag: cime_cesm2_1_rel_04
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Fix 2010 period for datm GSWP3v1.
- Update pyCECT to v3.0.8
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2e72d20 Merge pull request #2908 from ekluzek/fix2010datm
5f4a911 Merge pull request #2905 from ESMCI/fischer/pyCECT_v3.0.8
Modified files: git diff --name-status [previous_tag]
M src/components/data_comps/datm/cime_config/config_component.xml
M tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSumPop.rst
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
D tools/statistical_ensemble_test/pyCECT/pyEnsSumPop_test.sh
M tools/statistical_ensemble_test/pyCECT/test_pop_CECT.sh
D tools/statistical_ensemble_test/pyCECT/test_pop_ensemble.sh
A tools/statistical_ensemble_test/pyCECT/test_pyEnsSumPop.sh
======================================================================
Originator: Chris Fischer
Date: 10-22-2018
Tag: cime5.7.4
Answer Changes: I compsets (with datm) change answers due to #2828
(merged to master as #2847)
Tests: scripts_regression_tests, by hand
Dependencies:
Brief Summary:
- Remove all references to BATCHQUERY and BATCHSUBMIT.
- Bug fix.
- Update to CIME statistical ensemble test ensemble generation scripts.
- Fix debug builds for pio.
- Remove commented-out code
- Merge ACME split 2018-10-16
- Fix floating-point mpiprocs for Python 3.
- Fix floating-point mpiprocs for Python 3.
- Merge latest nuopc-cmeps development.
- Don't exceed maximum MPI tag value.
- maint-5.6 merge.
- Propagate logging settings to submitted jobs.
- mlchange: Give user guidance on what to do next.
- Dont hide ctest output in run_tests.py.
- Add FUNIT fake test.
- Improve continue run checks in case_submit.
- Some minor cleanup for nmlgen.py.
- ntasks_per_inst should never be <=0
- one more driver issue
- another driver issue
- fix e3sm cdash issue
- fix cdash issues
- Merge of the nuopc development branch.
- OS is not an environment variable on all systems.
- Add Daint and Euler machines.
- Merge acme split 2018-09-10.
- Fix ESMF library before version 8 build.
- Add /cluster/torque/bin to path on hobart.
User interface changes:
- Python scripts instead of shell scripts for ECT.
- Adds CIME_DRIVER env and config variable to set the default driver.
PR summary: git log --oneline --first-parent [previous_tag]..master
9355d97 Merge pull request #2868 from ESMCI/jgfouca/remove_old_batch_stuff
479c666 Merge pull request #2869 from ESMCI/jgfouca/f90_bug_fix
9839983 Merge pull request #2864 from allibco/master
5850391 Fix debug builds of pio
374dce4 Remove commented-out code
eaeff0c Merge pull request #2858 from ESMCI/jgfouca/branch-for-acme-split-2018-10-16
8d642a1 Merge pull request #2859 from ESMCI/fix_mpiprocs
00b2252 Merge pull request #2857 from jedwards4b/add_mpilibs_query_config
532d4ca Merge pull request #2848 from jedwards4b/nuopc-cmeps
490074f Merge pull request #2804 from ESMCI/jhkennedy/mpi_tags
00908db Merge pull request #2847 from jedwards4b/maint-5.6-merge
fb05358 Merge pull request #2833 from ESMCI/jgfouca/propagate_logging
6fb5659 Merge pull request #2829 from ESMCI/jgfouca/xmlchange_help_user
e002ac3 Merge pull request #2834 from ESMCI/jgfouca/dont_hide_ctest_output
3a5b47a Merge pull request #2826 from ESMCI/jgfouca/funit_fake_test
a4fb22e Merge pull request #2825 from ESMCI/jgfouca/improve_cont_run_guard
1df4dca Merge pull request #2830 from ESMCI/jgfouca/nmlgen_cleanup
9ca93ca ntasks_per_inst should never be <=0
4e621e6 one more driver issue
bdd0563 another driver issue
868c273 fix e3sm cdash issue
83ea95c fix cdash issues
6d383cc Merge pull request #2811 from jedwards4b/jedwards/merge_cmeps
3effd6a OS is not an environment variable on all systems
922f6e7 Merge pull request #2805 from beyerle/ethz
9de1492 Merge pull request #2800 from ESMCI/jgfouca/branch-for-acme-split-2018-09-10
eeae4e3 Merge pull request #2803 from ekluzek/fixesmflog
e075cac Merge pull request #2797 from billsacks/hobart_path
Modified files: git diff --name-status [previous_tag]
M .travis.yml
M ChangeLog
M config/cesm/config_files.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/case.build
M scripts/Tools/jenkins_generic_job
M scripts/Tools/xmlchange
A scripts/climate_reproducibility/README.md
A scripts/climate_reproducibility/requirements.txt
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/wget.py
A scripts/lib/CIME/SystemTests/funit.py
A scripts/lib/CIME/SystemTests/mvk.py
A scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
A scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/jenkins_generic_job.py
M scripts/query_config
A scripts/testlist_cmeps.xml
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
D src/components/data_comps/datm/datm_comp_mod.F90
D src/components/data_comps/datm/datm_shr_mod.F90
A src/components/data_comps/datm/mct/datm_comp_mod.F90
A src/components/data_comps/datm/mct/datm_shr_mod.F90
A src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
A src/components/data_comps/datm/nuopc/datm_comp_mod.F90
A src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dice/cime_config/config_archive.xml
M src/components/data_comps/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps/dice/dice_comp_mod.F90
D src/components/data_comps/dice/dice_shr_mod.F90
A src/components/data_comps/dice/mct/dice_comp_mod.F90
A src/components/data_comps/dice/mct/dice_flux_atmice_mod.F90
A src/components/data_comps/dice/mct/dice_shr_mod.F90
A src/components/data_comps/dice/nuopc/dice_comp_mod.F90
A src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90
A src/components/data_comps/dice/nuopc/dice_shr_mod.F90
A src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/cime_config/buildnml
D src/components/data_comps/dlnd/dlnd_comp_mod.F90
D src/components/data_comps/dlnd/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
A src/components/data_comps/dlnd/mct/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
A src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
A src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
D src/components/data_comps/docn/docn_comp_mod.F90
D src/components/data_comps/docn/docn_shr_mod.F90
A src/components/data_comps/docn/mct/docn_comp_mod.F90
A src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/docn/mct/ocn_comp_mct.F90
A src/components/data_comps/docn/nuopc/docn_comp_mod.F90
A src/components/data_comps/docn/nuopc/docn_shr_mod.F90
A src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90
M src/components/data_comps/drof/cime_config/buildnml
D src/components/data_comps/drof/drof_comp_mod.F90
D src/components/data_comps/drof/drof_shr_mod.F90
A src/components/data_comps/drof/mct/drof_comp_mod.F90
A src/components/data_comps/drof/mct/drof_shr_mod.F90
A src/components/data_comps/drof/nuopc/drof_comp_mod.F90
A src/components/data_comps/drof/nuopc/drof_shr_mod.F90
A src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90
A src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90
M src/components/data_comps/dwav/cime_config/buildnml
D src/components/data_comps/dwav/dwav_comp_mod.F90
D src/components/data_comps/dwav/dwav_shr_mod.F90
A src/components/data_comps/dwav/mct/dwav_comp_mod.F90
A src/components/data_comps/dwav/mct/dwav_shr_mod.F90
A src/components/data_comps/dwav/nuopc/dwav_comp_mod.F90
A src/components/data_comps/dwav/nuopc/dwav_shr_mod.F90
A src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90
D src/components/stub_comps/satm/cpl/atm_comp_mct.F90
A src/components/stub_comps/satm/mct/atm_comp_mct.F90
A src/components/stub_comps/satm/nuopc/atm_comp_nuopc.F90
D src/components/stub_comps/sesp/cpl/esp_comp_mct.F90
A src/components/stub_comps/sesp/mct/esp_comp_mct.F90
D src/components/stub_comps/sglc/cpl/glc_comp_mct.F90
A src/components/stub_comps/sglc/mct/glc_comp_mct.F90
A src/components/stub_comps/sglc/nuopc/glc_comp_nuopc.F90
D src/components/stub_comps/sice/cpl/ice_comp_mct.F90
A src/components/stub_comps/sice/mct/ice_comp_mct.F90
A src/components/stub_comps/sice/nuopc/ice_comp_nuopc.F90
D src/components/stub_comps/slnd/cpl/lnd_comp_mct.F90
A src/components/stub_comps/slnd/mct/lnd_comp_mct.F90
A src/components/stub_comps/slnd/nuopc/lnd_comp_nuopc.F90
D src/components/stub_comps/socn/cpl/ocn_comp_mct.F90
A src/components/stub_comps/socn/mct/ocn_comp_mct.F90
A src/components/stub_comps/socn/nuopc/ocn_comp_nuopc.F90
D src/components/stub_comps/srof/cpl/rof_comp_mct.F90
A src/components/stub_comps/srof/mct/rof_comp_mct.F90
A src/components/stub_comps/srof/nuopc/rof_comp_nuopc.F90
D src/components/stub_comps/swav/cpl/wav_comp_mct.F90
A src/components/stub_comps/swav/mct/wav_comp_mct.F90
A src/components/stub_comps/swav/nuopc/wav_comp_nuopc.F90
D src/components/xcpl_comps/xatm/cpl/atm_comp_mct.F90
A src/components/xcpl_comps/xatm/mct/atm_comp_mct.F90
A src/components/xcpl_comps/xatm/nuopc/atm_comp_nuopc.F90
D src/components/xcpl_comps/xglc/cpl/glc_comp_mct.F90
A src/components/xcpl_comps/xglc/mct/glc_comp_mct.F90
A src/components/xcpl_comps/xglc/nuopc/glc_comp_nuopc.F90
D src/components/xcpl_comps/xice/cpl/ice_comp_mct.F90
A src/components/xcpl_comps/xice/mct/ice_comp_mct.F90
A src/components/xcpl_comps/xice/nuopc/ice_comp_nuopc.F90
D src/components/xcpl_comps/xlnd/cpl/lnd_comp_mct.F90
A src/components/xcpl_comps/xlnd/mct/lnd_comp_mct.F90
A src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
D src/components/xcpl_comps/xocn/cpl/ocn_comp_mct.F90
A src/components/xcpl_comps/xocn/mct/ocn_comp_mct.F90
A src/components/xcpl_comps/xocn/nuopc/ocn_comp_nuopc.F90
D src/components/xcpl_comps/xrof/cpl/rof_comp_mct.F90
A src/components/xcpl_comps/xrof/mct/rof_comp_mct.F90
A src/components/xcpl_comps/xrof/nuopc/rof_comp_nuopc.F90
D src/components/xcpl_comps/xshare/dead_data_mod.F90
D src/components/xcpl_comps/xshare/dead_mct_mod.F90
D src/components/xcpl_comps/xshare/dead_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_data_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_mct_mod.F90
A src/components/xcpl_comps/xshare/mct/dead_mod.F90
A src/components/xcpl_comps/xshare/nuopc/dead_nuopc_mod.F90
D src/components/xcpl_comps/xwav/cpl/wav_comp_mct.F90
A src/components/xcpl_comps/xwav/mct/wav_comp_mct.F90
A src/components/xcpl_comps/xwav/nuopc/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/prep_ocn_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
A src/drivers/moab/cime_config/buildexe
A src/drivers/moab/cime_config/buildnml
A src/drivers/moab/cime_config/config_archive.xml
A src/drivers/moab/cime_config/config_component.xml
A src/drivers/moab/cime_config/config_component_cesm.xml
A src/drivers/moab/cime_config/config_component_e3sm.xml
A src/drivers/moab/cime_config/config_compsets.xml
A src/drivers/moab/cime_config/config_pes.xml
A src/drivers/moab/cime_config/namelist_definition_drv.xml
A src/drivers/moab/cime_config/namelist_definition_drv_flds.xml
A src/drivers/moab/cime_config/namelist_definition_modelio.xml
A src/drivers/moab/cime_config/user_nl_cpl
A src/drivers/moab/main/CMakeLists.txt
A src/drivers/moab/main/cime_comp_mod.F90
A src/drivers/moab/main/cime_driver.F90
A src/drivers/moab/main/component_mod.F90
A src/drivers/moab/main/component_type_mod.F90
A src/drivers/moab/main/cplcomp_exchange_mod.F90
A src/drivers/moab/main/map_glc2lnd_mod.F90
A src/drivers/moab/main/map_lnd2glc_mod.F90
A src/drivers/moab/main/map_lnd2rof_irrig_mod.F90
A src/drivers/moab/main/mrg_mod.F90
A src/drivers/moab/main/prep_aoflux_mod.F90
A src/drivers/moab/main/prep_atm_mod.F90
A src/drivers/moab/main/prep_glc_mod.F90
A src/drivers/moab/main/prep_ice_mod.F90
A src/drivers/moab/main/prep_lnd_mod.F90
A src/drivers/moab/main/prep_ocn_mod.F90
A src/drivers/moab/main/prep_rof_mod.F90
A src/drivers/moab/main/prep_wav_mod.F90
A src/drivers/moab/main/seq_diag_mct.F90
A src/drivers/moab/main/seq_domain_mct.F90
A src/drivers/moab/main/seq_flux_mct.F90
A src/drivers/moab/main/seq_frac_mct.F90
A src/drivers/moab/main/seq_hist_mod.F90
A src/drivers/moab/main/seq_io_mod.F90
A src/drivers/moab/main/seq_map_mod.F90
A src/drivers/moab/main/seq_map_type_mod.F90
A src/drivers/moab/main/seq_rest_mod.F90
A src/drivers/moab/main/t_driver_timers_mod.F90
A src/drivers/moab/shr/CMakeLists.txt
A src/drivers/moab/shr/glc_elevclass_mod.F90
A src/drivers/moab/shr/seq_cdata_mod.F90
A src/drivers/moab/shr/seq_comm_mct.F90
A src/drivers/moab/shr/seq_drydep_mod.F90
A src/drivers/moab/shr/seq_flds_mod.F90
A src/drivers/moab/shr/seq_infodata_mod.F90
A src/drivers/moab/shr/seq_io_read_mod.F90
A src/drivers/moab/shr/seq_timemgr_mod.F90
A src/drivers/moab/shr/shr_carma_mod.F90
A src/drivers/moab/shr/shr_expr_parser_mod.F90
A src/drivers/moab/shr/shr_fire_emis_mod.F90
A src/drivers/moab/shr/shr_megan_mod.F90
A src/drivers/moab/shr/shr_ndep_mod.F90
A src/drivers/nuopc/cime_config/buildexe
A src/drivers/nuopc/cime_config/buildnml
A src/drivers/nuopc/cime_config/config_archive.xml
A src/drivers/nuopc/cime_config/config_component.xml
A src/drivers/nuopc/cime_config/config_component_cesm.xml
A src/drivers/nuopc/cime_config/config_compsets.xml
A src/drivers/nuopc/cime_config/config_pes.xml
A src/drivers/nuopc/cime_config/fd.yaml
A src/drivers/nuopc/cime_config/namelist_definition_drv.xml
A src/drivers/nuopc/cime_config/namelist_definition_drv_flds.xml
A src/drivers/nuopc/cime_config/namelist_definition_modelio.xml
A src/drivers/nuopc/cime_config/testdefs/testlist_drv.xml
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/include_user_mods
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/glcnec10/shell_commands
A src/drivers/nuopc/cime_config/testdefs/testmods_dirs/drv/som/shell_commands
A src/drivers/nuopc/cime_config/user_nl_cpl
A src/drivers/nuopc/cime_driver/ensemble_driver.F90
A src/drivers/nuopc/cime_driver/esm.F90
A src/drivers/nuopc/cime_driver/esmApp.F90
A src/drivers/nuopc/cime_driver/t_driver_timers_mod.F90
A src/drivers/nuopc/cime_driver/util.F90
A src/drivers/nuopc/cime_flds/esmDict.F90
A src/drivers/nuopc/cime_flds/esmFlds.F90
A src/drivers/nuopc/cime_flds/glc_elevclass_mod.F90
A src/drivers/nuopc/cime_flds/seq_drydep_mod.F90
A src/drivers/nuopc/cime_flds/shr_carma_mod.F90
A src/drivers/nuopc/cime_flds/shr_fire_emis_mod.F90
A src/drivers/nuopc/cime_flds/shr_flds_mod.F90
A src/drivers/nuopc/cime_flds/shr_megan_mod.F90
A src/drivers/nuopc/cime_flds/shr_ndep_mod.F90
A src/drivers/nuopc/mediator/ESMFConvenienceMacros.h
A src/drivers/nuopc/mediator/ESMFVersionDefine.h
A src/drivers/nuopc/mediator/med.F90
A src/drivers/nuopc/mediator/med_connectors_mod.F90
A src/drivers/nuopc/mediator/med_fraction_mod.F90
A src/drivers/nuopc/mediator/med_infodata_mod.F90
A src/drivers/nuopc/mediator/med_internalstate_mod.F90
A src/drivers/nuopc/mediator/med_io_mod.F90
A src/drivers/nuopc/mediator/med_map_mod.F90
A src/drivers/nuopc/mediator/med_merge_mod.F90
A src/drivers/nuopc/mediator/med_phases_aofluxes_mod.F90
A src/drivers/nuopc/mediator/med_phases_history_mod.F90
A src/drivers/nuopc/mediator/med_phases_mod.F90
A src/drivers/nuopc/mediator/med_phases_ocnalb_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_atm_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_glc_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_ice_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_lnd_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_ocn_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_rof_mod.F90
A src/drivers/nuopc/mediator/med_phases_prep_wav_mod.F90
A src/drivers/nuopc/mediator/med_phases_restart_mod.F90
A src/drivers/nuopc/shr/CMakeLists.txt
A src/drivers/nuopc/shr/med_constants_mod.F90
A src/drivers/nuopc/shr/seq_comm_mct.F90
A src/drivers/nuopc/shr/seq_timemgr_mod.F90
A src/drivers/nuopc/shr/shr_expr_parser_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_fldList_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_grid_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_methods_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_scalars_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_time_mod.F90
A src/drivers/nuopc/shr/shr_nuopc_utils_mod.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/externals/pio2/cmake/FindNetCDF.cmake
M src/share/streams/shr_dmodel_mod.F90
M src/share/streams/shr_stream_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_file_mod.F90
M src/share/util/shr_flds_mod.F90
M src/share/util/shr_frz_mod.F90.in
M src/share/util/shr_taskmap_mod.F90
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.py
D tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.py
D tools/statistical_ensemble_test/single_run.sh
Originator: Chris Fischer
Date: 11-5-2018
Tag: cime_cesm2_1_rel_03
Answer Changes: None
Tests: code_checker, stand-alone tests, scripts_regression_tests
Dependencies:
Brief Summary:
- Add Total Time parsing for timeseries and xconform to archive_metadata
- Fine tuning for CMIP6 cases in archive_metadata.
- CESM-CECT update.
- Python3 compatibility update for archive_metadata.
- Remove reference to deleted testmods directories.
- Compute tasks_per_node via floor division.
- Response to review comments of pr 2844 and remove user-grid option.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c515c37 Merge pull request #2900 from bertinia/maint-5.6_archive_metadata
47f3970 Merge pull request #2884 from bertinia/maint-5.6_archive_metadata
3ad6a6e Merge pull request #2866 from jedwards4b/set_update
a2b6885 Merge pull request #2865 from bertinia/maint-5.6_archive_metadata
b56664c Merge pull request #2862 from billsacks/doc_testmods
ad361d2 Merge pull request #2860 from jedwards4b/py3fix
7e82e9b Merge pull request #2853 from jedwards4b/cleanuppr
Modified files: git diff --name-status [previous_tag]
M doc/source/users_guide/testing.rst
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/XML/env_mach_pes.py
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.py
D tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.py
D tools/statistical_ensemble_test/single_run.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-12-2018
Tag: cime_cesm2_1_rel_02
Answer Changes: None
Tests: Z_FullSystemTest, scripts_regression_tests, hand tests
Dependencies:
Brief Summary:
- Add a default value of idmap_ignore for certain mapping files.
- Improve clean function.
- Add ability for testfile to contain comments.
- Clean and alphabetize (by MACH name) the config/cesm/machines/*.xml files.
- Improve case clone functionality.
- Improve error message for issues in user_nl_* namelist files.
- Write cpl.hr2x files at ENDOFRUN when forecast is < 24 hours.
- Backporting PR #2833(Propagate logging settings to submitted jobs) to maint-5.6 branch.
- Remove overzelous debug code.
- Change default for flux_convergence for all but 1 degree case.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
fd439ba Merge pull request #2845 from jedwards4b/improve_idmap_test
be6c214 Merge pull request #2844 from jedwards4b/run_tests_clean
c2cab2f Merge pull request #2838 from jedwards4b/testfile_comments
d68fa9c Merge pull request #2849 from jedwards4b/cleanup_xml
cb81444 Merge pull request #2843 from jedwards4b/clone_modified_Tools
f3f5f69 Merge pull request #2840 from jedwards4b/user_nl_error_msg
61132ee Merge pull request #2832 from kdraeder/hr2x_at_endofrun
d3457ec Merge pull request #2842 from jedwards4b/propagate_logging
ad9c0f5 Merge pull request #2839 from jedwards4b/remove_debug_code
6a7d374 Merge pull request #2837 from jedwards4b/tuning1.9
Modified files: git diff --name-status [previous_tag]
M .travis.yml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/nmlgen.py
M scripts/tests/scripts_regression_tests.py
M src/CMake/FindpFUnit.cmake
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/share/streams/shr_stream_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-8-2018
Tag: cime_cesm2_1_rel_01
Answer Changes: None
Tests: scripts_regression_test
Dependencies:
Brief Summary:
- Update presaero and CO2 datasets for datm7 to new CMIP6 version.
- Better format for seq_flds_YYY_{fluxes,states} log messages.
- Attach the instance number to 'cpl' in cpl history file names.
- Fix inputdata issue for multi_instance cases.
User interface changes:
- Added clim_2010 option for DATM_PRESAERO
Added 20tr.latbnd option for DATM_CO2_TSERIES
GSWP3v1 and CRUNCEPv7 forcing sets appropriate years for compsets starting with 2010
PR summary: git log --oneline --first-parent [previous_tag]..master
88d9297 Merge pull request #2828 from ekluzek/newpresaero
6568ded Merge pull request #2824 from kdraeder/kdr_seq_flds_log_msgs
fcf60c8 Merge pull request #2782 from kdraeder/kdr_fix_cpl_hist_names
6511798 Merge pull request #2823 from jedwards4b/multi_inst_check_input
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/nmlgen.py
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-2-2018
Tag: cime_cesm2_0_rel_06
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Archive_metadata updates for CMIP6 experiments.
- OS is not generic env var.
- New machines at ETH and CSCS.
- Update ESMF library on cheyenne.
- Fix documentation for histaux_r2x namelist variable.
- Dont allow zero ntasks nthrds.
- Add lapack and blas libraries to pgi compile on cheyenne.
- Updates for compatibility with XML to html tools.
- Remove additional rad->deg conversion to radians when creating ocean
domain files.
- ESMF logging fix.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
12e1c4d41 (HEAD -> maint-5.6, origin/maint-5.6) Merge pull request #2815 from bertinia/maint-5.6_archive_metadata
767511a79 OS is not generic env var
bec49f0c2 Merge pull request #2807 from beyerle/euler_daint
9e74b8ab3 Merge pull request #2806 from ESMCI/fischer/ESMF_710r
0f20ab46e Merge pull request #2774 from billsacks/fix_histaux_r2x_docs
1c10e58e8 Merge pull request #2768 from jedwards4b/dont_allow_zero_ntasks_nthrds
6a1069ce3 Merge pull request #2753 from jedwards4b/pgi_lapack
5a0a56721 Merge pull request #2742 from bertinia/maint-5.6-component-return-values
cbf8f2216 Merge pull request #2736 from jtruesdal/domainfix
2e34a0305 Merge pull request #2733 from gold2718/esmf_log_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/Tools/archive_metadata
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/utils.py
M src/components/data_comps/docn/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-24-2018
Tag: cime_cesm2_0_rel_05
Date: 8-30-2018
Tag: cime5.7.3
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix pruning of test_hists with refcase in their name.
- Do not report BFAIL for a test that is missing a file.
- Fix use of test_utils.
- Rewrite array code as loops to appease NAG.
- Make a new grid to ensure ADWAV works with f19_f19.
- Add options to cs.status to allow just summarizing failures.
- Fix DAE test for scripts_regression_tests.
User interface changes:
- Adds some optional arguments to cs.status, but no other changes.
PR summary: git log --oneline --first-parent [previous_tag]..master
33b347b Merge pull request #2794 from billsacks/fix_eri
442c6a6 Merge pull request #2789 from billsacks/no_bfail_if_no_original
bc8166b Merge pull request #2785 from billsacks/fix_create_test
04075df Merge pull request #2784 from gold2718/fix_mct_mod
1a2724e Merge pull request #2780 from ESMCI/jgfouca/fix_e3sm_adwav_test
4ec710a Merge pull request #2775 from billsacks/cs_status_fails_only
9b09698 Merge pull request #2777 from gold2718/fix_dae
Modified files: git diff --name-status [previous_tag]
M config/e3sm/config_grids.xml
D scripts/Tools/cimeteststatus
M scripts/Tools/cs.status
M scripts/create_test
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/SystemTests/dae.py
A scripts/lib/CIME/cs_status.py
M scripts/lib/CIME/cs_status_creator.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_status.py
A scripts/lib/CIME/tests/test_cs_status.py
M scripts/lib/cs.status.template
M scripts/lib/get_tests.py
A scripts/lib/six_additions.py
M src/share/util/mct_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-23-2018
Tag: cime5.7.2
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Add a comment to special interfaces.
- Merge maint-5.6 branch.
- Update DWAV model to be compatible with the new post-data-assimilation functionality.
- Propagate --project value to CHARGE_ACCOUNT.
- Re-implementation of pause/resume with a few features.
- Allow TestStatus file to be copied into baselines.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c4f0206 add a comment to special interfaces
b4bb592 Merge branch 'mymaint-5.6'
aa3c8db Merge pull request #2765 from gold2718/fix_dwav
b1bc5d6 Merge pull request #2763 from ESMCI/sarich/fix-charge-account
ca3ac20 Merge pull request #2751 from gold2718/new_resume_method
2f57f3e Merge pull request #2761 from ESMCI/jgfouca/generate_test_status
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/desp/mct/esp_comp_mct.F90
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/dwav/mct/wav_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/component_type_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/CMakeLists.txt
M src/drivers/mct/shr/seq_cdata_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
A src/drivers/mct/shr/seq_pauseresume_mod.F90
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-20-2018
Tag: cime5.7.1
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- DAE test improve.
- Extract code for creating a test suite-specific cs.status script.
- Disable problematic task-node output by default.
- Add BFAIL in more contexts when doing baseline comparisons.
- Do a better job of handling exceptions in sub-phases of run.
- Merge acme split 2018-08-08.
- Use information from env_archive.xml to determine history files for baselines and compares.
- For inputdata servers make it so key members are always defined.
- Add exception for archive_metadata.
- Fix merge issue
- Merge maint-5.6 to master
- Need to specify compiler to mpilibs.
- Use RawConfigParser instead of ConfigParser.
- Fix pylint error.
- Improve compiler not support msg.
- Couple minor fixes to e3sm cime mgmt tools.
- Turn off auto conflict resolution by default for e3sm cime mgmt tools.
- Rework machine overrides in config_compilers.
- Merge acme split 2018-07-11.
- Merge acme split 2018-07-06.
- More fixes and tests for V2 compiler macro system.
- Automatically handle easy conflicts in e3sm cime management.
- Add return_values to machines.py for XML to HTML machine script.
- Needed a function to get all compset longnames from config_compsets.xml.
- Fix for passing run arguments in LSF.
- Use ConfigParser rather than SafeConfigParser.
- Merge acme split 2018-06-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
84d14aeac Merge pull request #2759 from gold2718/dae_test_improve
f1349f993 Merge pull request #2755 from billsacks/custom_cs_status
86c25a010 Merge pull request #2750 from ESMCI/jgfouca/fix_fortran_unit_tests
9d352467d Merge pull request #2744 from ESMCI/jgfouca/more_bfails
955ecba43 Merge pull request #2745 from ESMCI/jgfouca/fix_exc_handling_systest
07d476de1 (tag: to-acme-2018-08-09) Merge pull request #2743 from ESMCI/jgfouca/branch-for-acme-split-2018-08-08
4723dd25f Merge pull request #2728 from jedwards4b/hist_utils_use_archive_xml
4da37d863 Merge pull request #2740 from ESMCI/jgfouca/fixes_for_servers
dfbbe0827 add exception for archive_metadata :-(
4f41034b0 fix merge issue
194640859 merge maint-5.6 to master
b0dc6ee0f Merge pull request #2723 from jedwards4b/multi_mpilibs_fix
9fd318849 Merge pull request #2722 from ESMCI/mfdeakin-sandia/submit/ConfigParser
ea7d206fe Merge pull request #2721 from ESMCI/jgfouca/fix_py3_pylint_errs
23f27bafa Merge pull request #2720 from ESMCI/jgfouca/improve_msg
1aa9cbf6e Couple minor fixes to e3sm cime mgmt tools
5885138c2 (tag: to-acme-2018-07-12) Merge pull request #2712 from ESMCI/jgfouca/turn_off_autoconf_by_de
869115d64 Merge pull request #2710 from ESMCI/quantheory/redo_machine_specific_compilers
df89bcec5 Merge pull request #2711 from ESMCI/jgfouca/branch-for-acme-split-2018-07-11
d52719d86 (tag: to-acme-2018-07-06) Merge pull request #2704 from ESMCI/jgfouca/branch-for-acme-split-2018-07-06
516831614 Merge pull request #2703 from ESMCI/jgfouca/compilers_fix
290b78033 Merge pull request #2696 from ESMCI/jgfouca/e3sm_mgmt_autohandle_ez_confs
25630d675 (tag: to-acme-2018-06-28) Merge pull request #2694 from bertinia/maint-5.6-machines
1f4215d1f Merge pull request #2691 from jedwards4b/compsets
fc534795f Merge pull request #2692 from ESMCI/mfdeakin-sandia/lsf-fix
b76de49d5 Merge pull request #2680 from ESMCI/mfdeakin-sandia/case_submit/config_no_interpolate
4948d663b Merge pull request #2689 from ESMCI/jgfouca/branch-for-acme-split-2018-06-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
A config/e3sm/machines/syslog.summit
M config/e3sm/machines/template.st_archive
M config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
M config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
M config/e3sm/tests.py
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/create-a-case.rst
M scripts/Tools/Makefile
A scripts/Tools/archive_metadata
M scripts/Tools/case.submit
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/Tools/jenkins_generic_job
M scripts/Tools/preview_run
M scripts/Tools/testreporter.py
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/BuildTools/possiblevalues.py
M scripts/lib/CIME/BuildTools/valuesetting.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/rep.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/compare_test_results.py
A scripts/lib/CIME/cs_status_creator.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
M scripts/lib/CIME/tests/test_case_fake.py
M scripts/lib/CIME/tests/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/dwav/mct/wav_comp_mct.F90
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_map_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_reprosum_mod.F90
A src/share/util/shr_taskmap_mod.F90
======================================================================
======================================================================
Originator:Chris Fischer
Date: 6-25-2018
Tag: cime5.7.0
Answer Changes: None
Tests: scripts_regression_tests
xmllint of env_mach_specific.xml
Dependencies:
Brief Summary:
- Merge in changes from maint-5.6(CESM release) branch.
- Fix issue with e3sm mali file archiving.
- Config compiler parser fix.
- XSD definitions did not match implementation.
- config_compilers.xml updates from e3sm.
- Fix minor issue with recent non-local PR.
- Allow users to go up through the setup phase on non-local machines.
- e3sm st_archive fix for ESP.
- Import fixes and updates from e3sm.
- Update e3sm to compilers v2.
- Maint 5.6 merge to master.
- Add the allow_error flag to schema.
- Fix weird whitespace.
- Improve robustness of compare-two tests.
- Fix find_circular_dependency.py.
- Maint 5.6 merge to master.
- Jgfouca/branch for acme split 2018 05 18.
- Add commas to output using --value.
- Multisubmit tests were not resubmitting.
- New script to add additional metadata for stat ensemble test.
- Fix formatting issue.
- Update iyear for 2000 runs.
- Merge branch 'master' of github.com:ESMCI/cime.
- Add grid neede for cime standalone testing.
- Updated the wrappers for the ESMF mapping tools to work on NCAR machines.
User interface changes:
- New --non-local flag for create_test/create_newcase.
PR summary: git log --oneline --first-parent [previous_tag]..master
6ceaf73 Merge pull request #2690 from ESMCI/maint-5.6
aeaac31 Merge pull request #2683 from jedwards4b/e3sm_st_archive_fix
b78593b Merge pull request #2671 from jedwards4b/config_compiler_test
58a5e43 Merge pull request #2670 from ESMCI/jgfouca/fix_directive_selection
95fe393 config_compilers.xml updates from e3sm
4888867 Fix minor issue with recent non-local PR
43a6812 Merge pull request #2665 from ESMCI/jgfouca/allow_non_local_machine_setup
8a2f9d5 Merge pull request #2663 from jedwards4b/e3sm_st_archive
22ab62b Merge pull request #2661 from ESMCI/jgfouca/fix_e3sm_compilers
18f23fc Merge pull request #2655 from ESMCI/jgfouca/update_e3sm_to_compilersv2
c1eff51 Merge pull request #2657 from ESMCI/maint-5.6
6b01d3b Merge pull request #2654 from jedwards4b/validate_allow_error
8e4054b Fix weird whitespace
ed9d13b Merge pull request #2635 from ESMCI/jgfouca/preemptively_add_compare_pend
3d65363 Merge pull request #2630 from gold2718/fix_circular
5dd50b1 Merge pull request #2627 from ESMCI/maint-5.6
6933518 Merge pull request #2613 from ESMCI/jgfouca/branch-for-acme-split-2018-05-18
2e997e0 Merge pull request #2607 from jedwards4b/xmlquery_multivalue
f1d501f Merge pull request #2600 from jedwards4b/test_issues
5c256ec Merge pull request #2582 from jedwards4b/stattest_add_metadata
8ce38a4 fix formatting issue
6c53cfc Merge pull request #2594 from jedwards4b/orb_iyear_2000
c04da3c Merge branch 'master' of github.com:ESMCI/cime
166a40c these grids are needed for cime standalone testing
7cef855 Merge pull request #2589 from mnlevy1981/mlevy/mapping_on_geyser
Modified files: git diff --name-status [previous_tag]
M .gitignore
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/testlist.xsd
M doc/Makefile
M doc/README
D doc/source/README
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/cime-change-namelist.rst
A doc/source/users_guide/cime-dir.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/machine.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/users_guide/timers.rst
M doc/source/users_guide/troubleshooting.rst
M doc/source/users_guide/unit_testing.rst
D doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
D doc/source/users_guide/use_cases/cesm-nml.rst
D doc/source/users_guide/use_cases/datamod-nml.rst
D doc/source/users_guide/use_cases/driver-nml.rst
D doc/source/users_guide/use_cases/namelist-gen.rst
D doc/source/users_guide/use_cases/use-cases.rst
A doc/source/users_guide/workflows.rst
M doc/tools_autodoc.cfg
M doc/tools_autodoc.py
M scripts/Tools/Makefile
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/BuildTools/possiblevalues.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/manage_pes
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/mct/atm_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/externals/pio1/pio/box_rearrange.F90.in
M src/externals/pio1/pio/pio_support.F90
M src/externals/pio1/pio/piolib_mod.F90
M tools/mapping/check_maps/README
M tools/mapping/check_maps/check_map.sh
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/src/.gitignore
M tools/mapping/gen_domain_files/src/Makefile
A tools/mapping/gen_mapping_files/.gitignore
M tools/mapping/gen_mapping_files/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
D tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/regridbatch.yellowstone.sh
M tools/mapping/gen_mapping_files/gen_cesm_maps.sh
M tools/mapping/gen_mapping_files/runoff_to_ocn/.gitignore
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
M tools/mapping/map_field/.gitignore
M tools/mapping/map_field/README
M tools/mapping/map_field/src/Makefile
M tools/statistical_ensemble_test/README
A tools/statistical_ensemble_test/addmetadata.sh
A tools/statistical_ensemble_test/ensemble.py
A tools/statistical_ensemble_test/pyCECT/.gitignore
A tools/statistical_ensemble_test/pyCECT/EET.py
M tools/statistical_ensemble_test/pyCECT/LICENSE.txt
M tools/statistical_ensemble_test/pyCECT/README_pyCECT.rst
M tools/statistical_ensemble_test/pyCECT/README_pyEnsSum.rst
M tools/statistical_ensemble_test/pyCECT/ens_excluded_varlist.json
A tools/statistical_ensemble_test/pyCECT/ens_sub.pbs
M tools/statistical_ensemble_test/pyCECT/ens_sub.sh
A tools/statistical_ensemble_test/pyCECT/exclude_empty.json
A tools/statistical_ensemble_test/pyCECT/included_varlist.json
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
A tools/statistical_ensemble_test/single_run.py
M tools/utils/find_circular_dependency.py
======================================================================
=======
Originator: Chris Fischer
Date: 7-13-2018
Tag: cime5.6.10
Answer Changes: None
Tests: hand test
code_checker on create_newcase; manually checked create_newcase --help
ERS_Ln9.f19_g17.X.hobart_intel , ERS_Ln9.f19_g17.X.hobart_gnu,
ERS_Ln9.f19_g17.X.hobart_nag
Dependencies:
Brief Summary:
- Add scripts/Tools/archive_metadata to CIME for use in CESM cases only.
- Change DIN_LOC_ROOT_CLMFORC for new glade setup on cheyenne.
- Make docs more consistent.
- cprnc compiler updates for hobart.
User interface changes:
- archive_metadata --help stand_alone script.
PR summary: git log --oneline --first-parent [previous_tag]..master
9f4377c Merge pull request #2715 from bertinia/maint-5.6_archive_metadata
ef2f2e4 Merge pull request #2714 from ekluzek/newgladedinlocclmfrc
154b475 Merge pull request #2693 from billsacks/make_docs_more_consistent
631869c Merge pull request #2709 from ESMCI/fischer/hobart_cprnc
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M doc/source/users_guide/create-a-case.rst
A scripts/Tools/archive_metadata
M scripts/create_newcase
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/utils.py
======================================================================
======================================================================
Originator: Chris Fiscehr
Date: 7-5-2018
Tag: cime5.6.9
Answer Changes: None
Tests: prealpha on edison, cori-haswell, cori-knl
scripts_regression_tests, ect-uf on bluewaters
Dependencies:
Brief Summary:
- Maint-5.6 nersc update.
- Maint-5.6 hobart update.
- Fix issue with rebuilding csm_share.
- Bluewaters update.
- Edit and cleanup parts of CCS users guide.
- Change -v to --env for theta.
- Fix unittest.
- Tryagain with tput code.
- ww3 data staging fix.
- Fix refcase logiv.
- Add and clarify pieces that describe adding a test to the prebeta testing.
- Archive test refinement.
User interface changes:
- --test becomes --test-all and --test-case is added
PR summary: git log --oneline --first-parent [previous_tag]..master
3ee8b07 Merge pull request #2697 from jedwards4b/maint-5.6-nersc-update
b76c449 Merge pull request #2701 from jedwards4b/maint-5.6-hobart-update
34677a4 Merge pull request #2684 from jedwards4b/improve_shared_build_performance
57c8924 Merge pull request #2675 from jedwards4b/bluewaters_update
3a5281d Merge pull request #2662 from ESMCI/rljacob/doc/ug1-read
f8cc2a7 Merge pull request #2666 from jedwards4b/theta_fix
2e9973f fix unittest
49f59b6 tryagain with tput code
0819198 Merge branch 'ww3_data_staging' into maint-5.6
7478f2f Merge branch 'fix_refcase_logic' into maint-5.6
cd64838 Merge pull request #2647 from ESMCI/fischer/augment_testing_doc
3016427 Merge pull request #2656 from jedwards4b/archive_test_refinement
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/testlist.xsd
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/cime-change-namelist.rst
A doc/source/users_guide/cime-dir.rst
M doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/testing.rst
M scripts/Tools/Makefile
M scripts/Tools/preview_run
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-14-2018
Tag: cime5.6.7
Answer Changes: None
Tests: scripts_regression_tests, xmlquery --listall --file env_run.xml
Dependencies:
Brief Summary:
- xmlquery fix.
- Fixes an issue when selecting mpilib on cheyenne.
- Fixed some print format bugs left over from the string rewrite of a year ago.
- Documentation updates, including major updates to --help for scripts.
- Need to append config files.
- Get model_version working.
- Adds T85_T85_mg17 grid.
- Correct spelling of protocol.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5a54b88 Merge pull request #2588 from jedwards4b/xmlquery_fix
0b07cb5 Merge pull request #2591 from jedwards4b/configure_mpilib
5f4c8e4 Merge pull request #2586 from gold2718/pelayout_fixes
6ebcd23 Merge pull request #2585 from ESMCI/mvertens/documentation_updates
940e29c need this to append config files
72a1cf6 Merge pull request #2579 from ekluzek/clm50r1/cime5.6.3
b86853d Merge pull request #2575 from jedwards4b/newgrid
fcebaad Merge pull request #2571 from jedwards4b/misspelling_protocol
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/e3sm/config_inputdata.xml
M config/xml_schemas/config_inputdata.xsd
M doc/source/conf.py
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/cime-config.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/query_testlists
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M tools/configure
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-02-2018
Tag: cime5.6.3
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Fix config write of logical.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
974839b fix config write of logical
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.2
Answer Changes: None
Tests: load_balancing_test.py
hand tested create_newcase --case foo --compset QSC6 --res f19_f19_mg17
Dependencies:
Brief Summary:
- Refine distinction of E vs Q compset.
- Update load balance tool.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2a19cd Merge pull request #2525 from jedwards4b/better_distinguish_compset_Q_from_E
28b8634 Merge pull request #2520 from ESMCI/sarich/update-loadbalancingtool
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case/case.py
M tools/load_balancing_tool/load_balancing_submit.py
M tools/load_balancing_tool/tests/load_balancing_test.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-01-2018
Tag: cime5.6.1
Answer Changes: None, PR #2195 has roundoff for code not currently used.
Tests: scripts_regression_tests, code_checker, by-hand
Dependencies:
Brief Summary:
- Refine cheyenne retry method.
- Save submit options for resubmit.
- Need schema description for NODE_FAIL_REGEX.
- Use nodefail code for cheyenne.
- Make st_archive handle DART's restart history files.
- Check input logic fix.
- Only check for rundir if not a test.
- Jgfouca/branch for acme split 2018-04-26.
- Correct equations of the form **(1/3) to be **(1.0_R8/3.0_R8) to evaluate correctly.
- Remove debug print statements.
- Revert change to cheyenne mpt.
- Remove manage_testlist.
- Testreporter fix.
- Match entire string for XML attribute selectors for env_mach_specific.
- Fix undefined variable in some circumstances.
- wait_for_tests needs to upload case2 logs if there are some
- Another fix for testreporter.py.
User interface changes:
- manage_testlist was removed.
- Changes to matching behavior in env_mach_specific.
- New option to wait_for_tests.
PR summary: git log --oneline --first-parent [previous_tag]..master
5af0e02 Merge pull request #2516 from jedwards4b/refine_retry
5e8a173 Merge pull request #2518 from jedwards4b/save_submit_options
1d7a27d need schema description for NODE_FAIL_REGEX
879249b Merge pull request #2509 from jedwards4b/cheyenne_nodefail
40cf173 Merge pull request #2491 from kdraeder/dart_rh_files
988eff2 Merge pull request #2501 from jedwards4b/check_input_logic_fix
7ee7a0d Merge pull request #2508 from jedwards4b/test_init_fix
fbe0814 Merge pull request #2505 from ESMCI/jgfouca/branch-for-acme-split-2018-04-26
8977e55 Merge pull request #2195 from jedwards4b/diurnal_atmocn_flux_bugfix
4e489b7 remove debug print statements
438e1f0 revert change to cheyenne mpt
2e0ba3b Merge pull request #2503 from ESMCI/fischer/rm_manage_testlist
cf19590 Merge pull request #2502 from ESMCI/fischer/testreporter_fix
1a7dac9 Merge pull request #2499 from ESMCI/jgfouca/match_entire_string
71be68f Fix undefined variable in some circumstances
6673d6a Merge pull request #2498 from ESMCI/jgfouca/wait_for_tests_case2
8360ddc Merge pull request #2494 from ESMCI/fischer/test_reporter
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/config_inputdata.xml
M config/e3sm/machines/Depends.titan.pgi
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
M config/e3sm/tests.py
A config/e3sm/usermods_dirs/README
D config/e3sm/usermods_dirs/b1850/shell_commands
D config/e3sm/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_machines.xsd
M doc/source/users_guide/testing.rst
M scripts/Tools/case.submit
M scripts/Tools/jenkins_generic_job
M scripts/Tools/wait_for_tests
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/get_tests.py
D scripts/manage_testlists
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-19-2018
Tag: cime5.6.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Don't access data servers if no data is needed.
- Add a test of the st_archive capability.
- Improve help message for resubmitting to dash.
- Simple compare improvement.
- Force the NODEFAIL test to run on the cheyenne regular queue.
- Download refcase from servers for hybrid.
- Add a warning if an unsupported testlist.xml is encountered.
- Replace TOTALPES with total_tasks.
- Fix massive misuse of TOTALPES for mpi -np all across e3sm.
- Fix test_scheduler's computation of procs needed for a test.
- Transition CIME to using a custom util for copying files.
- Minor fix to help msgs for options for e3sm mgmt tools.
User interface changes:
- case.st_archive now has a --test option.
PR summary: git log --oneline --first-parent [previous_tag]..master
0cd58a7 Merge pull request #2489 from jedwards4b/nodatanoserver
aeb0f47 Merge pull request #2470 from jedwards4b/st_archive_test
f1c2759 Improve help message for resubmitting to dash
afc640c Merge pull request #2487 from jedwards4b/simple_compare_improvement
9410812 Merge pull request #2486 from jedwards4b/nodefail_fix
d3c73b7 Merge pull request #2481 from jedwards4b/cid_decesm
b0afec2 Merge pull request #2482 from jedwards4b/testlist_format
3874d08 replace TOTALPES with total_tasks
28265be Fix massive misuse of TOTALPES for mpi -np all across e3sm
9344b16 Merge pull request #2479 from ESMCI/jgfouca/fix_test_sched_procs_needed
f48c994 Merge pull request #2475 from ESMCI/jgfouca/safer_copy
adae0ae Minor fix to help msgs for options for e3sm mgmt tools
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/e3sm/config_archive.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/template.st_archive
M config/xml_schemas/config_archive.xsd
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/Servers/svn.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive.py
A scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_cmpgen_namelists.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/locked_files.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-17-2018
Tag: cime5.4.0-alpha.30
Answer Changes: None
Tests: scripts_regression_tests, code checker
Dependencies:
Brief Summary:
- Change the CESM inputdata server precedence order to gridftp, svn, ftp, wget.
- Fix totalpes to properly include threads.
- Refactor BUILD_THREADED case value.
User interface changes:
- New FORCE_BUILD_THREADED.
PR summary: git log --oneline --first-parent [previous_tag]..master
9af0120 Merge pull request #2477 from ESMCI/fischer/gftp_svn_ftp
d556876 Merge pull request #2465 from jedwards4b/fix_totalpes
ed78b14 Merge pull request #2466 from ESMCI/jgfouca/refactor_build_threaded
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/config_tests.xml
M scripts/Tools/Makefile
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_utils.py
M scripts/manage_pes
M scripts/manage_testlists
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.pio
M src/drivers/mct/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-13-2018
Tag: cime5.4.0-alpha.29
Answer Changes: None
Tests: scripts_regression_tests
code_checker, testing by hand
Dependencies:
Brief Summary:
- Fix variable initialization.
- Add model doi url to seq_infodata and to cpl history global attributes.
- Remove the LOGDIR variable and stop copying logs back to the case directory.
- Fix env_mach_specific.sh file when module init is None.
- Support renamed glimmer-cism directory; add README files to SourceMods directories.
- Add f10_f10_mg37 grid.
- Update casename restrictions.
- Update statistical ensemble test for new verison of CESM.
- Add PEM test to cime developer.
- Add inputdata servers for grid ftp, ftp, and wget.
- Use --no-logging in call to checkout_externals.
- Add support for stampede2-skx and stampede2-knl at TACC.
- split_test_py
- Merge commit '20e3277dd143e4058ffa0ef610180c199cbb6ea1'
- E3SM split.
- PEA and PEM need to call case_setup for case2.
- Revert small piece of #2299.
- Fixes the potential leak reported by address sanitizer in PIO.
- Reorganize Users Guide part 1 and 2 content.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
057e8a5 fix variable initialization
4913315 Merge pull request #2468 from ESMCI/mvertens/model_doi_url
37985f4 Merge pull request #2461 from jedwards4b/remove_logdir
f1f498f Merge pull request #2464 from ESMCI/jgfouca/never_source_none
b16ec34 Merge pull request #2462 from billsacks/rename_glimmer_cism_v2
0cead4e Merge pull request #2463 from ESMCI/fischer/f10_f10_mg37
08e05e2 Merge pull request #2460 from jedwards4b/update_casename_restrictions
578a7ab Merge pull request #2447 from allibco/master
356cec0 Merge pull request #2449 from ESMCI/jgfouca/add_pem_test_to_cimedev
a1d7814 Merge pull request #2439 from jedwards4b/addgridftp
0126382 Merge pull request #2444 from billsacks/manic_no_logging
dd58d01 Merge pull request #2440 from ESMCI/fischer/stampede2
9febe47 Merge branch 'jgfouca/split_test_py'
35a70fc Merge commit '20e3277dd143e4058ffa0ef610180c199cbb6ea1'
b06a755 Merge pull request #2433 from ESMCI/jgfouca/branch-for-acme-split-2018-04-09
f18bc36 Merge pull request #2437 from jedwards4b/fixpeaandpem
826c8ec Merge pull request #2434 from ESMCI/jgfouca/minor_seq_comm_mct_revert
35ce6f1 Merge pull request #2432 from ESMCI/mfdeakin-sandia/fix_pio_reported_leak
67088a3 Merge pull request #2407 from ESMCI/rljacob/docs/reorg-ug
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
A config/e3sm/machines/Depends.summit.ibm
A config/e3sm/machines/Depends.theta.intel
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
D config/e3sm/testmods_dirs/allactive/cam/cosplite/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D config/e3sm/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/bgcexp/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/bgcexp/xmlchange_cmnds
D config/e3sm/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/eca/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/fates/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/rd/user_nl_clm
D config/e3sm/testmods_dirs/allactive/clm/vst/user_nl_clm
D config/e3sm/testmods_dirs/allactive/drv/y100k
D config/e3sm/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/v1cmip6/shell_commands
D config/e3sm/testmods_dirs/allactive/v1cmip6/xmlchange_cmnds
A config/e3sm/tests.py
M config/xml_schemas/config_inputdata.xsd
M doc/source/index.rst
D doc/source/users_guide/adding-cases.rst
D doc/source/users_guide/case-basics.rst
A doc/source/users_guide/cime-config.rst
M doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/compsets.rst
M doc/source/users_guide/create-a-case.rst
D doc/source/users_guide/creating-new-compsets.rst
D doc/source/users_guide/customizing-a-case.rst
A doc/source/users_guide/grids.rst
M doc/source/users_guide/index.rst
A doc/source/users_guide/machine.rst
D doc/source/users_guide/optimizing-processor-layout.rst
A doc/source/users_guide/pes-threads.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
A doc/source/users_guide/timers.rst
M doc/source/users_guide/use_cases/basics-a-basic-example.rst
D doc/source/users_guide/use_cases/basics-mpi-example.rst
A doc/source/users_guide/use_cases/cesm-nml.rst
A doc/source/users_guide/use_cases/datamod-nml.rst
A doc/source/users_guide/use_cases/driver-nml.rst
A doc/source/users_guide/use_cases/namelist-gen.rst
M doc/source/users_guide/use_cases/use-cases.rst
M scripts/Tools/Makefile
M scripts/Tools/list_e3sm_tests
D scripts/Tools/update_e3sm_tests
M scripts/create_test
M scripts/lib/CIME/Servers/__init__.py
M scripts/lib/CIME/Servers/ftp.py
A scripts/lib/CIME/Servers/gftp.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
A scripts/lib/get_tests.py
D scripts/lib/update_e3sm_tests.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/externals/pio1/pio/piodarray.F90.in
M src/share/timing/ChangeLog
M src/share/timing/gptl.h
M src/share/timing/private.h
M tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-06-2018
Tag: cime5.4.0-alpha.28
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
scripts_regression_tests.py
code_checker
Dependencies:
Brief Summary:
- py3 fix
- Fix for ERI test.
- More fixes for archiver and tests.
- cime_bisect improvements.
- ERS and ERI tests need skip_pnl=False.
- More fixes related to cesm testing.
- CESM test fixes.
- Refactor crucial run_sub_or_cmd method.
- Restore shell batch capability.
User interface changes:
- New custom script option.
PR summary: git log --oneline --first-parent [previous_tag]..master
35fd3d1 py3 fix
6c6d3b5 Merge pull request #2429 from jedwards4b/eri_fix
83ef1ba Merge pull request #2426 from jedwards4b/archiver_and_test_fixes
58f020d Merge pull request #2425 from ESMCI/jgfouca/cime_bisect_improvements
3c3fdeb Merge pull request #2424 from jedwards4b/cesm_sta_fixes
603d5da Merge pull request #2423 from jedwards4b/cesm_sta_fixes
fc83e87 Merge pull request #2422 from jedwards4b/cesm_sta_fixes
7602f4b Merge pull request #2420 from ESMCI/jgfouca/refactor_run_sub_or_cmd
d9e3cdf Merge pull request #2419 from ESMCI/jgfouca/restore_shell_batch
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M scripts/Tools/cime_bisect
M scripts/Tools/mkSrcfiles
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M src/drivers/mct/cime_config/config_archive.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-03-2018
Tag: cime5.4.0-alpha.27
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Avoid encode error.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
018c8e9 avoid encode error
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/test_scheduler.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-02-2018
Tag: cime5.4.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests
high-res couple runs on Theta and Cori-KNL
./create_test cime_developer on hobart
hand testing
e3sm_developer
code_checker
Dependencies:
Brief Summary:
- Remove the run_e3sm testing scripts from the CIME repo.
- Fix pylint
- Update hobart queue limits.
- Allow env vars to be unresolved.
- Add mosart restart history to archive list.
- Improve cprnc build.
- External script handling.
- Update MPI message tags in coupler-component exchanges.
- Always downscale walltime for tests.
- st_archive the DART restart history files.
- Do not make unnecessary env_batch jobs or batch job scripts.
- Add unofficial support for shell version of case.run batch script.
- Remove test mod from cime_developer PET test.
- Only set and check glcrun_avg_alarm if glc_prognostic is true.
- Branch for acme split 2018-03-27.
- Allow case_diff to work on cases that are not tests.
- Locals method did not work in py3, using getattr instead works in both.
- env_mach_specific was coded to always try to combine module operations.
Instead, it should only do that for "module" module systems.
- Rearrange case subdirectory.
- Remove text 'ccsm' and 'cesm' and replace appropriately.
- Add comment.
- Permit IOErrors as well as OSErrors when trying to copy crpnc log.
- Update MCT to 2.10rc2.
- Make case tools part of the Case object.
- Cleanup acme -> e3sm references in rst documentation.
- Add an A and X compset test to aux_cime_baselines.
- Compare two case setup.
- Remove old pointclm directory.
- Update key concepts documentation.
- Fix skip-pnl for tests.
- Order e3sm test list by runtime.
- Update to newer version of cprnc on hobart.
- Support full matching restrictions for batch directives.
- Ignore files beginning in test_.
- More updates to e3sm cime mgmt.
- Rename and reorg upper level contents.
- Move example of query_config to introduction.
- Add switch to list of module actions that cannot be batched.
- Improve create_test error message.
- Allow custom batch directive prefixes.
- Provide infrastructure to allow single column model to run with SE dycore.
- Branch for acme split 2018-03-13.
- Add better output to cime mgmt tool.
- Add stack size modifier to hobart.
- Add ability to xmlquery derived attributes.
- Modify regex for hobart to work on compute nodes.
- Make sure to clean repo before doing cime updates.
- st archive/encapsulate datetime.
- lawrencium machine cesm entries.
- Add a CONTRIBUTING file welcoming contributions and giving some brief guidance.
- Documentation updates for user customization.
- Fix XML errors in config_archive for E3SM.
- Implement improvements to st_archive regular expressions.
- Remove the run_e3sm testing scripts from the CIME repo.
User interface changes:
- env_archive.xml
- .case.run.sh file generated for E3SM.
- New selectors allowed for batch directives.
- Source code files beginning in test_ will be ignored in build.
- New prefix attribute available for batch directives.
- xmlquery will now accept derived attributes.
- Users may run on lawrencium lr3/lr2.
- In env_archive.xml.
PR summary: git log --oneline --first-parent [previous_tag]..master
de9dc73 Merge pull request #2418 from ESMCI/mfdeakin-sandia/rm_run_e3sm_testing
e9e89bc Fix pylint
150db63 Merge pull request #2362 from mnlevy1981/cesm/hobart_updates
bf467f3 Merge pull request #2412 from jedwards4b/allow_unresolved_envvars
6605d4d add mosart restart history to archive list
6652100 Merge pull request #2417 from jedwards4b/cprnc_build
ed4130b Merge pull request #2413 from jedwards4b/external_script_handling
020fd34 Merge pull request #2397 from ESMCI/azamat/update-msgtag-in-cpl-comp-exchanges
43bfaef Merge pull request #2410 from ESMCI/jgfouca/downscale_walltime_force_queue
8799abc Merge pull request #2415 from kdraeder/dart_rest_hist
7d9c9c5 Merge pull request #2405 from ESMCI/jgfouca/cleanup_envbatch_and_batch_scripts
74696ed Merge pull request #2386 from ESMCI/jgfouca/e3sm_bash_batch
5539ece Remove test mod from cime_developer PET test
39fd78e Merge pull request #2404 from billsacks/glcrun_avg_alarm
356fda0 Merge pull request #2406 from ESMCI/jgfouca/branch-for-acme-split-2018-03-27
19675f9 Merge pull request #2398 from ESMCI/jgfouca/fix_case_diff_newcase
07a6b94 Merge pull request #2400 from jedwards4b/py3_fix
04929cf Merge pull request #2396 from ESMCI/jgfouca/fix_soft_env_files
e425f67 Merge pull request #2389 from jedwards4b/rearrange_case
c1a43b2 Merge pull request #2392 from jedwards4b/deccsmize
1178fe3 Add coment
6ea8e9e Permit IOErrors as well as OSErrors when trying to copy crpnc log
ac82489 Merge pull request #2374 from ESMCI/rljacob/update-mct-2.10rc2
0ca70da Merge pull request #2382 from jedwards4b/compare_two_case_setup
bbf8938 Merge pull request #2384 from bertinia/master
81674ac Merge pull request #2383 from ESMCI/fischer/aux_cime
d8c4c98 Merge pull request #2378 from jedwards4b/compare_two_case_setup
191d9f2 Merge pull request #2380 from ESMCI/rljacob/remove-old-pointclm
aca08fb Merge pull request #2370 from ESMCI/rljacob/update-concepts
c3b080b Merge pull request #2373 from ESMCI/jgfouca/fix_skip_pnl_tests
8fc1332 Merge pull request #2372 from ESMCI/jgfouca/create_test_order_tests
02d9896 Merge pull request #2371 from ESMCI/fischer/cprnc
8f4dadd Merge pull request #2369 from ESMCI/jgfouca/support_full_matching_for_batch_directives
5dc8b87 Merge pull request #2366 from jedwards4b/mkSrcchange
18ca549 Merge pull request #2367 from ESMCI/jgfouca/more_updates_to_e3sm_cime_mgmt
e952232 Merge pull request #2365 from ESMCI/rljacob/update-contents
1f355e1 Merge pull request #2364 from ESMCI/rljacob/move-querydoc
8fce4aa Add switch to list of module actions that cannot be batched
72bfc32 Merge pull request #2352 from ESMCI/jgfouca/improve_create_test_err_msg
a61a911 Merge pull request #2359 from ESMCI/jgfouca/allow_custom_directive_prefix
5e97685 Merge pull request #2344 from ESMCI/bogensch/SCM_SESCM
ec55a15 Merge pull request #2357 from ESMCI/jgfouca/branch-for-acme-split-2018-03-13
3bdab2c Add better output to cime mgmt tool
336f6d4 Merge pull request #2356 from jedwards4b/hobart_regex_update
e078c25 Merge pull request #2355 from ESMCI/jgfouca/xmlquery_derived_attributes
156458f Merge pull request #2354 from jedwards4b/hobart_regex_update
8597596 Make sure to clean repo before doing cime updates
0fe7a9e Merge pull request #2347 from ESMCI/mfdeakin-sandia/st_archive/encapsulate_datetime
c0272bf Merge pull request #2350 from rgknox/rgknox-lawrencium-mach
28270b7 Merge pull request #2346 from ESMCI/rljacob/add-contributing
46f371a Merge pull request #2345 from ESMCI/mvertens/addition_to_docs
2b51643 Fix XML errors in config_archive for e3
df4f779 Implement improvements to st_archive regular expressions
Modified files: git diff --name-status [previous_tag]
M .gitignore
A CONTRIBUTING.md
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/config_headers.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/usermods_dirs/b1850/shell_commands
D config/e3sm/allactive/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/allactive/usermods_dirs/b1850_cism/user_nl_cism
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
A config/e3sm/machines/Depends.summit.pgiacc
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/syslog.anvil
M config/e3sm/machines/syslog.cetus
M config/e3sm/machines/syslog.cori-haswell
M config/e3sm/machines/syslog.cori-knl
M config/e3sm/machines/syslog.edison
M config/e3sm/machines/syslog.mira
M config/e3sm/machines/syslog.theta
M config/e3sm/machines/syslog.titan
M config/e3sm/machines/template.case.run
A config/e3sm/machines/template.case.run.sh
M config/e3sm/machines/template.case.test
M config/e3sm/machines/template.st_archive
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
A config/e3sm/testmods_dirs/allactive/v1cmip6/README
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1cmip6/xmlchange_cmnds
A config/e3sm/usermods_dirs/b1850/shell_commands
A config/e3sm/usermods_dirs/b1850_cism/include_user_mods
A config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_batch.xsd
M doc/source/build_cpl/index.rst
M doc/source/conf.py
M doc/source/data_models/data-ocean.rst
M doc/source/data_models/index.rst
M doc/source/driver_cpl/index.rst
M doc/source/index.rst
A doc/source/misc_tools/ect.rst
M doc/source/misc_tools/index.rst
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/creating-new-compsets.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/testing.rst
M doc/source/what_cime/index.rst
D doc/source/xml_files/acme.rst
M doc/source/xml_files/drivers.rst
A doc/source/xml_files/e3sm.rst
M doc/source/xml_files/index.rst
M doc/tools_autodoc.cfg
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/Tools/mkSrcfiles
D scripts/Tools/pointclm/README
D scripts/Tools/pointclm/makepointdata.py
D scripts/Tools/pointclm/pointCLM.py
D scripts/Tools/pointclm/post_process.py
D scripts/Tools/pointclm/site_fullrun.py
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/SystemTests/mcc.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/build.py
D scripts/lib/CIME/case.py
A scripts/lib/CIME/case/README
A scripts/lib/CIME/case/__init__.py
A scripts/lib/CIME/case/case.py
A scripts/lib/CIME/case/case_clone.py
A scripts/lib/CIME/case/case_cmpgen_namelists.py
A scripts/lib/CIME/case/case_run.py
A scripts/lib/CIME/case/case_setup.py
A scripts/lib/CIME/case/case_st_archive.py
A scripts/lib/CIME/case/case_submit.py
A scripts/lib/CIME/case/case_test.py
A scripts/lib/CIME/case/check_input_data.py
A scripts/lib/CIME/case/check_lockedfiles.py
A scripts/lib/CIME/case/preview_namelists.py
D scripts/lib/CIME/case_clone.py
D scripts/lib/CIME/case_cmpgen_namelists.py
D scripts/lib/CIME/case_run.py
D scripts/lib/CIME/case_setup.py
D scripts/lib/CIME/case_st_archive.py
D scripts/lib/CIME/case_submit.py
D scripts/lib/CIME/case_test.py
D scripts/lib/CIME/check_input_data.py
D scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_test_results.py
A scripts/lib/CIME/date.py
M scripts/lib/CIME/hist_utils.py
A scripts/lib/CIME/locked_files.py
D scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_e3sm_tests.py
D scripts/tests/run_e3sm_ctest/CMakeLists.txt
D scripts/tests/run_e3sm_ctest/CTestConfig.cmake
D scripts/tests/run_e3sm_ctest/runE3smTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_archive.xml
M src/components/data_comps/dice/cime_config/config_archive.xml
M src/components/data_comps/dlnd/cime_config/config_archive.xml
M src/components/data_comps/docn/cime_config/config_archive.xml
M src/components/data_comps/drof/cime_config/config_archive.xml
M src/components/data_comps/dwav/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/externals/mct/README
M src/externals/mct/doc/mct_APIs.tex
M src/externals/mct/mct/m_Rearranger.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_scam_mod.F90
M tools/cprnc/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-06-2018
Tag: cime5.4.0-alpha.25
Answer Changes: Climate Changing for non-B 1850 compsets in CESM
Tests: scripts_regression_tests.py
hand test SMS_P1x4.f19_g16.X
code checker
edison build test for A,X, and B1850 compsets
Dependencies:
Brief Summary:
- Add support for environment and module to depend on job.
- Fix mistake in scripts-regression-tests help dump.
- Env batch cleanup
- Add queue attribute (small cheyenne jobs go to share queue).
- For Travis-CI build: kick off build on master whenever it's pushed.
- Reinstate ability to select queue by num tasks.
- Give st_archive an extra 10 min just to be sure.
- Refactor handling of small jobs.
- Report lock file info as debug output.
- Auto-regen batch files in case_submit.
- Add travis_ci testing.
- Supported attribute is string.
- Cleanup xml.
- Redo orb_year_defaults for cesm only.
Expected to change answers for non-B 1850 compsets in CESM
- Add supported flag to testlist.xml.
- Big upgrade to scripts_regression_tests argument handling.
- Update esmf module for edison.nersc.gov.
- New allow_error field for module system.
- Fix trivial pylint problem.
- Add the comment from config_pes.xml to the env_mach_pes.xml file.
- Refactor _get_datenames to count the correct number of cpl.r files.
- Change subtree split method.
- Jgfouca/branch for acme split 2018-02-22.
- Fix uninitialized variable.
- python2 needs an init file in Servers.
- Catch more errors in the testlist schema, remove generic GSW DATM_MODE ignore scripts/cases.
- Add support for ftp and wget.
- Add support for provenance in cesm.
- Swap command cannot be batched together.
- Add xml support for inputdata server.
- Fix bug when providing -p PROJECT flag to create_test.
- Rename acme to e3sm everywhere.
- Update components' communicator initialization.
- Make get_components return None instead of fail.
User interface changes:
- (cesm only) create_test and query_testlist now have --supported-only flag
- New allow_error attribute for module systems.
- check_input_data replace --svn-loc with --server and --protocol
- Some Tools with "acme" in the name now say "e3sm".
PR summary: git log --oneline --first-parent [previous_tag]..master
c9c5695 Merge pull request #2341 from jedwards4b/mpirun_depends_on_queue
7dff579 Fix mistake in scripts-regression-tests help dump
bfb23dd Merge pull request #2339 from jedwards4b/env_batch_cleanup
c19fd3f Merge pull request #2335 from jedwards4b/cheyenne_share_queue
8311f8e Merge pull request #2333 from billsacks/travis_build_master
a5ed418 Merge pull request #2327 from ESMCI/jgfouca/allow_queue_selection_by_task
8f6f199 Give st_archive an extra 10 min just to be sure
751c895 Merge pull request #2326 from ESMCI/jgfouca/refacor_small_jobs
d4fc951 Merge pull request #2325 from ESMCI/jgfouca/adjust_lock_output
a9607d7 Merge pull request #2320 from ESMCI/jgfouca/upgrade_batch_script_handling
e93296a Merge pull request #2324 from jedwards4b/travis_ci
41ef5a3 Merge pull request #2321 from jedwards4b/supported_flag_for_testlist
a714422 Merge pull request #2323 from jedwards4b/cleanup_xml
43c0308 Merge pull request #2290 from jedwards4b/orb_year_defaults
c5aa74b Merge pull request #2316 from jedwards4b/supported_flag_for_testlist
1ac42bb Merge pull request #2319 from ESMCI/jgfouca/script_regr_test_arg_upgrade
fdf7757 Merge pull request #2318 from ESMCI/fischer/edison
68e7b765 Merge pull request #2317 from ESMCI/jgfouca/allow_stderr_in_env_modules
ab6d933 Fix trivial pylint problem
93dde2b Merge pull request #2315 from jedwards4b/add_comment_pes_file
cae9f9a Merge pull request #2285 from kdraeder/multi_drv_kdr
7f8c26a Merge pull request #2314 from ESMCI/jgfouca/chg_subtree_split_method
92ccb83 Merge pull request #2312 from ESMCI/jgfouca/branch-for-acme-split-2018-02-22
c82664e fix uninitialized variable
8a86965 python2 needs an init file in Servers
5af94aa Merge pull request #2300 from ekluzek/testlistxsdgitig
69e35b2 Merge pull request #2311 from jedwards4b/ftpandwget
8baf2bb Merge pull request #2305 from jedwards4b/cesm_provenance
8ac3dd2 Merge pull request #2310 from ESMCI/jgfouca/fix_env_module_operation_batching
ec9483c Merge pull request #2309 from jedwards4b/inputdata
ba3c1fb Merge pull request #2306 from ESMCI/jgfouca/fix_bug_when_setting_proj
6405d72 Merge pull request #2296 from ESMCI/rljacob/acme2e3sm
219ee5a Merge pull request #2299 from ESMCI/azamat/update-seq_comm_setcomm-calls
6c3f484 Merge pull request #2298 from ESMCI/jgfouca/fix_query_config_again
Modified files: git diff --name-status [previous_tag]
M .gitignore
A .travis.yml
D config/acme/allactive/config_compsets.xml
D config/acme/allactive/config_pesall.xml
D config/acme/allactive/testlist_allactive.xml
D config/acme/allactive/usermods_dirs/b1850/shell_commands
D config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
D config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
D config/acme/config_archive.xml
D config/acme/config_files.xml
D config/acme/config_grids.xml
D config/acme/machines/Depends.cetus
D config/acme/machines/Depends.cray
D config/acme/machines/Depends.gnu
D config/acme/machines/Depends.intel
D config/acme/machines/Depends.mira
D config/acme/machines/Depends.nag
D config/acme/machines/Depends.summitdev.ibm
D config/acme/machines/Depends.summitdev.pgiacc
D config/acme/machines/Depends.titan.cray
D config/acme/machines/Depends.titan.intel
D config/acme/machines/Depends.titan.pgi
D config/acme/machines/Depends.titan.pgiacc
D config/acme/machines/README
D config/acme/machines/config_batch.xml
D config/acme/machines/config_batch.xsd
D config/acme/machines/config_compilers.xml
D config/acme/machines/config_machines.xml
D config/acme/machines/config_pio.xml
D config/acme/machines/syslog.anvil
D config/acme/machines/syslog.cetus
D config/acme/machines/syslog.cori-haswell
D config/acme/machines/syslog.cori-knl
D config/acme/machines/syslog.edison
D config/acme/machines/syslog.mira
D config/acme/machines/syslog.noop
D config/acme/machines/syslog.theta
D config/acme/machines/syslog.titan
D config/acme/machines/template.case.run
D config/acme/machines/template.case.test
D config/acme/machines/template.ocn_diagnostics
D config/acme/machines/template.st_archive
D config/acme/machines/template.timeseries
D config/acme/machines/userdefined_laptop_template/README.md
D config/acme/machines/userdefined_laptop_template/config_compilers.xml
D config/acme/machines/userdefined_laptop_template/config_machines.xml
D config/acme/machines/userdefined_laptop_template/config_pes.xml
D config/acme/testmods_dirs/allactive/cam/cosplite/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/eca/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/fates/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/rd/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/vst/user_nl_clm
D config/acme/testmods_dirs/allactive/drv/y100k
D config/acme/testmods_dirs/allactive/force_netcdf_pio/shell_commands
D config/acme/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/mach_mods/shell_commands
M config/cesm/config_files.xml
A config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
A config/e3sm/allactive/config_compsets.xml
A config/e3sm/allactive/config_pesall.xml
A config/e3sm/allactive/testlist_allactive.xml
A config/e3sm/allactive/usermods_dirs/b1850/shell_commands
A config/e3sm/allactive/usermods_dirs/b1850_cism/include_user_mods
A config/e3sm/allactive/usermods_dirs/b1850_cism/user_nl_cism
A config/e3sm/config_archive.xml
A config/e3sm/config_files.xml
A config/e3sm/config_grids.xml
A config/e3sm/config_inputdata.xml
A config/e3sm/machines/Depends.cetus
A config/e3sm/machines/Depends.cray
A config/e3sm/machines/Depends.gnu
A config/e3sm/machines/Depends.intel
A config/e3sm/machines/Depends.mira
A config/e3sm/machines/Depends.nag
A config/e3sm/machines/Depends.summitdev.ibm
A config/e3sm/machines/Depends.summitdev.pgiacc
A config/e3sm/machines/Depends.titan.cray
A config/e3sm/machines/Depends.titan.intel
A config/e3sm/machines/Depends.titan.pgi
A config/e3sm/machines/Depends.titan.pgiacc
A config/e3sm/machines/README
A config/e3sm/machines/config_batch.xml
A config/e3sm/machines/config_compilers.xml
A config/e3sm/machines/config_machines.xml
A config/e3sm/machines/config_pio.xml
A config/e3sm/machines/syslog.anvil
A config/e3sm/machines/syslog.cetus
A config/e3sm/machines/syslog.cori-haswell
A config/e3sm/machines/syslog.cori-knl
A config/e3sm/machines/syslog.edison
A config/e3sm/machines/syslog.mira
A config/e3sm/machines/syslog.noop
A config/e3sm/machines/syslog.theta
A config/e3sm/machines/syslog.titan
A config/e3sm/machines/template.case.run
A config/e3sm/machines/template.case.test
A config/e3sm/machines/template.ocn_diagnostics
A config/e3sm/machines/template.st_archive
A config/e3sm/machines/template.timeseries
A config/e3sm/machines/userdefined_laptop_template/README.md
A config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
A config/e3sm/machines/userdefined_laptop_template/config_machines.xml
A config/e3sm/machines/userdefined_laptop_template/config_pes.xml
A config/e3sm/testmods_dirs/allactive/cam/cosplite/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/eca/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/fates/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/rd/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/vst/user_nl_clm
A config/e3sm/testmods_dirs/allactive/drv/y100k
A config/e3sm/testmods_dirs/allactive/force_netcdf_pio/shell_commands
A config/e3sm/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/mach_mods/shell_commands
M config/xml_schemas/config_batch.xsd
A config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_batch.xsd
M config/xml_schemas/env_mach_pes.xsd
M config/xml_schemas/env_mach_specific.xsd
M config/xml_schemas/testlist.xsd
D scripts/Tools/acme_check_env
D scripts/Tools/acme_cime_merge
D scripts/Tools/acme_cime_split
M scripts/Tools/check_input_data
M scripts/Tools/code_checker
A scripts/Tools/e3sm_check_env
A scripts/Tools/e3sm_cime_merge
A scripts/Tools/e3sm_cime_split
M scripts/Tools/jenkins_generic_job
D scripts/Tools/list_acme_tests
A scripts/Tools/list_e3sm_tests
M scripts/Tools/preview_run
D scripts/Tools/update_acme_tests
A scripts/Tools/update_e3sm_tests
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/BuildTools/makemacroswriter.py
A scripts/lib/CIME/Servers/__init__.py
A scripts/lib/CIME/Servers/ftp.py
A scripts/lib/CIME/Servers/generic_server.py
A scripts/lib/CIME/Servers/svn.py
A scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
A scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/lib/acme_cime_mgmt.py
A scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/jenkins_generic_job.py
D scripts/lib/update_acme_tests.py
A scripts/lib/update_e3sm_tests.py
D scripts/tests/run_acme_ctest/CMakeLists.txt
D scripts/tests/run_acme_ctest/CTestConfig.cmake
D scripts/tests/run_acme_ctest/runAcmeTest_template.sh
A scripts/tests/run_e3sm_ctest/CMakeLists.txt
A scripts/tests/run_e3sm_ctest/CTestConfig.cmake
A scripts/tests/run_e3sm_ctest/runE3smTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
D src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
A src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-06-2018
Tag: cime5.4.0-alpha.28
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
scripts_regression_tests.py
code_checker
Dependencies:
Brief Summary:
- py3 fix
- Fix for ERI test.
- More fixes for archiver and tests.
- cime_bisect improvements.
- ERS and ERI tests need skip_pnl=False.
- More fixes related to cesm testing.
- CESM test fixes.
- Refactor crucial run_sub_or_cmd method.
- Restore shell batch capability.
User interface changes:
- New custom script option.
PR summary: git log --oneline --first-parent [previous_tag]..master
35fd3d1 py3 fix
6c6d3b5 Merge pull request #2429 from jedwards4b/eri_fix
83ef1ba Merge pull request #2426 from jedwards4b/archiver_and_test_fixes
58f020d Merge pull request #2425 from ESMCI/jgfouca/cime_bisect_improvements
3c3fdeb Merge pull request #2424 from jedwards4b/cesm_sta_fixes
603d5da Merge pull request #2423 from jedwards4b/cesm_sta_fixes
fc83e87 Merge pull request #2422 from jedwards4b/cesm_sta_fixes
7602f4b Merge pull request #2420 from ESMCI/jgfouca/refactor_run_sub_or_cmd
d9e3cdf Merge pull request #2419 from ESMCI/jgfouca/restore_shell_batch
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M scripts/Tools/cime_bisect
M scripts/Tools/mkSrcfiles
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M src/drivers/mct/cime_config/config_archive.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-03-2018
Tag: cime5.4.0-alpha.27
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Avoid encode error.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
018c8e9 avoid encode error
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/test_scheduler.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-02-2018
Tag: cime5.4.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests
high-res couple runs on Theta and Cori-KNL
./create_test cime_developer on hobart
hand testing
e3sm_developer
code_checker
Dependencies:
Brief Summary:
- Remove the run_e3sm testing scripts from the CIME repo.
- Fix pylint
- Update hobart queue limits.
- Allow env vars to be unresolved.
- Add mosart restart history to archive list.
- Improve cprnc build.
- External script handling.
- Update MPI message tags in coupler-component exchanges.
- Always downscale walltime for tests.
- st_archive the DART restart history files.
- Do not make unnecessary env_batch jobs or batch job scripts.
- Add unofficial support for shell version of case.run batch script.
- Remove test mod from cime_developer PET test.
- Only set and check glcrun_avg_alarm if glc_prognostic is true.
- Branch for acme split 2018-03-27.
- Allow case_diff to work on cases that are not tests.
- Locals method did not work in py3, using getattr instead works in both.
- env_mach_specific was coded to always try to combine module operations.
Instead, it should only do that for "module" module systems.
- Rearrange case subdirectory.
- Remove text 'ccsm' and 'cesm' and replace appropriately.
- Add comment.
- Permit IOErrors as well as OSErrors when trying to copy crpnc log.
- Update MCT to 2.10rc2.
- Make case tools part of the Case object.
- Cleanup acme -> e3sm references in rst documentation.
- Add an A and X compset test to aux_cime_baselines.
- Compare two case setup.
- Remove old pointclm directory.
- Update key concepts documentation.
- Fix skip-pnl for tests.
- Order e3sm test list by runtime.
- Update to newer version of cprnc on hobart.
- Support full matching restrictions for batch directives.
- Ignore files beginning in test_.
- More updates to e3sm cime mgmt.
- Rename and reorg upper level contents.
- Move example of query_config to introduction.
- Add switch to list of module actions that cannot be batched.
- Improve create_test error message.
- Allow custom batch directive prefixes.
- Provide infrastructure to allow single column model to run with SE dycore.
- Branch for acme split 2018-03-13.
- Add better output to cime mgmt tool.
- Add stack size modifier to hobart.
- Add ability to xmlquery derived attributes.
- Modify regex for hobart to work on compute nodes.
- Make sure to clean repo before doing cime updates.
- st archive/encapsulate datetime.
- lawrencium machine cesm entries.
- Add a CONTRIBUTING file welcoming contributions and giving some brief guidance.
- Documentation updates for user customization.
- Fix XML errors in config_archive for E3SM.
- Implement improvements to st_archive regular expressions.
- Remove the run_e3sm testing scripts from the CIME repo.
User interface changes:
- env_archive.xml
- .case.run.sh file generated for E3SM.
- New selectors allowed for batch directives.
- Source code files beginning in test_ will be ignored in build.
- New prefix attribute available for batch directives.
- xmlquery will now accept derived attributes.
- Users may run on lawrencium lr3/lr2.
- In env_archive.xml.
PR summary: git log --oneline --first-parent [previous_tag]..master
de9dc73 Merge pull request #2418 from ESMCI/mfdeakin-sandia/rm_run_e3sm_testing
e9e89bc Fix pylint
150db63 Merge pull request #2362 from mnlevy1981/cesm/hobart_updates
bf467f3 Merge pull request #2412 from jedwards4b/allow_unresolved_envvars
6605d4d add mosart restart history to archive list
6652100 Merge pull request #2417 from jedwards4b/cprnc_build
ed4130b Merge pull request #2413 from jedwards4b/external_script_handling
020fd34 Merge pull request #2397 from ESMCI/azamat/update-msgtag-in-cpl-comp-exchanges
43bfaef Merge pull request #2410 from ESMCI/jgfouca/downscale_walltime_force_queue
8799abc Merge pull request #2415 from kdraeder/dart_rest_hist
7d9c9c5 Merge pull request #2405 from ESMCI/jgfouca/cleanup_envbatch_and_batch_scripts
74696ed Merge pull request #2386 from ESMCI/jgfouca/e3sm_bash_batch
5539ece Remove test mod from cime_developer PET test
39fd78e Merge pull request #2404 from billsacks/glcrun_avg_alarm
356fda0 Merge pull request #2406 from ESMCI/jgfouca/branch-for-acme-split-2018-03-27
19675f9 Merge pull request #2398 from ESMCI/jgfouca/fix_case_diff_newcase
07a6b94 Merge pull request #2400 from jedwards4b/py3_fix
04929cf Merge pull request #2396 from ESMCI/jgfouca/fix_soft_env_files
e425f67 Merge pull request #2389 from jedwards4b/rearrange_case
c1a43b2 Merge pull request #2392 from jedwards4b/deccsmize
1178fe3 Add coment
6ea8e9e Permit IOErrors as well as OSErrors when trying to copy crpnc log
ac82489 Merge pull request #2374 from ESMCI/rljacob/update-mct-2.10rc2
0ca70da Merge pull request #2382 from jedwards4b/compare_two_case_setup
bbf8938 Merge pull request #2384 from bertinia/master
81674ac Merge pull request #2383 from ESMCI/fischer/aux_cime
d8c4c98 Merge pull request #2378 from jedwards4b/compare_two_case_setup
191d9f2 Merge pull request #2380 from ESMCI/rljacob/remove-old-pointclm
aca08fb Merge pull request #2370 from ESMCI/rljacob/update-concepts
c3b080b Merge pull request #2373 from ESMCI/jgfouca/fix_skip_pnl_tests
8fc1332 Merge pull request #2372 from ESMCI/jgfouca/create_test_order_tests
02d9896 Merge pull request #2371 from ESMCI/fischer/cprnc
8f4dadd Merge pull request #2369 from ESMCI/jgfouca/support_full_matching_for_batch_directives
5dc8b87 Merge pull request #2366 from jedwards4b/mkSrcchange
18ca549 Merge pull request #2367 from ESMCI/jgfouca/more_updates_to_e3sm_cime_mgmt
e952232 Merge pull request #2365 from ESMCI/rljacob/update-contents
1f355e1 Merge pull request #2364 from ESMCI/rljacob/move-querydoc
8fce4aa Add switch to list of module actions that cannot be batched
72bfc32 Merge pull request #2352 from ESMCI/jgfouca/improve_create_test_err_msg
a61a911 Merge pull request #2359 from ESMCI/jgfouca/allow_custom_directive_prefix
5e97685 Merge pull request #2344 from ESMCI/bogensch/SCM_SESCM
ec55a15 Merge pull request #2357 from ESMCI/jgfouca/branch-for-acme-split-2018-03-13
3bdab2c Add better output to cime mgmt tool
336f6d4 Merge pull request #2356 from jedwards4b/hobart_regex_update
e078c25 Merge pull request #2355 from ESMCI/jgfouca/xmlquery_derived_attributes
156458f Merge pull request #2354 from jedwards4b/hobart_regex_update
8597596 Make sure to clean repo before doing cime updates
0fe7a9e Merge pull request #2347 from ESMCI/mfdeakin-sandia/st_archive/encapsulate_datetime
c0272bf Merge pull request #2350 from rgknox/rgknox-lawrencium-mach
28270b7 Merge pull request #2346 from ESMCI/rljacob/add-contributing
46f371a Merge pull request #2345 from ESMCI/mvertens/addition_to_docs
2b51643 Fix XML errors in config_archive for e3
df4f779 Implement improvements to st_archive regular expressions
Modified files: git diff --name-status [previous_tag]
M .gitignore
A CONTRIBUTING.md
M ChangeLog
M config/cesm/config_archive.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/config_headers.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
D config/e3sm/allactive/usermods_dirs/b1850/shell_commands
D config/e3sm/allactive/usermods_dirs/b1850_cism/include_user_mods
D config/e3sm/allactive/usermods_dirs/b1850_cism/user_nl_cism
M config/e3sm/config_archive.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
A config/e3sm/machines/Depends.summit.pgiacc
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/syslog.anvil
M config/e3sm/machines/syslog.cetus
M config/e3sm/machines/syslog.cori-haswell
M config/e3sm/machines/syslog.cori-knl
M config/e3sm/machines/syslog.edison
M config/e3sm/machines/syslog.mira
M config/e3sm/machines/syslog.theta
M config/e3sm/machines/syslog.titan
M config/e3sm/machines/template.case.run
A config/e3sm/machines/template.case.run.sh
M config/e3sm/machines/template.case.test
M config/e3sm/machines/template.st_archive
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/bgcexp/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/mach/pet/shell_commands
A config/e3sm/testmods_dirs/allactive/v1cmip6/README
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_cam
A config/e3sm/testmods_dirs/allactive/v1cmip6/user_nl_clm
A config/e3sm/testmods_dirs/allactive/v1cmip6/xmlchange_cmnds
A config/e3sm/usermods_dirs/b1850/shell_commands
A config/e3sm/usermods_dirs/b1850_cism/include_user_mods
A config/e3sm/usermods_dirs/b1850_cism/user_nl_cism
M config/xml_schemas/config_batch.xsd
M doc/source/build_cpl/index.rst
M doc/source/conf.py
M doc/source/data_models/data-ocean.rst
M doc/source/data_models/index.rst
M doc/source/driver_cpl/index.rst
M doc/source/index.rst
A doc/source/misc_tools/ect.rst
M doc/source/misc_tools/index.rst
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/creating-new-compsets.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/testing.rst
M doc/source/what_cime/index.rst
D doc/source/xml_files/acme.rst
M doc/source/xml_files/drivers.rst
A doc/source/xml_files/e3sm.rst
M doc/source/xml_files/index.rst
M doc/tools_autodoc.cfg
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/e3sm_cime_merge
M scripts/Tools/e3sm_cime_split
M scripts/Tools/mkSrcfiles
D scripts/Tools/pointclm/README
D scripts/Tools/pointclm/makepointdata.py
D scripts/Tools/pointclm/pointCLM.py
D scripts/Tools/pointclm/post_process.py
D scripts/Tools/pointclm/site_fullrun.py
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/irt.py
M scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/SystemTests/mcc.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/build.py
D scripts/lib/CIME/case.py
A scripts/lib/CIME/case/README
A scripts/lib/CIME/case/__init__.py
A scripts/lib/CIME/case/case.py
A scripts/lib/CIME/case/case_clone.py
A scripts/lib/CIME/case/case_cmpgen_namelists.py
A scripts/lib/CIME/case/case_run.py
A scripts/lib/CIME/case/case_setup.py
A scripts/lib/CIME/case/case_st_archive.py
A scripts/lib/CIME/case/case_submit.py
A scripts/lib/CIME/case/case_test.py
A scripts/lib/CIME/case/check_input_data.py
A scripts/lib/CIME/case/check_lockedfiles.py
A scripts/lib/CIME/case/preview_namelists.py
D scripts/lib/CIME/case_clone.py
D scripts/lib/CIME/case_cmpgen_namelists.py
D scripts/lib/CIME/case_run.py
D scripts/lib/CIME/case_setup.py
D scripts/lib/CIME/case_st_archive.py
D scripts/lib/CIME/case_submit.py
D scripts/lib/CIME/case_test.py
D scripts/lib/CIME/check_input_data.py
D scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_test_results.py
A scripts/lib/CIME/date.py
M scripts/lib/CIME/hist_utils.py
A scripts/lib/CIME/locked_files.py
D scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_e3sm_tests.py
D scripts/tests/run_e3sm_ctest/CMakeLists.txt
D scripts/tests/run_e3sm_ctest/CTestConfig.cmake
D scripts/tests/run_e3sm_ctest/runE3smTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_archive.xml
M src/components/data_comps/dice/cime_config/config_archive.xml
M src/components/data_comps/dlnd/cime_config/config_archive.xml
M src/components/data_comps/docn/cime_config/config_archive.xml
M src/components/data_comps/drof/cime_config/config_archive.xml
M src/components/data_comps/dwav/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/externals/mct/README
M src/externals/mct/doc/mct_APIs.tex
M src/externals/mct/mct/m_Rearranger.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_scam_mod.F90
M tools/cprnc/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-06-2018
Tag: cime5.4.0-alpha.25
Answer Changes: Climate Changing for non-B 1850 compsets in CESM
Tests: scripts_regression_tests.py
hand test SMS_P1x4.f19_g16.X
code checker
edison build test for A,X, and B1850 compsets
Dependencies:
Brief Summary:
- Add support for environment and module to depend on job.
- Fix mistake in scripts-regression-tests help dump.
- Env batch cleanup
- Add queue attribute (small cheyenne jobs go to share queue).
- For Travis-CI build: kick off build on master whenever it's pushed.
- Reinstate ability to select queue by num tasks.
- Give st_archive an extra 10 min just to be sure.
- Refactor handling of small jobs.
- Report lock file info as debug output.
- Auto-regen batch files in case_submit.
- Add travis_ci testing.
- Supported attribute is string.
- Cleanup xml.
- Redo orb_year_defaults for cesm only.
Expected to change answers for non-B 1850 compsets in CESM
- Add supported flag to testlist.xml.
- Big upgrade to scripts_regression_tests argument handling.
- Update esmf module for edison.nersc.gov.
- New allow_error field for module system.
- Fix trivial pylint problem.
- Add the comment from config_pes.xml to the env_mach_pes.xml file.
- Refactor _get_datenames to count the correct number of cpl.r files.
- Change subtree split method.
- Jgfouca/branch for acme split 2018-02-22.
- Fix uninitialized variable.
- python2 needs an init file in Servers.
- Catch more errors in the testlist schema, remove generic GSW DATM_MODE ignore scripts/cases.
- Add support for ftp and wget.
- Add support for provenance in cesm.
- Swap command cannot be batched together.
- Add xml support for inputdata server.
- Fix bug when providing -p PROJECT flag to create_test.
- Rename acme to e3sm everywhere.
- Update components' communicator initialization.
- Make get_components return None instead of fail.
User interface changes:
- (cesm only) create_test and query_testlist now have --supported-only flag
- New allow_error attribute for module systems.
- check_input_data replace --svn-loc with --server and --protocol
- Some Tools with "acme" in the name now say "e3sm".
PR summary: git log --oneline --first-parent [previous_tag]..master
c9c5695 Merge pull request #2341 from jedwards4b/mpirun_depends_on_queue
7dff579 Fix mistake in scripts-regression-tests help dump
bfb23dd Merge pull request #2339 from jedwards4b/env_batch_cleanup
c19fd3f Merge pull request #2335 from jedwards4b/cheyenne_share_queue
8311f8e Merge pull request #2333 from billsacks/travis_build_master
a5ed418 Merge pull request #2327 from ESMCI/jgfouca/allow_queue_selection_by_task
8f6f199 Give st_archive an extra 10 min just to be sure
751c895 Merge pull request #2326 from ESMCI/jgfouca/refacor_small_jobs
d4fc951 Merge pull request #2325 from ESMCI/jgfouca/adjust_lock_output
a9607d7 Merge pull request #2320 from ESMCI/jgfouca/upgrade_batch_script_handling
e93296a Merge pull request #2324 from jedwards4b/travis_ci
41ef5a3 Merge pull request #2321 from jedwards4b/supported_flag_for_testlist
a714422 Merge pull request #2323 from jedwards4b/cleanup_xml
43c0308 Merge pull request #2290 from jedwards4b/orb_year_defaults
c5aa74b Merge pull request #2316 from jedwards4b/supported_flag_for_testlist
1ac42bb Merge pull request #2319 from ESMCI/jgfouca/script_regr_test_arg_upgrade
fdf7757 Merge pull request #2318 from ESMCI/fischer/edison
68e7b765 Merge pull request #2317 from ESMCI/jgfouca/allow_stderr_in_env_modules
ab6d933 Fix trivial pylint problem
93dde2b Merge pull request #2315 from jedwards4b/add_comment_pes_file
cae9f9a Merge pull request #2285 from kdraeder/multi_drv_kdr
7f8c26a Merge pull request #2314 from ESMCI/jgfouca/chg_subtree_split_method
92ccb83 Merge pull request #2312 from ESMCI/jgfouca/branch-for-acme-split-2018-02-22
c82664e fix uninitialized variable
8a86965 python2 needs an init file in Servers
5af94aa Merge pull request #2300 from ekluzek/testlistxsdgitig
69e35b2 Merge pull request #2311 from jedwards4b/ftpandwget
8baf2bb Merge pull request #2305 from jedwards4b/cesm_provenance
8ac3dd2 Merge pull request #2310 from ESMCI/jgfouca/fix_env_module_operation_batching
ec9483c Merge pull request #2309 from jedwards4b/inputdata
ba3c1fb Merge pull request #2306 from ESMCI/jgfouca/fix_bug_when_setting_proj
6405d72 Merge pull request #2296 from ESMCI/rljacob/acme2e3sm
219ee5a Merge pull request #2299 from ESMCI/azamat/update-seq_comm_setcomm-calls
6c3f484 Merge pull request #2298 from ESMCI/jgfouca/fix_query_config_again
Modified files: git diff --name-status [previous_tag]
M .gitignore
A .travis.yml
D config/acme/allactive/config_compsets.xml
D config/acme/allactive/config_pesall.xml
D config/acme/allactive/testlist_allactive.xml
D config/acme/allactive/usermods_dirs/b1850/shell_commands
D config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
D config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
D config/acme/config_archive.xml
D config/acme/config_files.xml
D config/acme/config_grids.xml
D config/acme/machines/Depends.cetus
D config/acme/machines/Depends.cray
D config/acme/machines/Depends.gnu
D config/acme/machines/Depends.intel
D config/acme/machines/Depends.mira
D config/acme/machines/Depends.nag
D config/acme/machines/Depends.summitdev.ibm
D config/acme/machines/Depends.summitdev.pgiacc
D config/acme/machines/Depends.titan.cray
D config/acme/machines/Depends.titan.intel
D config/acme/machines/Depends.titan.pgi
D config/acme/machines/Depends.titan.pgiacc
D config/acme/machines/README
D config/acme/machines/config_batch.xml
D config/acme/machines/config_batch.xsd
D config/acme/machines/config_compilers.xml
D config/acme/machines/config_machines.xml
D config/acme/machines/config_pio.xml
D config/acme/machines/syslog.anvil
D config/acme/machines/syslog.cetus
D config/acme/machines/syslog.cori-haswell
D config/acme/machines/syslog.cori-knl
D config/acme/machines/syslog.edison
D config/acme/machines/syslog.mira
D config/acme/machines/syslog.noop
D config/acme/machines/syslog.theta
D config/acme/machines/syslog.titan
D config/acme/machines/template.case.run
D config/acme/machines/template.case.test
D config/acme/machines/template.ocn_diagnostics
D config/acme/machines/template.st_archive
D config/acme/machines/template.timeseries
D config/acme/machines/userdefined_laptop_template/README.md
D config/acme/machines/userdefined_laptop_template/config_compilers.xml
D config/acme/machines/userdefined_laptop_template/config_machines.xml
D config/acme/machines/userdefined_laptop_template/config_pes.xml
D config/acme/testmods_dirs/allactive/cam/cosplite/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/eca/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/fates/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/rd/user_nl_clm
D config/acme/testmods_dirs/allactive/clm/vst/user_nl_clm
D config/acme/testmods_dirs/allactive/drv/y100k
D config/acme/testmods_dirs/allactive/force_netcdf_pio/shell_commands
D config/acme/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
D config/acme/testmods_dirs/allactive/mach_mods/shell_commands
M config/cesm/config_files.xml
A config/cesm/config_inputdata.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
A config/e3sm/allactive/config_compsets.xml
A config/e3sm/allactive/config_pesall.xml
A config/e3sm/allactive/testlist_allactive.xml
A config/e3sm/allactive/usermods_dirs/b1850/shell_commands
A config/e3sm/allactive/usermods_dirs/b1850_cism/include_user_mods
A config/e3sm/allactive/usermods_dirs/b1850_cism/user_nl_cism
A config/e3sm/config_archive.xml
A config/e3sm/config_files.xml
A config/e3sm/config_grids.xml
A config/e3sm/config_inputdata.xml
A config/e3sm/machines/Depends.cetus
A config/e3sm/machines/Depends.cray
A config/e3sm/machines/Depends.gnu
A config/e3sm/machines/Depends.intel
A config/e3sm/machines/Depends.mira
A config/e3sm/machines/Depends.nag
A config/e3sm/machines/Depends.summitdev.ibm
A config/e3sm/machines/Depends.summitdev.pgiacc
A config/e3sm/machines/Depends.titan.cray
A config/e3sm/machines/Depends.titan.intel
A config/e3sm/machines/Depends.titan.pgi
A config/e3sm/machines/Depends.titan.pgiacc
A config/e3sm/machines/README
A config/e3sm/machines/config_batch.xml
A config/e3sm/machines/config_compilers.xml
A config/e3sm/machines/config_machines.xml
A config/e3sm/machines/config_pio.xml
A config/e3sm/machines/syslog.anvil
A config/e3sm/machines/syslog.cetus
A config/e3sm/machines/syslog.cori-haswell
A config/e3sm/machines/syslog.cori-knl
A config/e3sm/machines/syslog.edison
A config/e3sm/machines/syslog.mira
A config/e3sm/machines/syslog.noop
A config/e3sm/machines/syslog.theta
A config/e3sm/machines/syslog.titan
A config/e3sm/machines/template.case.run
A config/e3sm/machines/template.case.test
A config/e3sm/machines/template.ocn_diagnostics
A config/e3sm/machines/template.st_archive
A config/e3sm/machines/template.timeseries
A config/e3sm/machines/userdefined_laptop_template/README.md
A config/e3sm/machines/userdefined_laptop_template/config_compilers.xml
A config/e3sm/machines/userdefined_laptop_template/config_machines.xml
A config/e3sm/machines/userdefined_laptop_template/config_pes.xml
A config/e3sm/testmods_dirs/allactive/cam/cosplite/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
A config/e3sm/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/eca/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/fates/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/rd/user_nl_clm
A config/e3sm/testmods_dirs/allactive/clm/vst/user_nl_clm
A config/e3sm/testmods_dirs/allactive/drv/y100k
A config/e3sm/testmods_dirs/allactive/force_netcdf_pio/shell_commands
A config/e3sm/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
A config/e3sm/testmods_dirs/allactive/mach_mods/shell_commands
M config/xml_schemas/config_batch.xsd
A config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_batch.xsd
M config/xml_schemas/env_mach_pes.xsd
M config/xml_schemas/env_mach_specific.xsd
M config/xml_schemas/testlist.xsd
D scripts/Tools/acme_check_env
D scripts/Tools/acme_cime_merge
D scripts/Tools/acme_cime_split
M scripts/Tools/check_input_data
M scripts/Tools/code_checker
A scripts/Tools/e3sm_check_env
A scripts/Tools/e3sm_cime_merge
A scripts/Tools/e3sm_cime_split
M scripts/Tools/jenkins_generic_job
D scripts/Tools/list_acme_tests
A scripts/Tools/list_e3sm_tests
M scripts/Tools/preview_run
D scripts/Tools/update_acme_tests
A scripts/Tools/update_e3sm_tests
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/BuildTools/makemacroswriter.py
A scripts/lib/CIME/Servers/__init__.py
A scripts/lib/CIME/Servers/ftp.py
A scripts/lib/CIME/Servers/generic_server.py
A scripts/lib/CIME/Servers/svn.py
A scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
A scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
D scripts/lib/acme_cime_mgmt.py
A scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/jenkins_generic_job.py
D scripts/lib/update_acme_tests.py
A scripts/lib/update_e3sm_tests.py
D scripts/tests/run_acme_ctest/CMakeLists.txt
D scripts/tests/run_acme_ctest/CTestConfig.cmake
D scripts/tests/run_acme_ctest/runAcmeTest_template.sh
A scripts/tests/run_e3sm_ctest/CMakeLists.txt
A scripts/tests/run_e3sm_ctest/CTestConfig.cmake
A scripts/tests/run_e3sm_ctest/runE3smTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
D src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
A src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-13-2018
Tag: cime5.4.0-alpha.24
Answer Changes: None
Tests: scripts_regression_tests, code_checker
Dependencies:
Brief Summary:
- Query_config parsing fix to find correct component.
- Leverage env command options to assist parsing.
- Add a test that compares a case created using the compset alias to
one created using the longname for the same compset.
- Disable caching withing the main test_scheduler process.
- Upgrade cime_bisect.
- Another exception for read only in config files.
- Add pstrid to pes.
- Fix issues with read only xml.
- Separate post-DA from pause/resume and add resume signal at init.
- Restore case.st_archive.
- Allow merge of xml files without extra child level.
- Fix unused import.
- Reinstate xml file caching, but only for read-only files.
- Backout gnu changes.
- Update modules and mod paths for cheyenne.
- Jgfouca/branch for acme split 2018-01-30.
- Fix bug in generic env load.
- Improve python interface to environment modules.
User interface changes:
- cime_bisect changes.
- New XML variables, PAUSE_ACTIVE_XXX.
- module_lmod no longer a support module type.
PR summary: git log --oneline --first-parent [previous_tag]..master
b4eae37 Merge pull request #2293 from jedwards4b/query_config_fix
c20690e Merge pull request #2292 from ESMCI/jgfouca/fix_soft_env_handling
efcd17f Merge pull request #2288 from jedwards4b/test_compset_vs_alias
51fbde3 Merge pull request #2287 from ESMCI/jgfouca/disable_caching_in_test_sched
0ea9941 Merge pull request #2286 from ESMCI/jgfouca/upgrade_cime_bisect
76a5b5e Merge pull request #2281 from jedwards4b/another_read_only_exception
877250b Merge pull request #2279 from jedwards4b/add_pstrid_to_pes
29b7ccf Merge pull request #2278 from jedwards4b/fix_query_config
b9a79dc Merge pull request #2267 from gold2718/da_support
9706e13 Merge pull request #2273 from ESMCI/jgfouca/restore_case_st_archive
7cfb8ac Merge pull request #2272 from jedwards4b/xmlmerge_fix
964fd19 Fix unused import
4441ff3 Merge pull request #2269 from ESMCI/jgfouca/reinstate_xml_file_caching
4e41375 Merge pull request #2271 from jedwards4b/cheyenne_updates
4ab197e Merge pull request #2270 from jedwards4b/cheyenne_updates
d3740b3 Jgfouca/branch for acme split 2018 01 30 (#2264)
939613e Merge pull request #2265 from ESMCI/jgfouca/fix_env_setup_bug
1e57bf0 Merge pull request #2260 from ESMCI/jgfouca/improve_env_module_interface
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_compsets.xml
M config/acme/allactive/config_pesall.xml
M config/acme/machines/Depends.intel
D config/acme/machines/Depends.intel18
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
D scripts/Tools/case.st_archive
M scripts/Tools/cime_bisect
M scripts/data_assimilation/da_no_data_mod.sh
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/utils.py
M scripts/lib/acme_cime_mgmt.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/desp/cime_config/namelist_definition_desp.xml
M src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M src/components/data_comps/dwav/dwav_comp_mod.F90
M src/components/data_comps/dwav/mct/wav_comp_mct.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-27-2018
Tag: cime5.4.0-alpha.23
Answer Changes: None
Tests: scripts_regression_tests.py on hobart
Dependencies:
Brief Summary:
- Fix compare of env_batch.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
7b88f00 Merge pull request #2261 from jedwards4b/check_locked_files2
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/env_batch.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-26-2018
Tag: cime5.4.0-alpha.22
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Remove debug print statement
- Second fix for user compsets.
- Rearrange code in case.py so that compset alias and
compset longname get the same result.
- Minor fix to get acme provenance test working again.
- Fix for LockedFiles.
- Change PET to be a multisubmit job.
- Minor fix to get query config test working on melvin.
- Disable file caching for now.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2a235e5 remove debug print statement
d6f6e08 Merge pull request #2257 from jedwards4b/user_compset_fix
fea933c Merge pull request #2253 from jedwards4b/user_compset_fix
169518c Minor fix to get acme provenance test working again
91451ed Merge pull request #2254 from jedwards4b/lockedfiles_fix
1878159 Merge pull request #2255 from ESMCI/jgfouca/change_pet_to_multisubmit
2dc1cf6 Minor fix to get query config test working on melvin
d3ab655 Merge pull request #2251 from jedwards4b/disable_file_caching
Modified files: git diff --name-status [previous_tag]
M config/config_tests.xml
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-24-2018
Tag: cime5.4.0-alpha.21
Answer Changes: None
Tests: scripts-regression-tests
Dependencies:
Brief Summary:
- Turn off XML file caching in test scheduler.
- Fix typo in cime_bisect.
- Cache file reads to avoid re-parsing XML files.
- Fix some minor log formatting issues.
- Fixed a broken hyperlink in the data ocean model rst documentation.
- Always want to see test-scheduler time taken.
- Query config update.
- Fix formatting of rst documentation for load balancing tool.
- Implement walltime stash to support more-accurate walltimes.
- Merge branch 'master' of github.com:ESMCI/cime.
- Hot fix for acme xsd error.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d2850d5 Merge pull request #2247 from ESMCI/jgfouca/turn_off_caching_in_testsched
29006c6 Fix typo in cime_bisect
263c909 Merge pull request #2243 from ESMCI/jgfouca/cache_file_reads
ace29c3 Merge pull request #2239 from jedwards4b/format_issues
367ca98 Merge pull request #2238 from bertinia/master
f52a005 Always want to see test-scheduler time taken
f272ecf Merge pull request #2236 from jedwards4b/query_config_update
39ac021 Merge pull request #2235 from ESMCI/sarich/fix-load-balance-docs
b978107 Merge pull request #2234 from ESMCI/jgfouca/walltime_optimization
52b22fa Merge branch 'master' of github.com:ESMCI/cime
b9e0c52 hot fix for acme xsd error
Modified files: git diff --name-status [previous_tag]
M config/acme/config_files.xml
M config/acme/machines/config_machines.xml
M config/cesm/config_files.xml
M doc/source/data_models/data-ocean.rst
M doc/source/misc_tools/load-balancing-tool.rst
M scripts/Tools/cime_bisect
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-16-2018
Tag: cime5.4.0-alpha.20
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Revert src/share/util/changes in shr_spfn_mod.F90
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b146127 revert changes in this file (failing pgi test)
Modified files: git diff --name-status [previous_tag]
M src/share/util/shr_spfn_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 01-16-2018
Tag: cime5.4.0-alpha.19
Answer Changes: None
Tests: code_checker, scripts_regression_tests
Dependencies:
Brief Summary:
- CPL user mods.
- Update slurm queueing for NERSC.
- Change grid in testlist schema to NMTOKEN.
- py3 pylint fix.
- Add minimal pgi compiler support cheyenne, fix an output error.
- Make doctest for get_current_branch more robust.
- Remove stale help section comments.
- Fix print statements that were corrupted by py3 changes.
- Updates for laramie.
- Fix K_TestCimeCase.test_cime_case_prereq for LSF machines.
- Fix regression test K_TestCimeCase.test_cime_case_test_custom_project.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
16766d6 Merge pull request #2231 from jedwards4b/CPL_USER_MODS
0722686 Merge pull request #2233 from ESMCI/fischer/nersc_cori
45e4895 Merge pull request #2232 from ekluzek/testlistschema
40a02fa Merge pull request #2230 from ESMCI/jedwards/py3pylintfix
6b8f1a8 Merge pull request #2229 from jedwards4b/add_pgi
06d3317 Merge pull request #2220 from ESMCI/jgfouca/make_branch_doctest_more_robust
7f4951f Merge pull request #2219 from ESMCI/jgfouca/remove_stale_help
37122e8 Merge pull request #2226 from ESMCI/jgfouca/improve_preview_run
1920d8b Merge pull request #2225 from jedwards4b/laramie_updates
c3a1141 Merge pull request #2224 from ESMCI/jgfouca/fix_cime_case_test_for_lsf
b968e77 Merge pull request #2223 from ESMCI/jgfouca/fix_regr_test
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_compsets.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/testlist.xsd
M scripts/Tools/preview_run
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_compsets.xml
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-10-2018
Tag: cime5.4.0-alpha.18
Answer Changes: Round Off, possibly Climate Changing
Tests:
Dependencies:
Brief Summary:
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
18358ce Merge pull request #2212 from ESMCI/jgfouca/branch-for-acme-split-2018-01-09
ddeb398 Merge pull request #2216 from jedwards4b/correct_bld_output
7f3c93b Merge pull request #2217 from jedwards4b/more_fortran_cleanup
f44bca3 Merge pull request #2213 from jedwards4b/more_fortran_cleanup
559d421 Merge pull request #2211 from jedwards4b/fixforxlf
d151642 Merge pull request #2179 from billsacks/fix_advdate
507b9dd Merge pull request #2158 from ESMCI/mvertens/dicemods
89015ca Merge pull request #2205 from ESMCI/jgfouca/remove_scans
3eb054d Merge pull request #2202 from jedwards4b/refactor_seq_diag_mod
cdb7b3f fix doctest for py3
5872dda Merge pull request #2208 from jedwards4b/py3fix
8e2319f Merge pull request #2206 from ESMCI/jgfouca/fix_desc_stride
e3cf1f3 Merge pull request #2198 from jedwards4b/more_atmocn_flux
cf9e427 Merge pull request #2204 from gold2718/lowresSEgrid
1bd046f Use https for cdash
bd9b5f1 Minor fixes for cdash interaction
a2ef582 Merge pull request #2201 from jedwards4b/fix_long_line
14176a0 Merge pull request #2192 from jedwards4b/reduce_fortran_warnings1
a44965e Merge pull request #2196 from ESMCI/jgfouca/remove_run_with_submit
ef10d62 Minor fix for ACME
7e28a21 Merge pull request #2148 from ESMCI/jgfouca/hide_xml_interface
05ba5c5 Merge pull request #2087 from ekluzek/addmachmodex
1ab0e78 Merge pull request #2193 from jedwards4b/always_set_baselineroot_in_tests
8a401cb Merge pull request #2189 from ESMCI/jgfouca/fix_melvin
d5e21de Merge pull request #2188 from ESMCI/jgfouca/fix_create_test_cesm_doc
7c607cb Merge pull request #2187 from ESMCI/jgfouca/max_task_fixes
ddb968b Merge pull request #2186 from ESMCI/jgfouca/improve_acme_cime_mgt
295e91c Merge pull request #2184 from jedwards4b/indent_consistantly
Modified files: git diff --name-status [previous_tag]
======================================================================
======================================================================
Originator: Chris Fischer
Date: 1-4-2018
Tag: cime5.4.0-alpha.17
Answer Changes: Round Off allactive
Tests: ERS_Ld7.f19_g17.B1850.hobart_pgi.allactive-defaultio
scripts_regression_tests
Dependencies:
Brief Summary:
- Add flux convergence criteria.
- Pass CIMEROOT to CMake unit test builds.
- scripts_regression_tests.py should use values in .cime/config if provided.
- Testing/multiinst baselines.
- Fix pylint error that I introduced in #2168.
- Generalize some paths to support a standalone CISM checkout.
- Revert to previous cheyenne gnu environment.
- Y10k fix.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1b4fa36 Merge pull request #2180 from jedwards4b/flux_convergence
6a07ef1 Merge pull request #2176 from billsacks/run_tests_pass_cimeroot
8932a90 Merge pull request #2173 from jedwards4b/srt_use_cimeconfig
5a9d270 Merge pull request #2170 from mnlevy1981/testing/multiinst_baselines
cade91d Merge pull request #2169 from billsacks/fix_pylint_error
9e6cee6 Merge pull request #2168 from billsacks/cism_standalone
d59c285 Merge pull request #2167 from billsacks/backout_cheyenne_gnu
abc6354 Merge pull request #2145 from jedwards4b/y10k_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/dice/dice_comp_mod.F90
M src/components/data_comps/dlnd/dlnd_comp_mod.F90
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/data_comps/drof/drof_comp_mod.F90
M src/components/data_comps/dwav/dwav_comp_mod.F90
M src/drivers/mct/cime_config/namelist_definition_drv.xml
A src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/y100k/README
A src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/y100k/shell_commands
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
M src/share/test/unit/CMakeLists.txt
A src/share/test/unit/shr_cal_test/CMakeLists.txt
A src/share/test/unit/shr_cal_test/test_shr_cal.pf
M src/share/util/CMakeLists.txt
M src/share/util/shr_cal_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-22-2017
Tag: cime5.4.0-alpha.16
Answer Changes: None
Tests: scripts_regression_tests.py
aux_clm test suite
scripts_regression_tests.py py2 and py3
Dependencies:
Brief Summary:
- Fix pylint issue.
- Allows available and default MPILIBS to be specified per compiler.
- Find test dir must use case object to fully resolve vars.
- Always use GLC_NEC=10 for CLM45/CLM5; remove tropicAtl grid in CESM.
- Updates for nersc systems.
- DATM and DROF jra55 mode, new grids tx0.1v3, TL319, JRA025.
- Fix typo in template.
- Remove unused doctests.
- Add the batch jobid to the lid.
- Fix typo of xcpl_comps dir in buildlib.csm_share.
- Fix max tasks for homebrew.
- Use the encoding flag to open in py3 to set utf-8.
User interface changes:
- Remove dead --test options.
PR summary: git log --oneline --first-parent [previous_tag]..master
d1723aa fix pylint issue
d7d96b5 Merge pull request #2160 from jedwards4b/allowmultiplempilibs
2a53df8 Merge pull request #2156 from jedwards4b/findtestdir
e127d7e Merge pull request #2150 from billsacks/always_glcmec
39d7442 Merge pull request #2147 from jedwards4b/machine_updates
c3780a5 Merge pull request #2136 from ESMCI/altuntas/jra55
5ff8d82 fix typo in template
ff04547 Merge pull request #2144 from ESMCI/jgfouca/remove_unused_doctest
c072407 Merge pull request #2141 from jedwards4b/jobid_in_lid
46627b1 Merge pull request #2143 from ESMCI/agsalin/xcpl_dir_fix
60f3603 fix max tasks for homebrew
4729f6a Merge pull request #2139 from jedwards4b/utf8_encoding
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
M config/acme/machines/template.st_archive
M config/cesm/config_grids.xml
M config/cesm/machines/Depends.intel
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.st_archive
M config/xml_schemas/config_machines.xsd
M doc/source/data_models/data-atm.rst
M doc/source/data_models/data-river.rst
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.qstatus
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/cs.status
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_acme_tests
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/preview_run
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/standard_script_setup.py
M scripts/Tools/update_acme_tests
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_test
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/utils.py
M scripts/manage_pes
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/datm_shr_mod.F90
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M tools/configure
M tools/load_balancing_tool/load_balancing_submit.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-14-2017
Tag: cime5.4.0-alpha.15
Answer Changes: None
Tests: external pio2 test suite using pnetcdf/1.9.0 candidate as well as
pnetcdf/1.8.1 and netcdf 4.4.1.1
scrtips_regression_tests.py
Dependencies:
Brief Summary:
- PIO2 update.
- Replace fancy quotes with standard ones.
- Add some debug info and correct PYTHON.
- Allow python to be specified in environment.
- Avoid continue run if resubmit_sets_continue_run is false.
- PIO1 update.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
1fec3c1 Merge pull request #2125 from jedwards4b/pio2_update
851918d replace fancy quotes with standard ones
fdd3ddf add some debug info and correct PYTHON
994a250 Merge pull request #2138 from jedwards4b/python_path_fix
e189ba6 Merge pull request #2133 from jedwards4b/continue_run_check
261cb8a Merge pull request #2124 from jedwards4b/pio1_update
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case_run.py
M scripts/tests/CMakeLists.txt
M src/components/data_comps/docn/cime_config/config_component.xml
M src/externals/pio1/pio/pio_types.F90
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/doc/source/mach_walkthrough.txt
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/pio_types.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-11-1017
Tag: cime5.4.0-alpha.14
Answer Changes: None
Tests: code_checker, by-hand, scripts_regression_tests.py
scripts_regression_tests.py (with python 3.6.2)
Dependencies:
Brief Summary:
- No iteritems method in python3, use six compatibility library.
- Fix couple mistakes introduced by ACME split, Pylint errors and timing problem for cesm.
- Minor bugfix, root arugment was ignored.
- Jgfouca/branch for acme split 12-08-2017.
- Add debug print statements to describe current workload.
- Fix issue in declaration.
- Provide access functions for the setting of pio_rearranger variables.
- Move GMAKE and GMAKE_J options to env_run so that changing them doesn't
require a rebuild.
- Fix processor overflow in create_test.
- Miscellaneous tool improvement.
- Add ability to customize CaseStatus success message for a phase.
- DOCN mode fix.
- Fix bug in compare namelists.
- Fixes a memory leak in gptl.
User interface changes:
- simple-py-prof sets PYTHONPATH for you, list_acme_tests assumes you want
to list tests
- jobid now added to CaseStatus case_submit entry.
PR summary: git log --oneline --first-parent [previous_tag]..master
f48881a Merge pull request #2130 from jedwards4b/py3_compatibility
90ffcf7 Merge pull request #2129 from ESMCI/jgfouca/fix_pylint_and_cesm_timing
036ac18 Merge pull request #2127 from ESMCI/jgfouca/xml_bugfix
9dfce92 Merge pull request #2126 from ESMCI/jgfouca/branch-for-acme-split-12-08-2017-pr
9c01c47 Merge pull request #2122 from ESMCI/jgfouca/create_test_add_workload_output
c0ce363 fix issue in declaration
f99b947 hot fix for pr 2121
bc6f180 Merge pull request #2120 from jedwards4b/mv_gmake_to_run
1dd0b61 Merge pull request #2119 from ESMCI/jgfouca/cime/fix_create_test_proc_overflow
0934a32 Merge pull request #2117 from ESMCI/jgfouca/misc_improve_tools
530c337 Merge pull request #2113 from ESMCI/jgfouca/custom_success_msg_case_status
cb0f58a Merge pull request #2114 from jedwards4b/DOCN_MODE_fix
148a8a9 Merge pull request #2111 from ESMCI/jgfouca/compare_nml_bugfix
2789236 Merge pull request #2110 from ESMCI/mfdeakin-sandia/gptl/memleak
Modified files: git diff --name-status [previous_tag]
M .gitignore
M ChangeLog
M config/acme/allactive/config_compsets.xml
M config/acme/allactive/config_pesall.xml
M config/acme/config_grids.xml
A config/acme/machines/Depends.summitdev.pgiacc
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
A config/acme/machines/syslog.theta
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
M doc/source/users_guide/porting-cime.rst
M scripts/Tools/Makefile
M scripts/Tools/cime_bisect
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_acme_tests
M scripts/Tools/simple-py-prof
M scripts/create_test
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/acme_cime_mgmt.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
M scripts/tests/user_mods_test3/shell_commands
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/shr/seq_flds_mod.F90
M src/share/timing/gptl.c
M src/share/util/shr_pio_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-04-2017
Tag: cime5.4.0-alpha.13
Answer Changes: None
Tests: scripts_regression_tests.py, SMS_P8x2.f19_g16.X.yellowstone_intel
Dependencies:
Brief Summary:
- BUILD_THREADED needs to be set if any nthrds > 1.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
307251e Merge pull request #2106 from jedwards4b/nthrds_sets_build_threaded
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/case_setup.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-03-2017
Tag: cime5.4.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Fix gptl threaded build, batch change for cheyenne.
- Update CIME RST documentation.
- Correct path for includes used in build.
- Check for unicode in expect().
- Separate liq and ice in glc2ocn mapping, and fix glc2ocn mapping bug.
User interface changes:
-Splits GLC2OCN_RMAPNAME xml variable into
GLC2OCN_LIQ_RMAPNAME and GLC2OCN_ICE_RMAPNAME, and similarly for
GLC2OCN_RMAPTYPE
PR summary: git log --oneline --first-parent [previous_tag]..master
6dd6f09 Merge pull request #2105 from jedwards4b/gptl_threaded_build_fix
92f73e3 Merge pull request #2078 from bertinia/master
5dc7e19 Merge pull request #2101 from jedwards4b/mpiserial_bldfix
486efd6 Merge pull request #2097 from ESMCI/sarich/fix-buildexe-unicode
dd525f9 Merge pull request #2066 from billsacks/glc2ocn_separate_liq_ice
Modified files: git diff --name-status [previous_tag]
M .gitignore
M config/acme/config_grids.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M doc/source/conf.py
M doc/source/data_models/data-ocean.rst
M doc/source/index.rst
M doc/source/misc_tools/index.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/optimizing-processor-layout.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/testing.rst
M doc/source/xml_files/acme.rst
M doc/source/xml_files/drivers.rst
M scripts/Tools/Makefile
M scripts/lib/CIME/utils.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mpi-serial
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/prep_ocn_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-22-2017
Tag: cime5.4.0-alpha.11
Answer Changes: None
Tests: scripts_regression_tests.pr
Dependencies:
Brief Summary:
- GPTL build threaded, makefile cleanup.
- Changes in merged Makefile to satisfy dependancies thus making rebuild faster.
- Fix run_sub_or_cmd in the case where a cmd is run and log is None.
- Enable ldsta case.submit to be run twice.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5ea8d6b Merge pull request #2092 from jedwards4b/gptl_build_threaded
4361a51 Merge pull request #2090 from jedwards4b/makefaster
ca4c1f9 Merge pull request #2086 from ESMCI/jgfouca/run_sub_no_log
5791d32 Merge pull request #2084 from ESMCI/mfdeakin-sandia/ldsta/rerun
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/Makefile
M scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/utils.py
M src/build_scripts/buildlib.gptl
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-17-2017
Tag: cime5.4.0-alpha.10
Answer Changes: None
Tests: cime_developer, scripts_regression_test
code_checker, create_test cime_developer
SMS.f09_g17.B1850.yellowstone_intel
cime_tiny
Dependencies:
Brief Summary:
- Add LDSTA to cime_developer test suite.
- Major refactor of baseline handling.
- Add bless logging capability.
- Fix clm build.
- Add function to ensure correct bld logging.
- Short term archiver last date option test.
- Redo mct and mpi-serial buildlib scripts in python.
- Add a list of test types to the users guide.
- Fix MCC test on master.
- Fix csm_build, remove debug print statement.
- Cleanup gptl build, replace perl buildlib.csm_share with python.
- Convert buildlib.gptl to python and call it and the buildlib.pio as subroutines.
- Run sub logging fixes.
- Fix redirection for run_sub to include stderr.
- Separate DATA_ASSIMILATION flag by component and add to Fortran infodata.
- Add unit tests of compare_two's handling of pass/fail in comparison.
- Fixes incorrect timer event name in data runoff model.
- Update from ACME 11-13-2017.
- Fix pylint issue.
- Locked files handled BUILD_COMPLETE better.
- Add optional COSTPES_PER_NODE.
- Switch melvin to use officially supported pfunit.
- USER_REQUESTED_ vars should go in env_batch.
- Use_existing needs to set FAIL states back to PEND.
- Add create_test options to config for user tuned defaults.
- Jgfouca/branch for acme split 11-07-2017 pr.
- Improve email handling.
- Add retry capability to create_test.
- Convert line to utf-8.
- Change paths to case2 rundir and exeroot.
User interface changes:
- Better defaults for bless_test_results and compare_test_results.
- New bless_log file in baseline dirs.
- Allow multiple -m args to case.submit. Allows user to put email settings in .cime/config.
- New --retry option to create_test.
PR summary: git log --oneline --first-parent [previous_tag]..master
6dd002f Merge pull request #2074 from ESMCI/mfdeakin-sandia/cime_developer/ldsta
0c4ffa7 Merge pull request #2079 from ESMCI/jgfouca/major_baseline_refactor
5ac2f90 Merge pull request #2069 from ESMCI/jgfouca/add_bless_logs_2
c80333f Merge pull request #2076 from jedwards4b/clmbuildfix
09e6061 Merge pull request #2073 from ESMCI/jgfouca/fix_bld_logging
09aadd0 Merge pull request #2071 from ESMCI/mfdeakin-sandia/test_sta_last_date
8765c9c Merge pull request #2072 from jedwards4b/rebuildmct
92f74f8 Merge pull request #2062 from ESMCI/fischer/testtype_doc
690e7f7 fix MCC test on master
a3d1554 fix csm_build, remove debug print statement
71fbd56 Merge pull request #2067 from jedwards4b/rebuildlibs
27fbbbd Merge pull request #2065 from jedwards4b/run_sub_logging_demo
9bea9a4 Merge pull request #2064 from ESMCI/jgfouca/run_sub_logging_fixes
7e1c8b5 Merge pull request #2055 from ESMCI/jgfouca/run_sub_logging_fixes
53e1ddf Merge pull request #2039 from jedwards4b/data_assimilation_to_fortran_try1
559c50a Merge pull request #2060 from billsacks/compare_two_comparison_unit_tests
da29a73 Merge pull request #2054 from ESMCI/bishtgautam/drof
9442c93 Merge pull request #2052 from ESMCI/jgfouca/branch-for-acme-split-11-13-2017-pr
93461b6 fix pylint issue
52c1ad4 Merge pull request #2051 from jedwards4b/rebuild_after_error
d713717 Merge pull request #2050 from jedwards4b/COST_PER_NODE
134cb8f Merge pull request #2049 from ESMCI/jgfouca/switch_melvin_to_offical_pfunit
5de7b7e Merge pull request #2047 from jedwards4b/fix_for_user_requested_flags
04e56d2 Merge pull request #2045 from ESMCI/jgfouca/fix_use_existing
e091e2a Merge pull request #2042 from jedwards4b/create_test_options_in_config
c44fce4 Merge pull request #2033 from ESMCI/jgfouca/branch-for-acme-split-11-07-2017-pr
d03cde1 Merge pull request #2035 from ESMCI/jgfouca/improve_email_handling
426f61c Merge pull request #2034 from ESMCI/jgfouca/create_test_retry
7c54009 Merge pull request #2038 from jedwards4b/fix_dae_test
daee7ac Merge pull request #2036 from billsacks/compare2_fix_dirs
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_pesall.xml
M config/acme/config_archive.xml
M config/acme/machines/Depends.cetus
M config/acme/machines/Depends.intel
A config/acme/machines/Depends.intel18
M config/acme/machines/Depends.mira
M config/acme/machines/Depends.summitdev.ibm
M config/acme/machines/Depends.titan.pgi
M config/acme/machines/Depends.titan.pgiacc
D config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
D config/acme/machines/mkDepends
D config/acme/machines/mkSrcfiles
M config/acme/machines/syslog.cori-haswell
M config/acme/machines/syslog.cori-knl
M config/acme/machines/syslog.edison
M config/acme/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
D config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
D config/cesm/machines/mkDepends
D config/cesm/machines/mkSrcfiles
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/env_mach_specific.xsd
M doc/source/users_guide/testing.rst
A scripts/Tools/Makefile
A scripts/Tools/acme_cime_merge
M scripts/Tools/acme_cime_split
M scripts/Tools/bless_test_results
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/compare_test_results
A scripts/Tools/mkDepends
A scripts/Tools/mkSrcfiles
M scripts/Tools/xmlchange
M scripts/create_test
M scripts/lib/CIME/SystemTests/dae.py
A scripts/lib/CIME/SystemTests/ldsta.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
A scripts/lib/acme_cime_mgmt.py
M scripts/lib/update_acme_tests.py
M scripts/tests/run_acme_ctest/runAcmeTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/components/data_comps/desp/cime_config/namelist_definition_desp.xml
M src/components/data_comps/drof/drof_comp_mod.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/share/timing/ChangeLog
M src/share/timing/Makefile
M src/share/timing/f_wrappers.c
M src/share/timing/gptl.c
M src/share/timing/gptl.inc
M src/share/timing/perf_mod.F90
M src/share/timing/private.h
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-08-2017
Tag: cime5.4.0-alpha.09
Answer Changes: None
Tests: IRT.T62_g17.C1850ECO.yellowstone_intel.pop-default
code_checker, seq by-hand and with re-run
Dependencies:
Brief Summary:
- Allow undated history files to be archived.
- Convert SEQ to use compare-two.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ce40669 Merge pull request #2037 from jedwards4b/fix_for_undated_history_file_archiving
280e006 Merge pull request #2030 from ESMCI/jgfouca/seq_cmpr_two
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/case_st_archive.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-07-2017
Tag: cime5.4.0-alpha.08
Answer Changes: None
Tests: Hand test B1850
Dependencies:
Brief Summary:
- Handle case when cmdargs is not a list
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
fc72203 Merge pull request #2032 from jedwards4b/cmdargs_fix
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/utils.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-06-2017
Tag: cime5.4.0-alpha.07
Answer Changes: None
Tests: scripts_regression_tests.pr
manual checks of mapping files generated with runoff_to_ocn tool and run of check_map.sh tool
Tested runoff_map tool with a source file
run_merge_mapping_files.sh
code_checker
tests with casename try+45
Dependencies:
Brief Summary:
- Improve interface to external scripts PRERUN_SCRIPT, POSTRUN_SCRIPT, DATA_ASSIMILATION_SCRIPT.
- Better error message for compsets.
- For runoff map: fix mask_b and frac_b in nearest neighbor map.
- If area units on source grid file are in sq deg, convert to sq radians.
- Handle the case where no points are mapped to marginal seas.
- Add function to rebuild dependencies.
- Make srt change backward compatible.
- Allow overrides in config batch.
- Fix machines option to srt and unitialzed var.
- Fix cprnc build on mac.
- Add NLCOMP warning if comparison fails and RUN phase is complete.
- Remove string formatting from code-path that checks python version.
- Bluewaters update.
- Fix for ACME MPAS builds.
- Add support for selecting different driver.
- Fix critical bug with py3 str handling.
- Only report mem and tput errors once.
- Fix slurm output fields.
- Fix critical problems found during ACME/ESMCI integration.
- Handle pattern match chars like + in casename.
- Add check for a batch system when testing user prerequisites.
- Fix batch prepend test.
- py3 fixes
- Fix COST_PES and TOTALPES for titan (aprun).
- Add support for arbitrary prerequisites to case.submit.
- Updates for NAS pleiades systems.
User interface changes:
- Add --clean-depends to case.build, this argument can take a component list and will
clean all components if one is not provided.
- Some additional output from nl comp code in some cases
- --driver added to create_newcase, new _V$driver testopt.
PR summary: git log --oneline --first-parent [previous_tag]..master
0027c84 Merge pull request #2005 from jedwards4b/external_process_interface
a84b875 Merge pull request #2027 from jedwards4b/better_errormsg_for_compsets
184d7de Merge pull request #2013 from billsacks/runoff_nn_fix_mask
28f74aa Merge pull request #2022 from billsacks/runoff_convert_sq_degrees
4793fd8 Merge pull request #2007 from billsacks/runoff_map_no_marginal_ocean
5e79775 Merge pull request #2026 from jedwards4b/clean_depends
2b79440 make srt change backward compatible
a5a6949 Merge pull request #2025 from jedwards4b/allow_overrides_in_config_batch
cd181bb Merge pull request #2023 from jedwards4b/fix_unitialized_var
2978605 Merge pull request #2021 from billsacks/fix_cprnc_make
2d39e61 Merge pull request #2016 from ESMCI/jgfouca/add_nl_comp_warning
32375b4 Merge pull request #2017 from ESMCI/jgfouca/fix_cime_for_old_python
f3493fa Merge pull request #2015 from jedwards4b/bluewaters_update1
33ddbe8 Merge pull request #2008 from ESMCI/jgfouca/fix_acme_mpas_builds
f99c174 Merge pull request #1988 from ESMCI/jgfouca/add_driver_selection_support
33597f4 Merge pull request #2003 from ESMCI/jgfouca/py3_str_unicode_confusion
9202dbb Merge pull request #1998 from ESMCI/jgfouca/only_report_memory_tput_errors_once
09b7b8e Merge pull request #2001 from ESMCI/jgfouca/fix_slurm_output_fields
e67caa2 Merge pull request #1999 from ESMCI/jgfouca/misc_fixes
abf1e91 Merge pull request #1997 from jedwards4b/handle_special_chars_in_casename
952c5fd Merge pull request #1996 from ESMCI/mfdeakin-sandia/case_submit_prereq/fix_test
ef08588 fix batch prepend test
4226f42 py3 fixes
e959bdc Merge pull request #1990 from ESMCI/jgfouca/titan_fixes_and_misc
5f7359b Merge pull request #1753 from ESMCI/mfdeakin-sandia/case_submit/prereq
b8190ea Merge pull request #1983 from ESMCI/jgfouca/merge_st_archive
Modified files: git diff --name-status [previous_tag]
M config/acme/config_files.xml
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_batch.xsd
M doc/source/users_guide/running-a-case.rst
M scripts/Tools/case.build
M scripts/Tools/case.submit
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_cmpgen_namelists.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/prep_ocn_mod.F90
M tools/cprnc/Makefile
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/ncl/merge_mapping_files.ncl
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/main.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/map_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-25-2017
Tag: cime5.4.0-alpha.06
Answer Changes: None
Tests: scripts_regression_tests.py
cesm F cases
Dependencies:
Brief Summary:
- Update mpt and pnetcdf on cheyenne.
- Fix several data component issues.
- Resolve compset issue.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
aac772f Merge pull request #1992 from jedwards4b/cheyenne_mpt_update
4e7bd64 Merge pull request #1987 from ESMCI/mvertens/fix_datacomps
dd2734a Merge pull request #1981 from jedwards4b/resolve_compset_issue
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/case_st_archive.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/data_comps/drof/cime_config/buildnml
D src/components/data_comps/dshare/shr_dmodel_mod.F90
D src/components/data_comps/dshare/shr_strdata_mod.F90
D src/components/data_comps/dshare/shr_stream_mod.F90
D src/components/data_comps/dshare/shr_tInterp_mod.F90
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_archive.xml
A src/share/streams/shr_dmodel_mod.F90
A src/share/streams/shr_strdata_mod.F90
A src/share/streams/shr_stream_mod.F90
A src/share/streams/shr_tInterp_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-25-2017
Tag: cime5.4.0-alpha.05
Answer Changes: None
Tests: scripts_regression_tests
ne16_ne16_mg17 alias (compset QPC6)
ERS.f09_g17.B1850.cheyenne_intel.allactive-defaultio
Dependencies:
Brief Summary:
- Add mapping files for T42_T42_mg17.
- Remove empty proxy tag from anlworkstation.
- Updates for testreporter and remove AWAV from testlist.
- Bring in E3SM cime changes for past 3 months.
- Adjustments for new CAM-SE dycore.
- Make sure user changes to wallclock/queue are not lost.
- Minor cleanup of PEM test.
- Add COMP_ROOT_DIR_ variables so that a component can be moved with the
change of a single cime variable.
- Set correct domain files for ne16np4.
- Add LBL Machines.
- Data model documentation edits.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
299f1ab Merge pull request #1991 from ESMCI/fischer/T42_T42_mg17
a8cd748 Merge pull request #1989 from ESMCI/dqwu/anlworkstation-remove-proxy-tag
de4df65 Merge pull request #1984 from ESMCI/fischer/TestReporter
0c1b306 Merge pull request #1970 from ESMCI/jgfouca/branch-for-acme-split-10-17-2017-pr
4f201fe Merge pull request #1979 from gold2718/seUpdates
3d509a2 Merge pull request #1978 from ESMCI/jgfouca/fix_custom_walltime
14d71e9 Merge pull request #1976 from billsacks/pem_cleanup
0e5cee1 Merge pull request #1968 from jedwards4b/add_comp_root_dir_vars
a1a2c14 Merge pull request #1973 from gold2718/seDomainFiles
48c6fa8 Merge pull request #1956 from ekluzek/addlblmachs
a915609 Merge pull request #1969 from billsacks/data_model_edits
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_compsets.xml
M config/acme/allactive/config_pesall.xml
M config/acme/config_archive.xml
M config/acme/config_files.xml
M config/acme/config_grids.xml
D config/acme/machines/Depends.corip1
M config/acme/machines/Depends.intel
D config/acme/machines/Depends.intel14
D config/acme/machines/Depends.intelmic
D config/acme/machines/Depends.intelmic14
A config/acme/machines/Depends.summitdev.ibm
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/template.st_archive
A config/acme/testmods_dirs/allactive/clm/bgcinterface/user_nl_clm
A config/acme/testmods_dirs/allactive/clm/rd/user_nl_clm
A config/acme/testmods_dirs/allactive/clm/vst/user_nl_clm
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/config_tests.xml
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
M config/xml_schemas/env_mach_specific.xsd
M doc/source/data_models/data-atm.rst
M doc/source/data_models/data-lnd.rst
M doc/source/data_models/data-model-science.rst
M doc/source/data_models/data-ocean.rst
M doc/source/data_models/data-river.rst
M doc/source/data_models/data-seaice.rst
M doc/source/data_models/data-wave.rst
M doc/source/data_models/design-details.rst
M doc/source/data_models/input-streams.rst
M doc/source/data_models/introduction.rst
A scripts/Tools/acme_cime_split
M scripts/Tools/jenkins_generic_job
M scripts/Tools/preview_run
M scripts/Tools/testreporter.py
M scripts/Tools/xmlchange
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/utils.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
A scripts/tests/run_acme_ctest/CMakeLists.txt
A scripts/tests/run_acme_ctest/CTestConfig.cmake
A scripts/tests/run_acme_ctest/runAcmeTest_template.sh
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
D src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML_Lite.3
D src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML_Lite_Element.3
D src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite.3
D src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite_Element.3
M src/share/timing/GPTLget_memusage.c
M src/share/timing/GPTLprint_memusage.c
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_mem_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_reprosum_mod.F90
M utils/perl5lib/compilers_translation_tool.pl
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-16-2017
Tag: cime5.4.0-alpha.04
Answer Changes: None
Tests: scripts_regression_tests.py code_checker
Dependencies:
Brief Summary:
- Cleanup of the compvar implementation.
- Refactor CPLHIST mode and add DATM CPLHIST topo capability.
- Fix py3 for erio test.
- Fix some issues found in type conversion.
- Port to python3 while maintaining compatibility with python 2.7
- Remove developers table on README.md.
- Load balancing tool mods.
- Add auto-normalization to case_diff.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
af429bd Merge pull request #1965 from jedwards4b/iscompvar_cleanup
16adad1 Merge pull request #1950 from ESMCI/mvertens/cplhist_topo
02cc2fd Fix py3 for erio test
116e6e7 Merge pull request #1962 from jedwards4b/convert_to_string_fix
c5cf2af PR #1949 jedwards4b/py3_port_branch
c6cf37e Merge pull request #1926 from ESMCI/rljacob/update-readme
128625f Merge pull request #1942 from jedwards4b/load-balancing-tool-mods
6f43f73 Merge pull request #1958 from ESMCI/jgfouca/case_diff_auto_normalize
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M LICENSE.TXT
D README
M README.md
D README.unit_testing
M config/acme/allactive/config_compsets.xml
D config/acme/allactive/config_compsets.xml.cime2
D config/acme/allactive/config_pes.xml
D config/acme/allactive/config_pes.xml.cime2
M config/acme/allactive/config_pesall.xml
D config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
M config/acme/config_archive.xml
M config/acme/config_files.xml
M config/acme/config_grids.xml
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_batch.xsd
M config/acme/machines/config_compilers.xml
D config/acme/machines/config_lt_archive.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
A config/acme/machines/syslog.anvil
M config/acme/machines/syslog.cetus
M config/acme/machines/syslog.cori-haswell
M config/acme/machines/syslog.cori-knl
M config/acme/machines/syslog.edison
M config/acme/machines/syslog.mira
M config/acme/machines/syslog.titan
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
D config/acme/machines/template.lt_archive
M config/acme/machines/template.st_archive
M config/acme/machines/userdefined_laptop_template/config_compilers.xml
M config/acme/machines/userdefined_laptop_template/config_machines.xml
A config/acme/testmods_dirs/allactive/cam/cosplite/user_nl_cam
A config/acme/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
A config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/clm/eca/user_nl_clm
A config/acme/testmods_dirs/allactive/clm/fates/user_nl_clm
A config/acme/testmods_dirs/allactive/force_netcdf_pio/shell_commands
A config/acme/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
D config/cesm/machines/Depends.goldbach
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
D config/cesm/machines/config_lt_archive.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
D config/cesm/machines/template.lt_archive
M config/cesm/machines/template.st_archive
M config/cesm/machines/userdefined_laptop_template/README.md
M config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M config/cesm/machines/userdefined_laptop_template/config_machines.xml
M config/config_headers.xml
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_compsets.xsd
M config/xml_schemas/config_grids_v2.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
M config/xml_schemas/config_pes.xsd
M config/xml_schemas/entry_id_base.xsd
A config/xml_schemas/entry_id_base_version3.xsd
A config/xml_schemas/entry_id_version3.xsd
A config/xml_schemas/env_batch.xsd
A config/xml_schemas/env_mach_pes.xsd
A config/xml_schemas/env_mach_specific.xsd
A doc/.gitignore
A doc/Makefile
A doc/README
A doc/source/README
A doc/source/Tools_user/index.rst.template
A doc/source/_static
A doc/source/build_cpl/adding-components.rst
A doc/source/build_cpl/index.rst
A doc/source/build_cpl/introduction.rst
A doc/source/conf.py
A doc/source/data_models/data-atm.rst
A doc/source/data_models/data-lnd.rst
A doc/source/data_models/data-model-science.rst
A doc/source/data_models/data-ocean.rst
A doc/source/data_models/data-river.rst
A doc/source/data_models/data-seaice.rst
A doc/source/data_models/data-wave.rst
A doc/source/data_models/design-details.rst
A doc/source/data_models/index.rst
A doc/source/data_models/input-namelists.rst
A doc/source/data_models/input-streams.rst
A doc/source/data_models/introduction.rst
A doc/source/driver_cpl/bit-for-bit-flag.rst
A doc/source/driver_cpl/budgets.rst
A doc/source/driver_cpl/cplug-02.1-figx1.jpg
A doc/source/driver_cpl/design.rst
A doc/source/driver_cpl/driver_threading_control.rst
A doc/source/driver_cpl/grids.rst
A doc/source/driver_cpl/history-and-restarts.rst
A doc/source/driver_cpl/implementation.rst
A doc/source/driver_cpl/index.rst
A doc/source/driver_cpl/initialization-and-restart.rst
A doc/source/driver_cpl/introduction.rst
A doc/source/driver_cpl/multi-instance.rst
A doc/source/driver_cpl/namelist-overview.rst
A doc/source/driver_cpl/time-management.rst
A doc/source/glossary/index.rst
A doc/source/index.rst
A doc/source/misc_tools/index.rst
A doc/source/misc_tools/load-balancing-tool.rst
A doc/source/users_guide/adding-cases.rst
A doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/case-basics.rst
A doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/cloning-a-case.rst
A doc/source/users_guide/create-a-case.rst
A doc/source/users_guide/customizing-a-case.rst
A doc/source/users_guide/index.rst
A doc/source/users_guide/introduction-and-overview.rst
A doc/source/users_guide/multi-instance.rst
A doc/source/users_guide/optimizing-processor-layout.rst
A doc/source/users_guide/porting-cime.rst
A doc/source/users_guide/running-a-case.rst
A doc/source/users_guide/setting-up-a-case.rst
A doc/source/users_guide/testing.rst
A doc/source/users_guide/troubleshooting.rst
A doc/source/users_guide/unit_testing.rst
A doc/source/users_guide/use_cases/basics-a-basic-example.rst
A doc/source/users_guide/use_cases/basics-mpi-example.rst
A doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
A doc/source/users_guide/use_cases/use-cases.rst
A doc/source/what_cime/index.rst
A doc/source/xml_files/acme.rst
A doc/source/xml_files/atmosphere.rst
A doc/source/xml_files/cesm.rst
A doc/source/xml_files/common.rst
A doc/source/xml_files/components.rst
A doc/source/xml_files/drivers.rst
A doc/source/xml_files/esp.rst
A doc/source/xml_files/index.rst
A doc/source/xml_files/land.rst
A doc/source/xml_files/landice.rst
A doc/source/xml_files/ocean.rst
A doc/source/xml_files/river.rst
A doc/source/xml_files/seaice.rst
A doc/source/xml_files/wave.rst
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M src/externals/pio2/tests/cunit/test_pioc.c
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M src/externals/pio2/tests/cunit/test_pioc_unlim.c
A src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/cunit/test_shared.c
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M src/externals/pio2/tests/general/ncdf_get_put.F90.in
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_fillval.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M src/share/test/unit/CMakeLists.txt
A src/share/test/unit/mock/README
M src/share/test/unit/mock/shr_sys_mod.nompi_abortthrows.F90
A src/share/test/unit/shr_abort_test/CMakeLists.txt
A src/share/test/unit/shr_abort_test/README
A src/share/test/unit/shr_abort_test/test_shr_abort.pf
M src/share/test/unit/shr_assert_test/CMakeLists.txt
M src/share/test/unit/shr_infnan_test/CMakeLists.txt
M src/share/test/unit/shr_infnan_test/test_infnan.F90
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M src/share/test/unit/shr_string_test/test_shr_string.pf
M src/share/timing/COPYING
M src/share/unit_test_stubs/README
M src/share/unit_test_stubs/pio/pio.F90.in
A src/share/unit_test_stubs/util/CMakeLists.txt
A src/share/unit_test_stubs/util/README
A src/share/unit_test_stubs/util/shr_abort_mod.abortthrows.F90
M src/share/util/CMakeLists.txt
M src/share/util/mct_mod.F90
A src/share/util/shr_abort_mod.F90
D src/share/util/shr_dmodel_mod.F90
M src/share/util/shr_mct_mod.F90
M src/share/util/shr_pcdf_mod.F90
M src/share/util/shr_pio_mod.F90
D src/share/util/shr_strdata_mod.F90
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M src/share/util/shr_string_mod.F90
M src/share/util/shr_sys_mod.F90
D src/share/util/shr_tInterp_mod.F90
M tools/Readme.configure
M tools/configure
M tools/cprnc/CMakeLists.txt
M tools/cprnc/README
M tools/cprnc/summarize_cprnc_diffs
M tools/load_balancing_tool/README
D tools/load_balancing_tool/code/cesm_scaling.gplot
D tools/load_balancing_tool/code/create_dataFile.pl
D tools/load_balancing_tool/code/f02_peList.txt
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D tools/load_balancing_tool/code/fv_model.run
D tools/load_balancing_tool/code/fv_second_pass.pl
D tools/load_balancing_tool/code/get_cesm_times.pl
D tools/load_balancing_tool/code/load_balance.pl
D tools/load_balancing_tool/code/merge.py
D tools/load_balancing_tool/code/model.data
D tools/load_balancing_tool/code/model.mod
D tools/load_balancing_tool/code/model.run
D tools/load_balancing_tool/code/neos.py
D tools/load_balancing_tool/global_variables.csh
A tools/load_balancing_tool/layouts.py
A tools/load_balancing_tool/load_balancing_solve.py
A tools/load_balancing_tool/load_balancing_submit.py
A tools/load_balancing_tool/optimize_model.py
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A tools/load_balancing_tool/tests/__init__.py
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A tools/load_balancing_tool/tests/timing/timing_1
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M tools/mapping/check_maps/README
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/INSTALL
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M tools/mapping/gen_mapping_files/README
A tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
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M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
M tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M tools/mapping/gen_mapping_files/runoff_to_ocn/README
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M tools/mapping/map_field/INSTALL
M tools/mapping/map_field/src/Makefile
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A tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.sh
D tools/statistical_ensemble_test/ncl_library/Zscore.ncl
D tools/statistical_ensemble_test/ncl_library/area_avg.ncl
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M tools/statistical_ensemble_test/single_run.sh
D tools/statistical_ensemble_test/test_run_against_ensemble.ncl
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D tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/test_interpolate_point.pf
D tools/unit_testing/Examples/test_list.xml
D tools/unit_testing/README
D tools/unit_testing/python/.gitignore
D tools/unit_testing/python/comparable.py
D tools/unit_testing/python/environment.py
D tools/unit_testing/python/machine_setup.py
D tools/unit_testing/python/printer.py
D tools/unit_testing/python/test_environment.py
D tools/unit_testing/python/test_xml_test_list.py
D tools/unit_testing/python/test_xml_utils.py
D tools/unit_testing/python/xml_test_list.py
D tools/unit_testing/python/xml_utils.py
D tools/unit_testing/run_tests.py
M tools/utils/find_circular_dependency.py
M utils/perl5lib/Build/Namelist.pm
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-9-2017
Tag: cime5.4.0-alpha.03
Answer Changes: None
Tests: scripts_regression_tests.pr
manual test of create_clone
Dependencies:
Brief Summary:
- Fix SE domain files.
- Use keyword-value pairs for create_clone call.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
55d2dbe Merge pull request #1957 from billsacks/create_clone_args
443312c Merge pull request #1951 from gold2718/seDomainFiles
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/create_clone
M src/drivers/mct/cime_config/config_component_cesm.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-6-2017
Tag: cime5.4.0-alpha.02
Answer Changes: None
Tests: scripts_regression_tests.py SMS_Ln9.f19_f19_mg17.F2000_DEV.yellowstone_intel.cam-cosp
IRT_Ld7.T31_g37.B1850C5L45BGCR.cheyenne_intel
hand testing tools/load_balancing_tool/test/test_load_balancing_tool.py
load_balancing_test.py
Dependencies:
Brief Summary:
- Fix cosp build instructions.
- Pio update branch.
- Refactor args to submit scripts.
- Archive pop tavg rpointer file.
- Add option to define test types in query_testlists.
- Fix tests for small systems.
- Only run driver build namelist after first day cycle.
- Load balancing tool mods.
- Use local baseline directory for testing.
- Add ability to cancel batch jobs to the system.
- A port to a generic Linux workstation.
- Fix pylint issue.
- Fix st_archive.
- Document uniqueness requirement for test-id.
- Add Argonne copyright statement.
- Rewrite of the load balancing tool.
- Imported mpi-serial changes from MCSclimate/mpi-serial.
User interface changes:
- New batch_env optional entry in config_batch.
- Add --baseline-root argument to case.cmpgen_baselines.
- new batch_cancel field in config_batch.
PR summary: git log --oneline --first-parent [previous_tag]..master
a2f0979 Merge pull request #1947 from jedwards4b/cosp_build_fix
1655800 Merge pull request #1948 from jedwards4b/pio_update_branch
d590c55 Merge pull request #1945 from ESMCI/jgfouca/refactor_args_to_submit_scripts
7f44f80 Merge pull request #1944 from jedwards4b/pop_tavg_archive
c7cf4eb Merge pull request #1930 from billsacks/query_testtypes
0742931 Merge pull request #1943 from jedwards4b/small_systems
34522a3 Merge pull request #1941 from jedwards4b/da_optimization
be3bf2e Merge pull request #1923 from jedwards4b/load-balancing-tool-mods
2d2ab96 Merge pull request #1939 from jedwards4b/srt_baselines
4e0e02e Merge pull request #1932 from ESMCI/jgfouca/add_job_cancel
d3a2da4 Merge pull request #1936 from jedwards4b/centos7_linux
bc35e32 fix pylint issue
874dc10 Merge pull request #1916 from ESMCI/kdraeder/fix_st_archive
7672387 Merge pull request #1934 from billsacks/document_testids
202e9a0 Merge pull request #1925 from ESMCI/rljacob/add-anl-copyright
b8b9f9e Merge pull request #1902 from ESMCI/sarich/tools/load-balancing-tool
4489a90 Merge pull request #1922 from gold2718/mpiserial_update
Modified files: git diff --name-status [previous_tag]
M LICENSE.TXT
M config/acme/machines/config_batch.xml
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
M config/cesm/config_archive.xml
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M doc/source/misc_tools/index.rst
A doc/source/misc_tools/load-balancing-tool.rst
M scripts/Tools/case.cmpgen_namelists
M scripts/create_test
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
M scripts/query_testlists
M scripts/tests/scripts_regression_tests.py
M src/externals/mct/mpi-serial/Makefile
M src/externals/mct/mpi-serial/mpi.c
M src/externals/mct/mpi-serial/mpif.h
M src/externals/mct/mpi-serial/tests/ftest.F90
M src/externals/mct/mpi-serial/tests/ftest_old.F90
M src/externals/mct/mpi-serial/type.c
M src/externals/pio1/pio/CMakeLists.txt
M src/externals/pio1/pio/pionfput_mod.F90.in
M src/externals/pio1/tests/testpio/perl5lib/ChangeLog
M src/externals/pio1/tests/testpio/perl5lib/XML/Changes
M src/externals/pio1/tests/testpio/perl5lib/XML/Lite.pm
M src/externals/pio1/tests/testpio/perl5lib/XML/Lite/Element.pm
M src/externals/pio1/tests/testpio/perl5lib/XML/README
D src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML::Lite.3
D src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML::Lite::Element.3
A src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML_Lite.3
A src/externals/pio1/tests/testpio/perl5lib/XML/man3/XML_Lite_Element.3
M src/externals/pio1/timing/COPYING
M src/externals/pio2/.gitignore
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/CTestScript.cmake
A src/externals/pio2/Makefile.am
A src/externals/pio2/cmake_config.h.in
A src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestEnvironment-cgd.cmake
M src/externals/pio2/ctest/runcdash-cgd-gnu-openmpi.sh
M src/externals/pio2/doc/source/Decomp.txt
M src/externals/pio2/doc/source/base.txt
M src/externals/pio2/doc/source/contributing_code.txt
M src/externals/pio2/doc/source/mach_walkthrough.txt
D src/externals/pio2/examples/basic/perl5lib/XML/man3/XML::Lite.3
D src/externals/pio2/examples/basic/perl5lib/XML/man3/XML::Lite::Element.3
A src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite.3
A src/externals/pio2/examples/basic/perl5lib/XML/man3/XML_Lite_Element.3
M src/externals/pio2/examples/c/CMakeLists.txt
M src/externals/pio2/scripts/prune_decomps.pl
A src/externals/pio2/src/Makefile.am
M src/externals/pio2/src/clib/CMakeLists.txt
A src/externals/pio2/src/clib/Makefile.am
D src/externals/pio2/src/clib/config.h.in
D src/externals/pio2/src/clib/dtypes.h
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pio_varm.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/gptl/COPYING
A src/externals/pio2/tests/Makefile.am
M src/externals/pio2/tests/cunit/CMakeLists.txt
A src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/pio_tests.h
A src/externals/pio2/tests/cunit/run_tests.sh
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
A src/externals/pio2/tests/cunit/test_async_manyproc.c
A src/externals/pio2/tests/cunit/test_async_mpi.c
A src/externals/pio2/tests/cunit/test_async_multi2.c
A src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_common.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_darray_1d.c
A src/externals/pio2/tests/cunit/test_darray_2sync.c
M src/externals/pio2/tests/cunit/test_darray_3d.c
A src/externals/pio2/tests/cunit/test_darray_async.c
A src/externals/pio2/tests/cunit/test_darray_async_many.c
A src/externals/pio2/tests/cunit/test_darray_async_simple.c
A src/externals/pio2/tests/cunit/test_darray_frame.c
M src/externals/pio2/tests/cunit/test_darray_multi.c
M src/externals/pio2/tests/cunit/test_darray_multivar.c
M src/externals/pio2/tests/cunit/test_darray_multivar2.c
A src/externals/pio2/tests/cunit/test_darray_multivar3.c
M src/externals/pio2/tests/cunit/test_decomp_uneven.c
M src/externals/pio2/tests/cunit/test_decomps.c
M src/externals/pio2/tests/cunit/test_intercomm2.c
M src/externals/pio2/tests/cunit/test_iosystem2.c
M src/externals/pio2/tests/cunit/test_iosystem2_simple.c
M src/externals/pio2/tests/cunit/test_iosystem2_simple2.c
M src/externals/pio2/tests/cunit/test_iosystem3.c
M src/externals/pio2/tests/cunit/test_iosystem3_simple.c
M src/externals/pio2/tests/cunit/test_iosystem3_simple2.c
M src/externals/pio2/tests/cunit/test_pioc.c
M src/externals/pio2/tests/cunit/test_pioc_fill.c
M src/externals/pio2/tests/cunit/test_pioc_putget.c
M src/externals/pio2/tests/cunit/test_pioc_unlim.c
M src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/cunit/test_shared.c
M src/externals/pio2/tests/cunit/test_spmd.c
M src/externals/pio2/tests/general/CMakeLists.txt
M src/externals/pio2/tests/general/ncdf_simple_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_fillval.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/util/pio_tutil.F90
M tools/load_balancing_tool/README
D tools/load_balancing_tool/code/cesm_scaling.gplot
D tools/load_balancing_tool/code/create_dataFile.pl
D tools/load_balancing_tool/code/f02_peList.txt
D tools/load_balancing_tool/code/f05_peList.txt
D tools/load_balancing_tool/code/f09_peList.txt
D tools/load_balancing_tool/code/f19_peList.txt
D tools/load_balancing_tool/code/fv_model.mod
D tools/load_balancing_tool/code/fv_model.run
D tools/load_balancing_tool/code/fv_second_pass.pl
D tools/load_balancing_tool/code/get_cesm_times.pl
D tools/load_balancing_tool/code/load_balance.pl
D tools/load_balancing_tool/code/merge.py
D tools/load_balancing_tool/code/model.data
D tools/load_balancing_tool/code/model.mod
D tools/load_balancing_tool/code/model.run
D tools/load_balancing_tool/code/neos.py
D tools/load_balancing_tool/global_variables.csh
A tools/load_balancing_tool/layouts.py
A tools/load_balancing_tool/load_balancing_solve.py
A tools/load_balancing_tool/load_balancing_submit.py
A tools/load_balancing_tool/optimize_model.py
D tools/load_balancing_tool/run_first.csh
D tools/load_balancing_tool/run_second.csh
A tools/load_balancing_tool/tests/__init__.py
A tools/load_balancing_tool/tests/atm_lnd.py
A tools/load_balancing_tool/tests/example.json
A tools/load_balancing_tool/tests/load_balancing_test.py
A tools/load_balancing_tool/tests/test.xml
A tools/load_balancing_tool/tests/timing/timing_1
A tools/load_balancing_tool/tests/timing/timing_2
A tools/load_balancing_tool/tests/timing/timing_3
======================================================================
Originator: Chris Fischer
Date: 9-25-2017
Tag: cime5.4.0-alpha.01
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Update version to cime5.3.0-alpha.01
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
Modified files: git diff --name-status [previous_tag]
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-25-2017
Tag: cime5.3.0-alpha.36
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Big refactor to queue selection.
- Shorter paths for case2 using system_tests_compare_two.
- Update atm coupling frequency for high-resolution grids.
- Add '-framework Accelerate' to LDFLAGS on a mac.
- Fix E3SM idmap check.
- Fix pylint issues.
- ERR test rework.
- New error trap if invalid "idmap" file is present in seq_maps.rc.
- Yellowstone tasps per node correction.
- Added new CAM-SE FVM grids and removed incorrect aliases.
- Fix generate and compare baseline functions.
- Add a derived variable NTASKS_PER_INST_COMP where COMP is the component
name (ATM, LND, etc)
- Don't check_if_comp_var to return a new vid if it's not a comp var.
User interface changes:
- jobmin and jobmax gone from config_batch.xml
- All CAM-SE grid aliases for data ocean models require a mask.
PR summary: git log --oneline --first-parent [previous_tag]..master
6049c79 Merge pull request #1918 from ESMCI/jgfouca/queue_selection_refactor_2
56d71c5 Merge pull request #1919 from billsacks/compare_two_shorter_path
e1b549d Merge pull request #1921 from gold2718/atm_ncpl_mods
f5ac341 Merge pull request #1906 from billsacks/mac_lapack
c15c0ad Merge pull request #1917 from ESMCI/mvertens/fix_acme_idmapcheck
f722595 fix pylint issues
19922e1 Merge pull request #1912 from jedwards4b/err_test_rework
b1d1b9b Merge pull request #1893 from ESMCI/mvertens/trip_invalid_idmap
c330b46 Merge pull request #1911 from jedwards4b/yellowstone_tpn_correction
0136051 Merge pull request #1896 from gold2718/fix_camse_grids
e036093 Merge pull request #1904 from jedwards4b/fix_gen_and_comp
f0522a6 Merge pull request #1900 from jedwards4b/NTASKS_PER_INST_XXX
f5aafff Merge pull request #1901 from ESMCI/jgfouca/xmlquery_minor_fix
2daf8aa Minor pylint fix, make get_queue_specs public
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_batch.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_headers.xml
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/env_batch.xsd
M scripts/create_test
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_clone.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-19-2017
Tag: cime5.3.0-alpha.35
Answer Changes: None
Tests: scripts_regression_tests.py, PEM_Ln9.f19_g16_rx1.A.yellowstone_intel
Dependencies:
Brief Summary:
- Test fixes.
- Can test single-submit on chama in addition to skybridge.
- Fix single submit option to create_test.
- Rename PES_PER_NODE to MAX_MPITASKS_PER_NODE.
- New git pelayout doc.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
e1e5e79 Merge pull request #1895 from jedwards4b/test_fixes
a3349ed Merge pull request #1899 from ESMCI/jgfouca/fix_single_submit
40e4b7b Merge pull request #1898 from ESMCI/jgfouca/fix_single_submit
5ba192b Merge pull request #1891 from jedwards4b/rename_pes_per_node
eb59169 Merge pull request #1888 from ESMCI/mvertens/new_pelayout_doc
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_pesall.xml
M config/acme/machines/config_batch.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
M config/acme/machines/userdefined_laptop_template/config_machines.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/cesm/machines/userdefined_laptop_template/config_machines.xml
M config/config_headers.xml
M config/config_tests.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
M config/xml_schemas/config_pes.xsd
M doc/source/users_guide/customizing-a-case.rst
M doc/source/users_guide/porting-cime.rst
M scripts/create_test
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/test_scheduler.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/docn/docn_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/main/cime_comp_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-13-2017
Tag: cime5.3.0-alpha.34
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix T31_g37 grid match in config_grids.
- Add a timeout option to wait_for_tests.
- Minor update to sphinx documentation.
- Allow queue selection by node count instead of task count.
- Get chama working (able to run scripts_regression_tests).
- Case clone move fix.
- Move case clone to its own file.
- Error check compset name.
- Improve error check for non-python sub processes.
- Add new user-mods option to create_clone.
- Fix 2-to-3 conversion errors in cime_bisect.
- Implementation of multiple drivers.
- Make sure file exists.
- Get log file from logdir instead of rundir.
- Add more unit tests of system_tests_compare_two, fix multisubmit bug.
- Merge new erp test into new restart_tests abstract class.
User interface changes:
- New --timeout flag for wait_for_tests
- New ways to select queue in config_batch.xml
- New argument to create_clone.
PR summary: git log --oneline --first-parent [previous_tag]..master
7efc1f5 Merge pull request #1886 from ESMCI/fischer/T41_g37_fix
6a6b5e8 Merge pull request #1884 from ESMCI/jgfouca/add_timeout_for_wait_for_tests
c848b17 Merge pull request #1883 from bertinia/master
766899e Merge pull request #1878 from ESMCI/jgfouca/queue_selection_based_on_nodes
d89064b Merge pull request #1881 from ESMCI/jgfouca/get_chama_working
b1ce54a Merge pull request #1880 from jedwards4b/case_clone
947e533 Merge pull request #1879 from jedwards4b/case_clone
2b1e151 Merge pull request #1873 from jedwards4b/error_check_compset_name
a72e5a0 Merge pull request #1875 from jedwards4b/improve_nonpy_subproc_handling
0b3dfca Merge pull request #1866 from ESMCI/mvertens/clone_with_usermods
cbe26ae Merge pull request #1876 from ESMCI/jgfouca/fix_2_to_3_conversion_errors_in_cime_bisect
c7efee1 Implementation of multiple drivers
4d9a8d7 Merge pull request #1868 from jedwards4b/is_python_a_file
7f34aa0 Merge pull request #1863 from jedwards4b/log_file_generate
230f7dd Merge pull request #1858 from billsacks/comparetwo_multisubmit_fix
14d138d Merge pull request #1857 from jedwards4b/erp_to_restart_tests
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_batch.xml
M config/acme/machines/config_machines.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/env_batch.xsd
M doc/Makefile
D doc/source/glossary.rst
M doc/source/index.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/multi-instance.rst
M doc/source/xml_files/cesm.rst
D scripts/Tools/archive_metadata.sh
M scripts/Tools/check_case
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/wait_for_tests
M scripts/create_clone
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/erp.py
A scripts/lib/CIME/SystemTests/mcc.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case.py
A scripts/lib/CIME/case_clone.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
A scripts/tests/user_mods_test3/shell_commands
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/xcpl_comps/xshare/dead_mod.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/unit_test/utils/mct_wrapper_mod.F90
M src/externals/mct/mct/m_MCTWorld.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-01-2017
Tag: cime5.3.0-alpha.33
Answer Changes: None
Tests: scripts_regression_tests.py N_TestUnitTest
cime_developer using pio1 and latest pio2 develop code
Dependencies:
Brief Summary:
- Rewrite ERP with SystemTestsCompareTwo.
- Convert the ERR and ERRI test to the compare2 framework.
- Get PFUnit working on melvin.
- Do not print message about leaving case directory if the directory was
never created.
- Allow user to adjust ulimits.
- Fix runtime issues with latest pio2 development.
- Preserve test order in test_scheduler.
- Update README
- Documentation tool updates and st_archive fix.
- Make the unsupported warning from create_newcase more prominent in the
output.
- Add irt test.
- Move inputdata location on pleiades.
- Fix issue with clone to new user.
- Fix for cime_output_root doesnt exist.
- Compare two test case names match.
- Fix Cmake path in fortran unit tests.
- Fix typo in config_machines.xml.
- Fix race condition for updated test_schedule use_existing test.
- Homebrew generic mac port.
- Add valid_lists for some of the *_OPTION entries that lacked them.
- Move from cime/src/externals/CMake to cime/src/CMake.
- Add message at end of successful build.
- Upgrade build system.
- Fix issue with update and alternate compiler.
- Fix use-existing feature for create_test.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c3459de Merge pull request #1855 from billsacks/erp2systemcomparetwo_refactor
a3bcaa0 Merge pull request #1852 from jedwards4b/err_2_compare_two
751fd7a Merge pull request #1844 from ESMCI/jgfouca/get_pfunit_working_on_melvin
0b8afd9 Merge pull request #1850 from jedwards4b/fix_error_message
dd04e87 Merge pull request #1847 from jedwards4b/user_resource_setting
65ac258 Merge pull request #1842 from jedwards4b/pio2_fix
33113cb Merge pull request #1843 from ESMCI/jgfouca/create_test_preserve_test_order
591c51b Update README
8b2c8a1 Merge pull request #1838 from bertinia/master
fef051e Merge pull request #1840 from jedwards4b/enhance_warning
fab7ccd Merge pull request #1837 from jedwards4b/add_irt_test
994d884 Merge pull request #1836 from fvitt/pleiades_inputdata
8545d9c Merge pull request #1835 from jedwards4b/clone_new_user_fix
3523743 fix for cime_output_root doesnt exist
00ac08a Merge pull request #1832 from jedwards4b/match_names_in_cases
7be7fb3 fix Cmake path in fortran unit tests
3dcdcb2 fix typo in config_machines.xml
730ed8b Merge pull request #1829 from ESMCI/jgfouca/fixes_for_test_scheduler_tests
9ec6020 Merge pull request #1820 from jedwards4b/homebrew_port
c4efac7 Merge pull request #1831 from ESMCI/jgfouca/add_valid_lists_for_options
33b8378 Merge pull request #1828 from ESMCI/jgfouca/move_cmake_stuff
02a9486 Merge pull request #1826 from billsacks/successful_build
2f9eacb Merge pull request #1823 from ESMCI/jgfouca/build_system_upgrades
8db85c7 fix issue with update and alternate compiler
356501d Merge pull request #1822 from ESMCI/jgfouca/fix_use_existing
Modified files: git diff --name-status [previous_tag]
M config/acme/config_archive.xml
M config/acme/machines/Makefile
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/machines/Makefile
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
M config/xml_schemas/env_mach_specific.xsd
M doc/README
A doc/source/glossary.rst
M doc/source/index.rst
M doc/source/users_guide/index.rst
M doc/source/what_cime/index.rst
M scripts/Tools/case.build
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/erri.py
A scripts/lib/CIME/SystemTests/irt.py
A scripts/lib/CIME/SystemTests/restart_tests.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/utils.py
M scripts/lib/update_acme_tests.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
A src/CMake/.gitignore
A src/CMake/CESM_utils.cmake
A src/CMake/CIME_initial_setup.cmake
A src/CMake/CIME_utils.cmake
A src/CMake/ChangeLog
A src/CMake/Compilers.cmake
A src/CMake/FindpFUnit.cmake
A src/CMake/LICENSE
A src/CMake/README.md
A src/CMake/Sourcelist_utils.cmake
A src/CMake/TryCSizeOf.f90
A src/CMake/TryMPIIO.f90
A src/CMake/TryMPIMod.f90
A src/CMake/TryMPISERIAL.f90
A src/CMake/TryPnetcdf_inc.f90
A src/CMake/TryPnetcdf_mod.f90
A src/CMake/genf90_utils.cmake
A src/CMake/mpiexec.cmake
A src/CMake/pFUnit_utils.cmake
M src/components/data_comps/datm/cime_config/config_archive.xml
M src/components/data_comps/desp/esp_utils.F90
M src/components/data_comps/dice/cime_config/config_archive.xml
M src/components/data_comps/dlnd/cime_config/config_archive.xml
M src/components/data_comps/docn/cime_config/config_archive.xml
M src/components/data_comps/drof/cime_config/config_archive.xml
M src/components/data_comps/dwav/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_archive.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
D src/drivers/mct/doc/bookinfo.xml
D src/drivers/mct/doc/chap1.xml
D src/drivers/mct/doc/chap2.xml
D src/drivers/mct/doc/figx1.jpg
D src/drivers/mct/doc/namelist.xml
D src/drivers/mct/doc/rundocbook.csh
D src/drivers/mct/doc/stylesheet.dsl
D src/drivers/mct/doc/ug.xml
D src/externals/CMake/.gitignore
D src/externals/CMake/CESM_utils.cmake
D src/externals/CMake/CIME_initial_setup.cmake
D src/externals/CMake/CIME_utils.cmake
D src/externals/CMake/ChangeLog
D src/externals/CMake/Compilers.cmake
D src/externals/CMake/FindpFUnit.cmake
D src/externals/CMake/LICENSE
D src/externals/CMake/README.md
D src/externals/CMake/Sourcelist_utils.cmake
D src/externals/CMake/TryCSizeOf.f90
D src/externals/CMake/TryMPIIO.f90
D src/externals/CMake/TryMPIMod.f90
D src/externals/CMake/TryMPISERIAL.f90
D src/externals/CMake/TryPnetcdf_inc.f90
D src/externals/CMake/TryPnetcdf_mod.f90
D src/externals/CMake/genf90_utils.cmake
D src/externals/CMake/mpiexec.cmake
D src/externals/CMake/pFUnit_utils.cmake
M src/share/util/shr_pcdf_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-16-2017
Tag: cime5.3.0-alpha.32
Answer Changes: None
Tests: scripts_regression_tests.py, f19_f19 and f09_f09 ADESP tests on hobart
cesm2 prealpha tests on cheyenne
scripts_regression_tests.py --compiler gnu --mpilib openmpi on cheyenne
Dependencies:
Brief Summary:
- Remove untested/unused scripts in Tools directory.
- Remove mask specification for test using DOCN%SOMAQP.
- Improve error messages from xmlchange.
- seq_comm_mct code cleanup.
- Refactor how spare nodes get computed.
- Fix SEQ test on skybridge.
- Get melvin scripts_regression_tests working again.
- Merge configuration changes from ACME to CIME.
- Allow running infnan unit tests even in DEBUG mode.
- Add -Og -fbacktrace to gnu debug flags.
- Allow --compiler and --mpilib
- Add a --compiler and --mpilib options to scripts_regression_tests.py.
User interface changes:
- Yes, new case variables controlling spare nodes
- Yes scripts_regression_tests.py now has --compiler and --mpilibs option.
PR summary: git log --oneline --first-parent [previous_tag]..master
1be3c17 Merge pull request #1751 from jedwards4b/tools_cleanup
30a17eb Merge pull request #1819 from ESMCI/fischer/ADESP_test_fix
37909bd Merge pull request #1818 from ESMCI/jgfouca/xmlchange_improve_error
8e9a554 Merge pull request #1805 from jedwards4b/seq_comm_mct_refactor
aa917ee Merge pull request #1816 from ESMCI/jgfouca/refactor_spare_nodes
b5ba1e8 Merge pull request #1817 from ESMCI/jgfouca/fix_seq_on_skybridge
bc0e1f1 Merge pull request #1815 from ESMCI/jgfouca/get_melvin_working_again
8032624 Merge pull request #1812 from ESMCI/mfdeakin-sandia/configuration_changes
f814ef3 Merge pull request #1810 from billsacks/infnan_unit_test
d3bcd58 Merge pull request #1808 from billsacks/gnu_debug_flags
7f91804 Merge pull request #1804 from jedwards4b/allow_new_opts_ctest
ab8f58b Merge pull request #1789 from jedwards4b/srt_compiler_option
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_machines.xml
M config/cesm/machines/config_compilers.xml
M config/config_tests.xml
M config/xml_schemas/config_machines_template.xml
M config/xml_schemas/env_mach_pes.xsd
M config/xml_schemas/env_mach_specific.xsd
D scripts/Tools/check_exactrestart.pl
D scripts/Tools/create_train
D scripts/Tools/load.awk
D scripts/Tools/mdiag_reduce.csh
D scripts/Tools/mdiag_reduce.pl
M scripts/Tools/xmlchange
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/case_setup.py
M scripts/tests/CMakeLists.txt
M scripts/tests/CTestConfig.cmake
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/share/test/unit/shr_infnan_test/CMakeLists.txt
M src/share/test/unit/shr_infnan_test/test_infnan.F90
======================================================================
Originator: Chris Fischer
Date: 8-08-2017
Tag: cime5.3.0-alpha.31
Answer Changes: [None, Round Off, Climate Changing]
Tests: spcam test, scripts_regression_tests.py
ERP.f09_f09_mg17.F2000_DEV
Dependencies:
Brief Summary:
- Updates for cheyenne.
- Broadcast comp_layout value from master after namelist read.
- Update CONTINUE_RUN before case.setup is run in erp test.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
c9c1fb9 Merge pull request #1800 from jedwards4b/cheyenne_updates
dce137b Merge pull request #1799 from jedwards4b/broadcast_layout
7b845d2 Merge pull request #1797 from jedwards4b/hybrid_erp_test_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/check_input_data.py
M src/drivers/mct/shr/seq_comm_mct.F90
======================================================================
Originator: Chris Fischer
Date: 8-07-2017
Tag: cime5.3.0-alpha.30
Answer Changes: None
Tests: scripts_regression_tests.pr
SMS_D_Ln9.f19_g16_rx1.A.hobart_intel
PFS.f19_g17.B1850.cheyenne_intel
I compset
PET_Ln9.f09_f09_mg17.F2000_DEV.cheyenne_intel.cam-outfrq9s
ERS.f09_g17.AIAF.cheyenne_intel
ERS.f09_g17.B1850Ws.cheyenne_intel.allactive-defaultio
ERS_D.T62_t12.DTEST.cheyenne_intel.cice-default
WACCMX smoke tests on pleiades
Dependencies:
Brief Summary:
- Stage the refcase before calling buildnml.
- Add more default logging to desp.
- Revert to netcdf 4.3.3.1 on yellowstone.
- Fix to get PRE test working on ADESP_TEST on Cheyenne.
- Update cori-knl batch and fix xsd error.
- Updates for NAS pleiades systems.
- Fix long line.
- Refactored datamodels.
- Documentation updates.
- Update IO_format for data models.
- Don't use Machines object to get DIN_LOC_ROOT.
- Fix uninitialized variable.
- Replace cdf64 logical with PIO_NETCDF_FORMAT character variable.
- Fix documentation error.
- Machine and grid updates.
- Check flds for nan.
- Facilitate expected error unit tests.
- Revert the netcdf update on yellowstone for gnu and pgi compilers.
- Remove misleading text from the dependency string in config_batch.xml.
- Add new case.qstatus script.
- Removing extraneous whitespace from the mct driver code.
- Fix issues with ensemble.sh.
- Yellowstone update netcdf module for compatibility with cdf5
- Fix print statement in find_circular_dependecy.py.
- Documentation updates.
- More documentation updates.
- Implement NCR with SystemTestsCompareTwo.
- Fix pylint issue
- Clean up caseroot directory upon failed creation.
- Make xmlquery, xmlchange work with entry_id variables in the
env_mach_specific.xml file.
- Need to add description fields for new datasets.
- get_tasks_per_node should never return 0.
- Start a section on adding new components to cime.
- Cleanup botched rebase for config_batch.xml.
- Couple trivial changes to satisfy pylint.
- Add Support for Email Options.
- System tests compare two stage two.
- Add --pesfile option to create_test.
- Fix melvin.
- Update netcdf version for ACME.
- fix of test IME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo
- Change SIAF compset name in dice to IAF to be consistent with other components.
- Fix PRE test with the ADESP and ADESP_TEST compsets
- datm updates for clm.
- Build scripts in source mods.
- Update for hobart out-of-the-box support
- Eleminate --user-compset, allow longname in tests.
- Fix error in path to env_mach_specific.xml file.
- Apply OCN_NCPL setting to any version of CLM.
- Fix of PRE test failing in cdash.
- Avoids an error if the forcing description is missing from
config_compsets_cesm.xml.
- lcdf4 flag does apply to pnetcdf.
- Fix an issue with pio_numtasks setting and make sure that external
scripts are syncd with case.
- Remove cesm refs from cime driver.
- Description field error check of user compsets.
- Introduce version 3.0 schema for entry_id files
- Fix bug in case.run where arg skip-preview-namelist is out of sequence.
User interface changes:
- New case.qstatus tool.
- Autodeletion of broken case dirs.
- Add --mail-user and --mail-type to case.submit.
- Add --pesfile option to create_test.
- Remove --user-compset from create_newcase, allow compset longname in
testname argument to create_test.
PR summary: git log --oneline --first-parent [previous_tag]..master
6db1569 Merge pull request #1795 from jedwards4b/stage_refcase
2815ea6 Merge pull request #1790 from gold2718/PreFix
c465923 Merge pull request #1791 from jedwards4b/yellowstone_netcdf_revert
c4d50cc Merge pull request #1787 from gold2718/PreFix
b65bfd6 Merge pull request #1784 from jedwards4b/misc_fixes
05e576d Merge pull request #1783 from fvitt/pleiades_cime5.3.0-alpha.29
397a62e Merge pull request #1786 from jedwards4b/fix_long_line
38a88f1 Merge pull request #1767 from ESMCI/mvertens/refactored_datamodels
b4c5cf7 Merge pull request #1782 from ESMCI/bertinia/doc
a650e47 Merge pull request #1778 from jedwards4b/update_dmodel_ioformat
999abc1 Merge pull request #1776 from jedwards4b/no_machines_in_check_input_data
d5f0db6 Merge pull request #1780 from jedwards4b/fix_uninitialized_var
919aee3 Merge pull request #1777 from jedwards4b/pio_netcdf_format
2f9fa03 Fix documentation error
32f9801 Merge pull request #1775 from ESMCI/fischer/machine_grid_updates
9217c9b Merge pull request #1765 from jedwards4b/check_flds_for_nan
8c61ea2 Merge pull request #1771 from billsacks/unittest_throw_exception
25d82e6 Merge pull request #1772 from jedwards4b/revert_netcdf_for_secondary_compilers_yellowstone
7a671be Merge pull request #1768 from ESMCI/mfdeakin-sandia/config_batch/remove_misleading_text
df44c12 Merge pull request #1758 from ESMCI/jgfouca/case_qstatus
bb1aec9 Merge pull request #1766 from jedwards4b/remove_whitespace_mct_driver
b4419ef Merge pull request #1761 from allibco/master
84aafd5 Merge pull request #1759 from jedwards4b/yellowstone_updates
bdad4d9 Fixed print statement in find_circular_dependecy.py
bb9c6f0 Merge pull request #1756 from ESMCI/bertinia/doc
2e46704 Merge pull request #1752 from ESMCI/bertinia/doc
e1db2f1 Merge pull request #1744 from ESMCI/mfdeakin-sandia/systemtestscomparetwo/ncr
89fbd14 fix pylint issue
154db7b Merge pull request #1750 from ESMCI/jgfouca/cleanup_caseroot_upon_failed_creation
ffd327a Merge pull request #1748 from jedwards4b/run_exe_xmlquery
37a6807 Merge pull request #1745 from jedwards4b/clm_datm_changesv3
8652190 Merge pull request #1746 from ESMCI/jgfouca/fix_small_machines
808774d Merge pull request #1742 from jedwards4b/adding_components
1afee01 Cleanup botched rebase for config_batch.xml
550ccc9 Couple trivial changes to satisfy pylint
7a2739f Merge pull request #1719 from ESMCI/erichlf/batch/email
16070a4 Merge pull request #1738 from jedwards4b/system_tests_compare_two_stage_two
469156f Merge pull request #1735 from jedwards4b/add_pesfile_to_create_test
eceeaeb Merge pull request #1740 from ESMCI/jgfouca/update_netcdf_for_sandia_machines
8c4828b Merge pull request #1739 from ESMCI/jgfouca/update_netcdf_for_sandia_machines
d5a9d61 hot fix of test IME.tests.SystemTests.test_system_tests_compare_two.TestSystemTestsCompareTwo
d5b7c48 Merge pull request #1736 from jedwards4b/dice_compset_fix
fecd52e Merge pull request #1734 from gold2718/PreFix
1fd77e8 Merge pull request #1728 from ESMCI/sacks/updates_for_clm_v2
69f0128 Merge pull request #1730 from jedwards4b/build_scripts_in_SourceMods
29d87f0 Merge pull request #1729 from bertinia/master
095e84c Merge pull request #1721 from jedwards4b/remove_user_compset_arg
a26d8b1 Merge pull request #1725 from jedwards4b/env_mach_specific_path_correction
3d40552 Merge pull request #1688 from billsacks/ocn_ncpl_clm5
e9c2f45 hot fix of PRE test failing in cdash
a8d0993 Merge pull request #1716 from jedwards4b/missing_forcing_fix
a170957 Merge pull request #1705 from jedwards4b/cpl_hist_64bit_mode
2732eda Merge pull request #1712 from jedwards4b/pio_namelist_and_externals_fix
02608e4 Merge pull request #1708 from ESMCI/rljacob/drv/de-cesmify
fb3a6c5 Merge pull request #1697 from jedwards4b/description_field
4b116ba Merge pull request #1703 from ESMCI/sarich/scripts/fix-skip-preview-namelist-parsing-order
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M config/acme/config_files.xml
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_batch.xsd
M config/acme/machines/config_machines.xml
M config/acme/machines/template.case.run
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
D config/cesm/machines/Depends.goldbach
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/entry_id_base.xsd
A config/xml_schemas/entry_id_base_version3.xsd
A config/xml_schemas/entry_id_version3.xsd
M config/xml_schemas/env_mach_specific.xsd
A doc/.gitignore
M doc/Makefile
A doc/README
A doc/source/README
A doc/source/Tools_user/index.rst.template
A doc/source/build_cpl/adding-components.rst
M doc/source/build_cpl/index.rst
M doc/source/build_cpl/introduction.rst
M doc/source/conf.py
D doc/source/conf.py_old
M doc/source/driver_cpl/time-management.rst
A doc/source/glossary/index.rst
M doc/source/index.rst
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/what_cime/index.rst
A doc/source/xml_files/acme.rst
A doc/source/xml_files/atmosphere.rst
A doc/source/xml_files/cesm.rst
A doc/source/xml_files/common.rst
A doc/source/xml_files/components.rst
A doc/source/xml_files/drivers.rst
A doc/source/xml_files/esp.rst
A doc/source/xml_files/index.rst
A doc/source/xml_files/land.rst
A doc/source/xml_files/landice.rst
A doc/source/xml_files/ocean.rst
A doc/source/xml_files/river.rst
A doc/source/xml_files/seaice.rst
A doc/source/xml_files/wave.rst
A doc/tools_autodoc.cfg
A doc/tools_autodoc.py
M scripts/Tools/case.build
A scripts/Tools/case.qstatus
M scripts/Tools/case.submit
M scripts/Tools/check_input_data
M scripts/Tools/normalize_cases
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_run.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/case_fake.py
M scripts/lib/CIME/utils.py
M scripts/lib/update_acme_tests.py
M scripts/manage_pes
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
A src/build_scripts/buildlib.internal_components
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
D src/components/data_comps/datm/atm_comp_mct.F90
T src/components/data_comps/datm/cime_config/buildlib
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/datm/datm_shr_mod.F90
A src/components/data_comps/datm/mct/atm_comp_mct.F90
T src/components/data_comps/desp/cime_config/buildlib
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/desp/cime_config/config_component.xml
M src/components/data_comps/desp/cime_config/namelist_definition_desp.xml
M src/components/data_comps/desp/desp_comp_mod.F90
D src/components/data_comps/desp/esp_comp_mct.F90
M src/components/data_comps/desp/esp_utils.F90
A src/components/data_comps/desp/mct/esp_comp_mct.F90
T src/components/data_comps/dice/cime_config/buildlib
M src/components/data_comps/dice/cime_config/config_component.xml
M src/components/data_comps/dice/dice_comp_mod.F90
A src/components/data_comps/dice/dice_shr_mod.F90
D src/components/data_comps/dice/ice_comp_mct.F90
A src/components/data_comps/dice/mct/ice_comp_mct.F90
T src/components/data_comps/dlnd/cime_config/buildlib
M src/components/data_comps/dlnd/cime_config/config_component.xml
M src/components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps/dlnd/dlnd_comp_mod.F90
A src/components/data_comps/dlnd/dlnd_shr_mod.F90
D src/components/data_comps/dlnd/lnd_comp_mct.F90
A src/components/data_comps/dlnd/mct/lnd_comp_mct.F90
T src/components/data_comps/docn/cime_config/buildlib
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/docn_comp_mod.F90
A src/components/data_comps/docn/docn_shr_mod.F90
A src/components/data_comps/docn/mct/ocn_comp_mct.F90
D src/components/data_comps/docn/ocn_comp_mct.F90
T src/components/data_comps/drof/cime_config/buildlib
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/drof/drof_comp_mod.F90
A src/components/data_comps/drof/drof_shr_mod.F90
A src/components/data_comps/drof/mct/rof_comp_mct.F90
D src/components/data_comps/drof/rof_comp_mct.F90
A src/components/data_comps/dshare/shr_dmodel_mod.F90
A src/components/data_comps/dshare/shr_strdata_mod.F90
A src/components/data_comps/dshare/shr_stream_mod.F90
A src/components/data_comps/dshare/shr_tInterp_mod.F90
T src/components/data_comps/dwav/cime_config/buildlib
M src/components/data_comps/dwav/cime_config/config_component.xml
M src/components/data_comps/dwav/dwav_comp_mod.F90
A src/components/data_comps/dwav/dwav_shr_mod.F90
A src/components/data_comps/dwav/mct/wav_comp_mct.F90
D src/components/data_comps/dwav/wav_comp_mct.F90
T src/components/stub_comps/satm/cime_config/buildlib
M src/components/stub_comps/satm/cime_config/buildnml
M src/components/stub_comps/satm/cime_config/config_component.xml
T src/components/stub_comps/sesp/cime_config/buildlib
M src/components/stub_comps/sesp/cime_config/buildnml
M src/components/stub_comps/sesp/cime_config/config_component.xml
T src/components/stub_comps/sglc/cime_config/buildlib
M src/components/stub_comps/sglc/cime_config/buildnml
M src/components/stub_comps/sglc/cime_config/config_component.xml
T src/components/stub_comps/sice/cime_config/buildlib
M src/components/stub_comps/sice/cime_config/buildnml
M src/components/stub_comps/sice/cime_config/config_component.xml
T src/components/stub_comps/slnd/cime_config/buildlib
M src/components/stub_comps/slnd/cime_config/buildnml
M src/components/stub_comps/slnd/cime_config/config_component.xml
T src/components/stub_comps/socn/cime_config/buildlib
M src/components/stub_comps/socn/cime_config/buildnml
T src/components/stub_comps/srof/cime_config/buildlib
M src/components/stub_comps/srof/cime_config/buildnml
T src/components/stub_comps/swav/cime_config/buildlib
M src/components/stub_comps/swav/cime_config/buildnml
M src/components/stub_comps/swav/cime_config/config_component.xml
T src/components/xcpl_comps/xatm/cime_config/buildlib
M src/components/xcpl_comps/xatm/cime_config/config_component.xml
T src/components/xcpl_comps/xglc/cime_config/buildlib
M src/components/xcpl_comps/xglc/cime_config/config_component.xml
T src/components/xcpl_comps/xice/cime_config/buildlib
M src/components/xcpl_comps/xice/cime_config/config_component.xml
T src/components/xcpl_comps/xlnd/cime_config/buildlib
M src/components/xcpl_comps/xlnd/cime_config/config_component.xml
T src/components/xcpl_comps/xocn/cime_config/buildlib
M src/components/xcpl_comps/xocn/cime_config/config_component.xml
T src/components/xcpl_comps/xrof/cime_config/buildlib
M src/components/xcpl_comps/xrof/cime_config/config_component.xml
T src/components/xcpl_comps/xwav/cime_config/buildlib
M src/components/xcpl_comps/xwav/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/namelist_definition_modelio.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
A src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/som/shell_commands
M src/drivers/mct/main/CMakeLists.txt
D src/drivers/mct/main/cesm_comp_mod.F90
D src/drivers/mct/main/cesm_driver.F90
A src/drivers/mct/main/cime_comp_mod.F90
A src/drivers/mct/main/cime_driver.F90
M src/drivers/mct/main/component_mod.F90
M src/drivers/mct/main/component_type_mod.F90
M src/drivers/mct/main/map_glc2lnd_mod.F90
M src/drivers/mct/main/map_lnd2glc_mod.F90
M src/drivers/mct/main/mrg_mod.F90
M src/drivers/mct/main/prep_aoflux_mod.F90
M src/drivers/mct/main/prep_atm_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/prep_ice_mod.F90
M src/drivers/mct/main/prep_ocn_mod.F90
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/main/seq_domain_mct.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/main/seq_hist_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/CMakeLists.txt
M src/drivers/mct/shr/glc_elevclass_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/drivers/mct/shr/shr_ndep_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
A src/drivers/mct/unit_test/check_fields_test/CMakeLists.txt
A src/drivers/mct/unit_test/check_fields_test/test_check_fields.pf
M src/drivers/mct/unit_test/utils/create_mapper_mod.F90
M src/externals/CMake/CIME_utils.cmake
M src/share/test/unit/CMakeLists.txt
A src/share/test/unit/mock/README
M src/share/test/unit/mock/shr_sys_mod.nompi_abortthrows.F90
A src/share/test/unit/shr_abort_test/CMakeLists.txt
A src/share/test/unit/shr_abort_test/README
A src/share/test/unit/shr_abort_test/test_shr_abort.pf
M src/share/test/unit/shr_assert_test/CMakeLists.txt
M src/share/test/unit/shr_spfn_test/CMakeLists.txt
M src/share/test/unit/shr_string_test/CMakeLists.txt
M src/share/unit_test_stubs/README
A src/share/unit_test_stubs/util/CMakeLists.txt
A src/share/unit_test_stubs/util/README
A src/share/unit_test_stubs/util/shr_abort_mod.abortthrows.F90
M src/share/util/CMakeLists.txt
A src/share/util/shr_abort_mod.F90
D src/share/util/shr_dmodel_mod.F90
M src/share/util/shr_mct_mod.F90
M src/share/util/shr_pcdf_mod.F90
M src/share/util/shr_pio_mod.F90
D src/share/util/shr_strdata_mod.F90
D src/share/util/shr_stream_mod.F90
M src/share/util/shr_sys_mod.F90
D src/share/util/shr_tInterp_mod.F90
M tools/cprnc/README
M tools/statistical_ensemble_test/ensemble.sh
M tools/statistical_ensemble_test/single_run.sh
M tools/utils/find_circular_dependency.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-22-2017
Tag: cime5.3.0-alpha.29
Answer Changes: None
Tests: Hand tested AIAF creation for acme and cesm models
Dependencies:
Brief Summary:
- Back up datm tintalgo for AIAF to cesm default for just cesm.
- Update copyright, authors and section 6.4 content.
- Correct faq to point to use_cases.
- Merge doc branch from bjsmith
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
5921fff Merge pull request #1702 from ESMCI/mvertens/fix_datm_tintalgo
18faea2 Merge pull request #1700 from bertinia/master
d29cd98 Merge pull request #1698 from bertinia/master
00989ab Merge branch 'bjsmith2014-master'
Modified files: git diff --name-status [previous_tag]
M doc/source/conf.py
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/create-a-case.rst
D doc/source/users_guide/faq/basics-a-basic-example.rst
D doc/source/users_guide/faq/basics-mpi-example.rst
D doc/source/users_guide/faq/basics-setting-up-a-branch-or-hybrid-run.rst
D doc/source/users_guide/faq/faq.rst
M doc/source/users_guide/index.rst
M doc/source/users_guide/running-a-case.rst
A doc/source/users_guide/use_cases/basics-a-basic-example.rst
A doc/source/users_guide/use_cases/basics-mpi-example.rst
A doc/source/users_guide/use_cases/basics-setting-up-a-branch-or-hybrid-run.rst
A doc/source/users_guide/use_cases/use-cases.rst
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-15-2017
Tag: cime5.3.0-alpha.28
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Change typo PCLHIST to CPLHIST in datm.
- Remove empty proxy tag from anlworkstation.
- Create PULL_REQUEST_TEMPLATE.
- Updating CIME users guide.
- Adds support for data model to read multiple time slices at once.
- Fix xmlquery issues.
- Merge last 3 months of ACME work.
- Backward compatible change to allow more than one mach for each grid.
User interface changes:
- new xml variable, readmode
- xmlquery --group has been changed go xmlquery --get-group
PR summary: git log --oneline --first-parent [previous_tag]..master
f449794 Merge pull request #1696 from ESMCI/fischer/cplhist
547f68b Merge pull request #1689 from ESMCI/dqwu/anlworkstation-remove-proxy-tag
160a6e7 Create PULL_REQUEST_TEMPLATE
9b5ef51 Merge pull request #1686 from bjsmith2014/master 7efcbcf hot fix for pylint error
002df11 Merge pull request #1418 from bishtgautam/bishtgautam/data-model c7c79fe
813683d Merge pull request #1684 from ESMCI/mvertens/fixing_xmlquery
47a559a Merge pull request #1634 from ESMCI/jgfouca/acme_merge_06_01_2017
b795c3e Merge pull request #1680 from jedwards4b/config_pes_xsd_correction
Modified files: git diff --name-status [previous_tag]
M .github/PULL_REQUEST_TEMPLATE
M config/acme/allactive/config_compsets.xml
D config/acme/allactive/config_compsets.xml.cime2
D config/acme/allactive/config_pes.xml
D config/acme/allactive/config_pes.xml.cime2
M config/acme/allactive/config_pesall.xml
D config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
M config/acme/config_archive.xml
M config/acme/config_grids.xml
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
M config/acme/machines/syslog.anvil
M config/acme/machines/syslog.cetus
M config/acme/machines/syslog.cori-haswell
M config/acme/machines/syslog.cori-knl
M config/acme/machines/syslog.edison
M config/acme/machines/syslog.mira
M config/acme/machines/syslog.titan
M config/acme/machines/template.case.run
M config/acme/machines/template.st_archive
A config/acme/testmods_dirs/allactive/cam/cosplite/user_nl_cam
A config/acme/testmods_dirs/allactive/cam/cosplite/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/user_nl_cam
A config/acme/testmods_dirs/allactive/cam/cosplite_nhtfrq5/xmlchange_cmnds
M config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/cam/rtm_null/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/clm/betr/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/clm/eca/user_nl_clm
A config/acme/testmods_dirs/allactive/clm/fates/user_nl_clm
M config/cesm/machines/template.st_archive
M config/config_tests.xml
M config/xml_schemas/config_pes.xsd
M doc/source/users_guide/adding-cases.rst
M doc/source/users_guide/multi-instance.rst
M doc/source/users_guide/unit_testing.rst
D scripts/Tools/cron_script
M scripts/Tools/jenkins_generic_job
M scripts/Tools/jenkins_script
M scripts/Tools/xmlquery
A scripts/lib/CIME/SystemTests/erri.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_cmpgen_namelists.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_status.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/dice/cime_config/namelist_definition_dice.xml
M src/components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_pes.xml
M src/externals/mct/mct/Makefile
M src/externals/mct/mct/m_AttrVect.F90
M src/externals/mct/mct/m_GlobalSegMap.F90
M src/externals/mct/mct/m_MatAttrVectMul.F90
M src/externals/mct/mct/m_Rearranger.F90
M src/externals/mct/mct/m_Router.F90
A src/externals/mct/mct/m_SPMDutils.F90
M src/externals/mct/mpeu/m_FcComms.F90
D src/externals/mct/mpi-serial/NOTES
M src/externals/mct/testsystem/testall/ReadSparseMatrixAsc.F90
M src/externals/mct/testsystem/testall/cpl.F90
M src/externals/pio1/pio/pio_types.F90
M src/externals/pio1/pio/piolib_mod.F90
M src/externals/pio1/pio/pionfput_mod.F90.in
M src/share/util/shr_dmodel_mod.F90
M src/share/util/shr_strdata_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Bill Sacks
Date: 6-13-2017
Tag: cime5.3.0-alpha.27
Answer Changes: None
Tests: scripts_regression_tests on most PRs
Dependencies: CLM now needs to define its own LII and SSP tests
Brief Summary:
- Allow for distributed config_tests.xml file and move LII and SSP
tests out of cime. Also an unrelated minor bug fix in case.py
- Updates to CIME User Guide
- Fix XML schemas error for ALCF's Mira/Cetus
- Do not add empty user mods
- Clean up help text for query_testlists
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d8ae575 Merge pull request #1682 from jedwards4b/config_tests_distribution
08cfb55 Merge pull request #1681 from bjsmith2014/master
d0d6648 Merge pull request #1679 from ESMCI/dqwu/fix_xml_schemas_alcf
876b6fe Merge pull request #1675 from billsacks/do_not_add_empty_user_mods
fdcac68 Merge pull request #1669 from billsacks/query_testlists_help
15768a0 Merge pull request #1671 from bjsmith2014/master
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_machines.xml
M config/cesm/config_files.xml
M config/config_tests.xml
M doc/source/users_guide/multi-instance.rst
M doc/source/users_guide/unit_testing.rst
D scripts/lib/CIME/SystemTests/lii.py
D scripts/lib/CIME/SystemTests/ssp.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/utils.py
M scripts/query_testlists
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-10-2017
Tag: cime5.3.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests.py J_TestCreateNewcase
scripts_regression_tests
Dependencies:
Brief Summary:
- Provides better description of CCSM_BGC xml variable for both ACME and
CESM
- Add a test to scripts_regression_tests.py to assure that instantiating a
case does not invoke a flush command.
- User compset fixes.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
f8eb8b4 Merge pull request #1670 from ESMCI/mvertens/fix_ccsm_bgc_desc
8ea2801 Merge pull request #1666 from jedwards4b/case_instantiate_test
383c1f5 Merge pull request #1667 from billsacks/user_compset_fixes
Modified files: git diff --name-status [previous_tag]
M scripts/create_newcase
M scripts/lib/CIME/case.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-8-2017
Tag: cime5.3.0-alpha.25
Answer Changes: None
Tests: scripts_regression_tests.py, SMS_D.f19_f19.F1850.cori-knl_intel
create_test cime_developer
Dependencies:
Brief Summary:
- Remove COMP_INTERFACE references to esmf and downcase the value.
- Make Flgl_qice attname consistent with name.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
aadee35 Merge pull request #1663 from jedwards4b/comp_interface_fix
f8f6221 Merge pull request #1662 from billsacks/fix_flgl
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/Makefile
M config/cesm/machines/Makefile
M scripts/lib/CIME/build.py
M scripts/lib/CIME/test_scheduler.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-8-2017
Tag: cime5.3.0-alpha.24
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Convert user_mods_dir to abspath earlier.
- Update gnu modules on cheyenne to use openmpi.
- Fix failing builds on CIME master.
- Update cime users guide.
- Cleanup and fixes addressing running scripts_regression_tests.py on a mac.
- Update contents after create_case.
- Define out-of-the-box.
- Update case-basics
- Replace manage_case with query_case.
- Updates modules for cori-knl in cesm.
- Update cime users guide.
- Add a grid alias and new test to mct driver testlist.
- Merge of bjsmith changes to cime users guide.
- New match attribute that can be 'last' or 'first' for values match in
component.py
User interface changes:
- New match attribute elements that are children of <entry> nodes.
PR summary: git log --oneline --first-parent [previous_tag]..master
72198f2 Merge pull request #1657 from billsacks/usermods_relative_path
9ae4f31 Merge pull request #1661 from ESMCI/fischer/gnu_cheyenne
9a43e4b hot fix for issue 1656
75c1967 Merge pull request #1652 from bjsmith2014/master
86912da Merge pull request #1645 from jedwards4b/macport_issues
8517405 Update contents after create_case
435b426 Define out-of-the-box
cb41c58 Update case-basics
6e72a7b replace manage_case with query_case
19a4641 Merge pull request #1649 from jedwards4b/cori_update
543629e Merge pull request #1648 from bjsmith2014/master
0ab580e Merge pull request #1646 from ESMCI/fischer/TestGridUpdate
c26ec40 Merge pull request #1641 from bjsmith2014/master
0d1bbd8 Merge pull request #1636 from ESMCI/mvertens/new_component_matches
3b238a8 Merge pull request #1635 from bjsmith2014/master
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/Makefile
M config/cesm/config_grids.xml
M config/cesm/machines/Makefile
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_compsets.xsd
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/cime-internals.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/customizing-a-case.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/optimizing-processor-layout.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/troubleshooting.rst
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/machines.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/desp/cime_config/config_component.xml
M src/components/data_comps/dice/cime_config/config_component.xml
M src/components/data_comps/dlnd/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/dwav/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-4-2017
Tag: cime5.3.0-alpha.23
Answer Changes: None
Tests: scripts_regression_tests
pylint, unit-tests
Dependencies:
Brief Summary:
- Fixes a critical error for ERP tests.
- Change run_cmd_no_fail doctest to not match directory.
- Bring bless_test_results behavior into an exact match with create_test -g.
- Merge and update CIME users guide rst source.
- Fix a critical problem in code_checker that caused it to filter too many files.
- Copied doc dir into master in order to create a gh-pages orphan branch.
- Fix race condition with case XML files when using set_file and some other unrelated bugs.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
4525e19 Merge pull request #1639 from ESMCI/mvertens/python3string_fixes
4775d9a Change run_cmd_no_fail doctest to not match directory
4db9834 Merge pull request #1632 from ESMCI/jgfouca/generate_baseline_should_include_logs
4ba0b44 Merge pull request #1631 from bjsmith2014/master
37e4ed7 Merge pull request #1629 from ESMCI/jgfouca/pylint_fixes_and_more
6a7ffc2 Merge pull request #1623 from bertinia/master
65bd395 Merge pull request #1616 from ESMCI/jgfouca/fix_race
Modified files: git diff --name-status [previous_tag]
M .gitignore
A .nojekyll
M LICENSE.TXT
A doc/Makefile
A doc/source/_static
A doc/source/build_cpl/index.rst
A doc/source/build_cpl/introduction.rst
A doc/source/conf.py
A doc/source/conf.py_old
A doc/source/data_models/data-atm.rst
A doc/source/data_models/data-lnd.rst
A doc/source/data_models/data-model-science.rst
A doc/source/data_models/data-ocean.rst
A doc/source/data_models/data-river.rst
A doc/source/data_models/data-seaice.rst
A doc/source/data_models/data-wave.rst
A doc/source/data_models/design-details.rst
A doc/source/data_models/index.rst
A doc/source/data_models/input-streams.rst
A doc/source/data_models/introduction.rst
A doc/source/driver_cpl/bit-for-bit-flag.rst
A doc/source/driver_cpl/budgets.rst
A doc/source/driver_cpl/cplug-02.1-figx1.jpg
A doc/source/driver_cpl/design.rst
A doc/source/driver_cpl/driver_threading_control.rst
A doc/source/driver_cpl/grids.rst
A doc/source/driver_cpl/history-and-restarts.rst
A doc/source/driver_cpl/implementation.rst
A doc/source/driver_cpl/index.rst
A doc/source/driver_cpl/initialization-and-restart.rst
A doc/source/driver_cpl/introduction.rst
A doc/source/driver_cpl/multi-instance.rst
A doc/source/driver_cpl/namelist-overview.rst
A doc/source/driver_cpl/time-management.rst
A doc/source/index.rst
A doc/source/misc_tools/index.rst
A doc/source/users_guide/adding-cases.rst
A doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/case-basics.rst
A doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/cloning-a-case.rst
A doc/source/users_guide/create-a-case.rst
A doc/source/users_guide/customizing-a-case.rst
A doc/source/users_guide/faq/basics-a-basic-example.rst
A doc/source/users_guide/faq/basics-mpi-example.rst
A doc/source/users_guide/faq/basics-setting-up-a-branch-or-hybrid-run.rst
A doc/source/users_guide/faq/faq.rst
A doc/source/users_guide/index.rst
A doc/source/users_guide/introduction-and-overview.rst
A doc/source/users_guide/multi-instance.rst
A doc/source/users_guide/optimizing-processor-layout.rst
A doc/source/users_guide/porting-cime.rst
A doc/source/users_guide/running-a-case.rst
A doc/source/users_guide/setting-up-a-case.rst
A doc/source/users_guide/testing.rst
A doc/source/users_guide/troubleshooting.rst
A doc/source/users_guide/unit_testing.rst
A doc/source/what_cime/index.rst
A index.html
M scripts/Tools/normalize_cases
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-28-2017
Tag: cime5.3.0-alpha.22
Answer Changes: Climate Changing for active two-way coupled GLC
Tests: Ran gnu TG smoke tests
aux_clm45 yellowstone_gnu
create_test cime_developer --queue long
scripts_regression_tests.py --fast
code_checker and scripts_regressions_tests.pr
CECO.hobart_pgi build
Dependencies:
Brief Summary:
- Remove no-longer-needed CISM_GNU setting.
- Add more error-checking with gnu in debug mode.
- Map SMB from lnd to glc using bilinear mapping with a conservation
correction.
- Do not eval words - only strings with whitespace.
- Change all python2 style strings to python3 style strings.
- Update the user_defined template.
- Update testreporter and change hobart queue to medium.
- Improve handling of hist comparisons in TestStatus.log.
- Update PGI compiler to 17.04 on hobart.
- Downscale build parellism on small machines.
User interface changes:
- New drv_in namelist variable: 'glc_renormalize_smb'
- Contents of TestStatus.log.
- Automatic downscale of builds.
PR summary: git log --oneline --first-parent [previous_tag]..master
2f6e683 Merge pull request #1620 from billsacks/remove_cism_gnu
4f08bb0 Merge pull request #1618 from billsacks/gnu_debug_flags
7a5242d Merge pull request #1609 from billsacks/lnd2glc_bilinear
21f2a20 Merge pull request #1614 from jedwards4b/eval_fix
2890518 Merge pull request #1608 from ESMCI/erichlf/3strings
fb3f533 Merge pull request #1611 from jedwards4b/update_user_defined
162ba85 Merge pull request #1610 from ESMCI/fischer/testreporter_fix
a9cc09c Merge pull request #1606 from ESMCI/jgfouca/improve_logs_for_compares
2deb949 Merge pull request #1602 from mnlevy1981/machines/hobart_pgi_ver
0b55ea3 Merge pull request #1605 from ESMCI/jgfouca/downscale_builds_on_small_machs
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/template.st_archive
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/cesm/machines/userdefined_laptop_template/README.md
M config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M config/cesm/machines/userdefined_laptop_template/config_machines.xml
M scripts/Tools/acme_check_env
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/cs.status
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_acme_tests
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/pointclm/makepointdata.py
M scripts/Tools/pointclm/post_process.py
M scripts/Tools/pointclm/site_fullrun.py
M scripts/Tools/preview_run
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/testreporter.py
M scripts/Tools/update_acme_tests
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/create_newcase
M scripts/fortran_unit_testing/python/printer.py
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/ssp.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/XML/testspec.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_cmpgen_namelists.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
M scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
M scripts/tests/list_tests
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/CMakeLists.txt
M src/drivers/mct/main/map_lnd2glc_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/prep_lnd_mod.F90
D src/drivers/mct/main/vertical_gradient_calculator_2nd_order.F90
D src/drivers/mct/main/vertical_gradient_calculator_base.F90
D src/drivers/mct/main/vertical_gradient_calculator_factory.F90
M src/drivers/mct/shr/glc_elevclass_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
M src/drivers/mct/unit_test/glc_elevclass_test/test_glc_elevclass.pf
D src/drivers/mct/unit_test/map_lnd2glc_test/CMakeLists.txt
D src/drivers/mct/unit_test/map_lnd2glc_test/test_map_lnd2glc.pf
M src/drivers/mct/unit_test/stubs/CMakeLists.txt
D src/drivers/mct/unit_test/stubs/vertical_gradient_calculator_constant.F90
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/CMakeLists.txt
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/README
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/gradient_example.txt
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/plot_gradient
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_2nd_order.pf
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_factory.pf
M src/share/test/unit/shr_string_test/test_shr_string.pf
M src/share/util/shr_string_mod.F90
M tools/load_balancing_tool/code/merge.py
M tools/load_balancing_tool/code/neos.py
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
M tools/utils/find_circular_dependency.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.21
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Fixed issue with GET_REFCASE not being set correctly.
- Don't ignore attributes for Compilers.get_value.
- Add ability for create_test to infer non-default machine from tests.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
25a7f27 Merge pull request #1604 from jedwards4b/refcase_fix
56fd28c Merge pull request #1598 from ESMCI/jgfouca/compiler_use_attribute
7003fe2 Merge pull request #1597 from ESMCI/jgfouca/infer_machine_from_tests
Modified files: git diff --name-status [previous_tag]
M scripts/create_test
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/case.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.20
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Add the f19_g17 maps, as wall as the ww3 <-> tx1v1 maps.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
0e9a1e0 Merge pull request #1594 from mnlevy1981/maps/update_ocean_maps
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.19
Answer Changes: None
Tests: scripts_regression_tests --fast
Dependencies:
Brief Summary:
- Revert "Updated grid aliases in cesm/config_grids.xml"
- Build failures should not dump a full stacktracesince a code problem is
not the fault of CIME infrastructure.
Also, deprecate shell calls to date in favor of python interface to get
timestamp.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
0817502 Merge pull request #1596 from ESMCI/revert-1585-master
0ee6cb7 Merge pull request #1595 from ESMCI/jgfouca/improve_build_fail_msg
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/build.py
M src/drivers/mct/cime_config/buildnml
======================================================================
Originator: Chris Fischer
Date: 5-23-2017
Tag: cime5.3.0-alpha.18
Answer Changes: None
Tests: scripts_regression_tests.py, hand test xmlquery
ERS.f19_g16.X.yellowstone_intel
1850_DATM%CPLHIST_SLND_CICE_POP2%ECO_DROF%CPLHIST_SGLC_WW3
SMS_D_Mmpi-serial_Ld1.T42_T42.FSCM5A97.hobart_nag
Dependencies:
Brief Summary:
- Updated grid aliases in cesm/config_grids.xml.
- Fix logic in st_archive wrt DOUT_S_SAVE_INTERIM_RESTART_FILES.
- Improve comment for BASELINE status in TestStatus.
- Fix an issue with xmlquery when the --file and --listall flags are used
together.
- Remove grid attribute from compset elements.
- Update cime to support full X configuration.
- Remove empty <Proxy> tag from anlworkstation.
- DOCN aquaplanet from file and new A compsets with DOCN modes.
- Use %CPLHIST for DATM coupler hist forcing.
- Point to gx1v7 domain files that exist.
- Merged recent changes from MCSclimate/mpi-serial into CIME.
Includes new hvector functions.
User interface changes:
- TestStatus changes
PR summary: git log --oneline --first-parent [previous_tag]..master
e9a944c Merge pull request #1585 from alperaltuntas/master
568938d Merge pull request #1573 from jedwards4b/sta_fix
a4352db Merge pull request #1591 from ESMCI/jgfouca/improve_baseline_teststatus_comment
b4182ec Merge pull request #1593 from jedwards4b/xmlquery_and_config_compset
3189a86 Merge pull request #1592 from billsacks/compset_no_grid_attribute
7f6004f Merge pull request #1586 from apcraig/xcase
1ee8025 Merge pull request #1590 from ESMCI/sarich/anlworkstation-remove-proxy-tag
09c5136 Merge pull request #1582 from ESMCI/mvertens/docnmods
8657a18 Merge pull request #1578 from ESMCI/mvertens/datm_cplhist_mod
f109d77 Merge pull request #1567 from mnlevy1981/grids/fix_gx1v7_domain_datestamps
a8cc1a2 Merge pull request #1568 from gold2718/mpi-serial-import
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_machines.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_compsets.xsd
M scripts/Tools/xmlquery
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/case_st_archive.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/xcpl_comps/xshare/dead_mct_mod.F90
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_compsets.xml
A src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
M src/externals/mct/mpi-serial/Makefile
M src/externals/mct/mpi-serial/README
M src/externals/mct/mpi-serial/collective.c
A src/externals/mct/mpi-serial/error.c
A src/externals/mct/mpi-serial/ic_merge.c
M src/externals/mct/mpi-serial/mpi.h
M src/externals/mct/mpi-serial/mpif.h
M src/externals/mct/mpi-serial/tests/ftest_old.F90
M src/externals/mct/mpi-serial/type.c
======================================================================
Originator: Chris Fischer
Date: 5-18-2017
Tag: cime5.3.0-alpha.17
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
scripts_regression_test.py
Dependencies:
Brief Summary:
- Rearranges code for lookups a little in case.py.
- Undo recent change to land domain.
- Fix config pes converter.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d33bc68 Merge pull request #1561 from jedwards4b/lookups_cleanup
3cc8bac Merge pull request #1560 from jedwards4b/undo_land_domain_change
c3458a8 Merge pull request #1557 from ESMCI/sarich/fix-config-pes-converter
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/lib/CIME/case.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2017
Tag: cime5.3.0-alpha.16
Answer Changes: None
Tests: scripts_reggression_tests.py
Dependencies:
Brief Summary:
- Fix bug which was preventing config_compsets from modifying xml
variables.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d4e9285 Merge pull request #1559 from jedwards4b/compset_var_settings
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/case.py
======================================================================
Originator: Jim Edwards
Date: 5-17-2017
Tag: cime5.3.0-alpha.15
Answer Changes: None
Tests: scripts_regression_tests.py
d581e52 (HEAD, origin/master, origin/HEAD, master) Merge pull request #1554 from jedwards4b/eri_histfile_cleanup
906c88a Merge pull request #1556 from ESMCI/mvertens/fix_usermods
d404d35 Merge pull request #1551 from jedwards4b/multi_component_user_mods
7355f9d Merge pull request #1547 from ESMCI/mvertens/convert_stream_tabs
99c59b4 Merge pull request #1552 from jedwards4b/user_compset_message_change
7aebc3e Merge pull request #1553 from jedwards4b/memory_usage_correction
9e81110 Merge pull request #1548 from jedwards4b/improve_user_compset_error_checking
98d386f Merge pull request #1546 from jedwards4b/improve_user_compset_error_checking
980f15d Merge pull request #1542 from jedwards4b/fix_env_run_check_in_tests
======================================================================
Originator: Chris Fischer
Date: 5-15-2017
Tag: cime5.3.0-alpha.14
Answer Changes: None
Tests: scripts_regression_tests.py
hand test 2000_CAM50_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV
ERR.f09_g16.B1850.cheyenne_intel.allactive-defaultio
Dependencies:
Brief Summary:
- Update mct testlist from yellowstone to cheyenne.
- Remove xrof_flood_mode from config_grids assure exactly two grids.
- Add ability to remove tabs in shr_string_lalign.
- Timing should use largest ncpl value not atm value.
- Remove user_mods support from the config_compsets.xml file and adds it
to the config_component.xml file.
- Define the list of expected attributes to the mpirun command so that the
all do not need to be passed in.
- Avoid defining non-existant variable MASK_DOMAIN_FILE.
- Make sure that case.set_value is setting a valid variable and error out
if it is not.
- Improve error message for incorrect grid alias.
- Add a case.test --reset option to manually reset a test to initial
conditions.
- Improve error messages for modify_via_xml and cannot_modify_by_user_nl.
- Only create rest directories if they are going to be populated.
- Allow the user the option of skipping the xmllint validation of cime xml
files.
User interface changes:
- Add --reset option to case.test.
PR summary: git log --oneline --first-parent [previous_tag]..master
71b8edb Merge pull request #1537 from ESMCI/fischer/testlist_cheyenne
7494139 Merge pull request #1535 from jedwards4b/xrof_flood_mode_fixagain
5894c4d Merge pull request #1531 from ESMCI/mvertens/remove_stream_tabs
9f92bf0 Merge pull request #1524 from jedwards4b/correct_ncpl_in_timing
62fa492 Merge pull request #1523 from jedwards4b/user_mods_in_component
a5e9bc0 Merge pull request #1521 from jedwards4b/define_expected_attributes
cecbbd5 Merge pull request #1518 from jedwards4b/no_mask_domain
1bbbfc2 Merge pull request #1517 from jedwards4b/set_value_valid
3bcfbe4 Merge pull request #1515 from jedwards4b/grid_alais_message
94455fc Merge pull request #1502 from jedwards4b/reset_test_case
6ebd989 Merge pull request #1514 from billsacks/modify_via_xml_error_msg
9d865d5 Merge pull request #1511 from jedwards4b/no_interum_dirs
144cc38 Merge pull request #1509 from jedwards4b/allowed_schema_skip
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/template.case.test
M config/cesm/config_grids.xml
M config/cesm/machines/template.case.test
M config/xml_schemas/config_compsets.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/get_timing.py
M src/build_scripts/buildlib.mct
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/share/test/unit/shr_string_test/test_shr_string.pf
M src/share/util/shr_string_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-10-2017
Tag: cime5.3.0-alpha.13
Answer Changes: Round Off
Tests: aux_glc test suite
Dependencies:
Brief Summary:
- New CISM mapping files.
- Fix pylint issues.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
67c14ca Merge pull request #1478 from billsacks/cism_new_mapping_files
affab50 fix pylint issue
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/case.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-9-2017
Tag: cime5.3.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests.py
hand test of xmlquery
ERR.f09_g16.B1850
code_checker
create_test cime_developer
SMS.ne30z60_ne30.F1850
ERS2 test
SMS_Mmpi-serial.f19_g17.X.hobart_intel
Dependencies:
Brief Summary:
- Fixes building when certain path variables have a trailing /
- xmlquery options --file and --listall were not working together, now
they are.
- Fix for SOM bug introduced in PR #1451
- Add new grid aliases for gx3v7 and usgs masks.
- Improve ERR by removing rundir files and recopying from sta rest
directory.
- Change allows the user to specify a file in either the config_pes.xml
or the env_mach_pes.xml format.
- Add skip-preview-namelist to case.submit and case_run.
- Simplify settings in CCSM_CO2_PPMV in config_components_cesm.xml.
- Fix force queue.
- Fix pylint errors.
- Fix bug where file drv_flds_in wasn't being closed after being opened.
- Add missing term for NET WATER BUDGET tables.
- Add some major NCAR contributors to cime.
- Fixes for zlev problem.
- Renamed manage_case to query_config.
- Make alternative implementation for ERS.
- Remove empty mpi-serial settings from config_machines.xml.
- Only warning for single dash.
- Additional fields needed for environment_variables.
- Template files were not correctly upgraded to the new argument oarsing.
- Fix ACME config_machines.xml format.
- Add new runoff -> gx1v6 maps.
- Removed old ncl utilities. Changed the random pertlim generator to allow
more (and flexible) number of ensemble members. Added the capability to
generate 9 time step ensembles for UF-CAM-ECT.
User interface changes:
- xmlquery --file and --listall can now be used together.
- --pesfile argument in create_newcase
- Added --skip-preview-namelist to case.build and
template.case.run
- manage_case -> query_config
--compset -> --compsets
--machine -> --machines
added 'all' option for --compsets
added 'current' and to --machines
- New ERS2 test type.
- Print a warning to stdout if single dash used with multi-char arg.
PR summary: git log --oneline --first-parent [previous_tag]..master
56f5df26 Merge pull request #1495 from ESMCI/mfdeakin-sandia/fix_build_paths
e234bc6e Merge pull request #1504 from jedwards4b/xmlquery_again
10fbc430 Merge pull request #1501 from ESMCI/mvertens/somfix
3beac4ab Merge pull request #1500 from ESMCI/fischer/grid_mask
1ca58a07 Merge pull request #1499 from jedwards4b/err_test_improvement1
18112d92 Merge pull request #1494 from jedwards4b/pesfile_usage
cdcb096b Merge pull request #1471 from ESMCI/erichlf/case_submit/skip_pnl
5684406d Merge pull request #1487 from ESMCI/mvertens/fix_ccsm_co2_ppmv
99f1f5ba Merge pull request #1496 from ESMCI/jgfouca/fix_force_queue
93a452a9 Merge pull request #1490 from ESMCI/jgfouca/fix_pylint_errs
cf204753 Merge pull request #1491 from ESMCI/fischer/readnl_close
0847f8df Merge pull request #1427 from jtruesdal/water_budget
893a6135 Merge pull request #1458 from billsacks/ncar_credits
653dd297 Merge pull request #1469 from ESMCI/mvertens/fixzlev
68f4b5d7 Merge pull request #1388 from ESMCI/erichlf/manage_case
b661f5bd Merge branch 'jgfouca/alternative_impl_for_ers' (PR #1482)
ef7d0fe9 Merge pull request #1482 from ESMCI/jgfouca/alternative_impl_for_ers
7aadd49b Merge pull request #1454 from jedwards4b/mpi-serial-cleanup
4d4281f2 Merge pull request #1474 from jedwards4b/no_error_warning
34d00048 Minor hotfix for ACME config_machines.xml
71064281 Merge pull request #1477 from jedwards4b/env_vars_attributes
9c463bf9 Merge pull request #1476 from ESMCI/jgfouca/fix_acme_template_files
25ce0223 Merge pull request #1475 from
ESMCI/jgfouca/fix_acme_config_mach_xml_format
baaa2cc3 Merge pull request #1472 from mnlevy1981/mapping/runoff_to_gx1v6
00c22c0c Merge pull request #1457 from allibco/master
Modified files: git diff --name-status [previous_tag]
M README.md
M config/acme/machines/config_machines.xml
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/config_tests.xml
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/case.submit
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/err.py
A scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
D scripts/manage_case
A scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/stub_comps/satm/cime_config/config_component.xml
M src/components/stub_comps/sesp/cime_config/config_component.xml
M src/components/stub_comps/sglc/cime_config/config_component.xml
M src/components/stub_comps/sice/cime_config/config_component.xml
M src/components/stub_comps/slnd/cime_config/config_component.xml
M src/components/stub_comps/socn/cime_config/config_component.xml
M src/components/stub_comps/srof/cime_config/config_component.xml
M src/components/stub_comps/swav/cime_config/config_component.xml
M src/components/xcpl_comps/xatm/cime_config/config_component.xml
M src/components/xcpl_comps/xglc/cime_config/config_component.xml
M src/components/xcpl_comps/xice/cime_config/config_component.xml
M src/components/xcpl_comps/xlnd/cime_config/config_component.xml
M src/components/xcpl_comps/xocn/cime_config/config_component.xml
M src/components/xcpl_comps/xrof/cime_config/config_component.xml
M src/components/xcpl_comps/xwav/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/shr/seq_drydep_mod.F90
M src/drivers/mct/shr/shr_ndep_mod.F90
M tools/Readme.configure
M tools/configure
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx1v6_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx1v6_nnsm_e1000r300.nml
A tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.sh
D tools/statistical_ensemble_test/ncl_library/Zscore.ncl
D tools/statistical_ensemble_test/ncl_library/area_avg.ncl
D tools/statistical_ensemble_test/ncl_library/create_ensemble.ncl
D tools/statistical_ensemble_test/ncl_library/global.ncl
D tools/statistical_ensemble_test/ncl_library/plot_rmsz.ncl
D tools/statistical_ensemble_test/ncl_library/print.ncl
D tools/statistical_ensemble_test/ncl_library/rmsz.ncl
D tools/statistical_ensemble_test/ncl_library/vinterp.ncl
M tools/statistical_ensemble_test/single_run.sh
D tools/statistical_ensemble_test/test_run_against_ensemble.ncl
D tools/statistical_ensemble_test/validation_test.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-3-2017
Tag: cime5.3.0-alpha.11
Answer Changes: None
Tests:
- scrtips_regression_tests.py
- ./xmlchange --id CLM_BLDNML_OPTS --val "-bgc bgc -crop -irrig=.true."
- ERP_D.f45_g37_rx1.A.hobart_nag
- one off tests to make sure the new datasets are being run for the gx1v7
but not for other resolutions.
Dependencies:
Brief Summary:
- Update to env_mach_specific.xsd schema for unit_testing attribute and
arguments and arg elements.
- Remove all references to lt_archive which will not be supported in
CESM2.0.
- env_mach_specific.xsd schema was incomplete
- Remove TOTAL_CORES as it was inaccurate in many cases.
- in _check_for_invalid_args ignore quoted strings.
- Add schemas for the 3 remaining case xml files.
- NAG compiler needs an integer width on this read statement
- Update queue selection to take walltime into account.
- Add new CESM gx1v7 runoff maps for use with estuary parameterization.
- Add a --script-root option to create_newcase.
User interface changes:
- Removes TOTAL_CORES
- Changes in how walltime is handled.
PR summary: git log --oneline --first-parent [previous_tag]..master
b255a7c resolve merge conflict
26dcbc4 update to env_mach_specific.xsd schema for unit_testing attribute and arguments and arg elements
3d09285 remove all references to lt_archive which will not be supported in CESM2.0
9900f32 Merge pull request #1467 from jedwards4b/schema_fix
7043e29 Merge branch 'jgfouca/remove_total_cores'
965f63e Merge pull request #1464 from ESMCI/jgfouca/remove_total_cores
6b15377 Merge pull request #1462 from jedwards4b/fix_for_quoted_args
cc323c2 Merge pull request #1461 from jedwards4b/more_schema_definitions
15297cd Merge pull request #1453 from jedwards4b/nag_aquap_fix
ce52822 Merge pull request #1450 from ESMCI/jgfouca/upgrade_queue_selection
5619a82 Merge pull request #1455 from jtruesdal/newmaps
a5da759 Merge pull request #1438 from ESMCI/mfdeakin-sandia/script_root_option
Modified files: git diff --name-status [previous_tag]
M config/acme/config_files.xml
M config/acme/machines/config_batch.xml
D config/acme/machines/config_lt_archive.xml
M config/acme/machines/config_machines.xml
D config/acme/machines/template.lt_archive
M config/acme/machines/userdefined_laptop_template/config_machines.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
D config/cesm/machines/config_lt_archive.xml
M config/cesm/machines/config_machines.xml
D config/cesm/machines/template.lt_archive
M config/cesm/machines/userdefined_laptop_template/config_machines.xml
M config/config_tests.xml
M config/xml_schemas/config_batch.xsd
M config/xml_schemas/config_machines.xsd
M config/xml_schemas/config_machines_template.xml
A config/xml_schemas/env_batch.xsd
A config/xml_schemas/env_mach_pes.xsd
A config/xml_schemas/env_mach_specific.xsd
D scripts/Tools/README.post_process
D scripts/Tools/lt_archive.sh
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
D scripts/lib/CIME/XML/lt_archive.py
M scripts/lib/CIME/case.py
D scripts/lib/CIME/case_lt_archive.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/docn/docn_comp_mod.F90
M src/drivers/mct/cime_config/config_component.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-2-207
Tag: cime5.3.0-alpha.10
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests.py with PIO_VERSION set to 2 in driver config_components.xml
scripts_regression test
ERP_Ln9.f09_f09.F1850_DONOTUSE.yellowstone_intel.cam-outfrq9s_clm5
summarize_cprnc_diffs by hand
code-checker
Dependencies:
Brief Summary:
- Update to version 2.2.1 of the pio external.
- Update the top-level READMEs.
- New optional ndep stream from atm.
- Creation of new aquaplanet capability in DOCN.
- Fix typo in parse_args.
- All command line arguments should conform. Allowed for one exception, the -value option to xmlquery.
- ERP fix again.
- Pick up multi-instance cprnc.out files in summarize_cprnc_diffs.
- Fix an issue with pio1 determining if netcdf4 is available and removes a debug print statement.
- Improve error message when config_files.xml is not found.
- Fix pylint error.
- Put explicit dot in paths in some instructions.
- Remove scripts adjustment of pio settings.
User interface changes:
- Now accepting only conforming command line arguments.
PR summary: git log --oneline --first-parent [previous_tag]..master
0dcd36c Merge pull request #1447 from jedwards4b/pio2_external_update
357ad45 Merge pull request #1432 from ESMCI/rljacob/README-cleanup
c76d946 Merge pull request #1448 from ESMCI/mvertens/ndep
e5f144d Merge pull request #1451 from ESMCI/mvertens/aquap
d4dfbf1 Merge pull request #1452 from jedwards4b/acme_run_template_fix
505ce67 Merge pull request #1393 from jedwards4b/test_cli
c1e5a38 Merge pull request #1445 from jedwards4b/erp_fix_again
f6c05d1 Merge pull request #1442 from billsacks/summarize_cprnc_multiinst
71cc74e Merge pull request #1425 from jedwards4b/pio1_fixes
aa9018a Merge pull request #1440 from jedwards4b/better_msg_for_config_files_not_found
1089e53 Merge pull request #1446 from ESMCI/jgfouca/fix_pylint_err_nml
3a498d2 Merge pull request #1371 from billsacks/source_file_from_path
ae2a5ca Add Sandia Corporation to CIME LICENSE.TXT
7692745 Merge pull request #1441 from jedwards4b/pio_default_settings
Modified files: git diff --name-status [previous_tag]
M LICENSE.TXT
D README
M README.md
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
M config/acme/machines/template.lt_archive
M config/acme/machines/template.st_archive
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/template.case.run
M config/cesm/machines/template.case.test
M config/cesm/machines/template.lt_archive
M config/cesm/machines/template.st_archive
M scripts/Tools/acme_check_env
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case.submit
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/getTiming
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_acme_tests
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/preview_namelists
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/testreporter.py
M scripts/Tools/update_acme_tests
M scripts/Tools/wait_for_tests
M scripts/Tools/xmlchange
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/utils.py
M scripts/manage_case
M scripts/manage_pes
M scripts/query_testlists
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.pio
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/drivers/mct/cime_config/namelist_definition_drv_flds.xml
M src/drivers/mct/shr/seq_flds_mod.F90
A src/drivers/mct/shr/shr_ndep_mod.F90
M src/externals/pio1/pio/CMakeLists.txt
M src/externals/pio1/pio/pionfput_mod.F90.in
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/CTestScript.cmake
M src/externals/pio2/ctest/CTestEnvironment-anlworkstation.cmake
M src/externals/pio2/ctest/CTestEnvironment-nwsc.cmake
A src/externals/pio2/ctest/runcdash-cgd-gnu-openmpi.sh
M src/externals/pio2/ctest/runcdash-cgd-nag.sh
M src/externals/pio2/ctest/runcdash-nwsc-intel-mpiserial.sh
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/ctest/runctest-cgd.sh
M src/externals/pio2/ctest/runctest-nwscla.sh
M src/externals/pio2/doc/source/contributing_code.txt
M src/externals/pio2/examples/c/CMakeLists.txt
A src/externals/pio2/examples/c/darray_async.c
A src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/src/clib/CMakeLists.txt
M src/externals/pio2/src/clib/bget.c
M src/externals/pio2/src/clib/config.h.in
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pio_varm.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/tests/cunit/CMakeLists.txt
M src/externals/pio2/tests/cunit/pio_tests.h
D src/externals/pio2/tests/cunit/test_async_2comp.c
M src/externals/pio2/tests/cunit/test_async_3proc.c
M src/externals/pio2/tests/cunit/test_async_4proc.c
M src/externals/pio2/tests/cunit/test_async_simple.c
M src/externals/pio2/tests/cunit/test_darray_1d.c
M src/externals/pio2/tests/cunit/test_darray_3d.c
A src/externals/pio2/tests/cunit/test_darray_multi.c
M src/externals/pio2/tests/cunit/test_darray_multivar.c
A src/externals/pio2/tests/cunit/test_darray_multivar2.c
A src/externals/pio2/tests/cunit/test_decomp_uneven.c
M src/externals/pio2/tests/cunit/test_decomps.c
M src/externals/pio2/tests/cunit/test_intercomm2.c
M src/externals/pio2/tests/cunit/test_iosystem2_simple.c
M src/externals/pio2/tests/cunit/test_pioc.c
M src/externals/pio2/tests/cunit/test_pioc_fill.c
A src/externals/pio2/tests/cunit/test_rearr.c
M src/externals/pio2/tests/cunit/test_shared.c
M src/externals/pio2/tests/cunit/test_spmd.c
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/util/pio_tutil.F90
M src/share/util/shr_pio_mod.F90
M src/share/util/shr_strdata_mod.F90
M tools/configure
M tools/cprnc/README
M tools/cprnc/summarize_cprnc_diffs
M tools/mapping/check_maps/.gitignore
M tools/mapping/check_maps/README
M tools/mapping/check_maps/src/ESMF_RegridWeightGenCheck.F90
M tools/mapping/check_maps/src/Makefile
M tools/mapping/gen_domain_files/INSTALL
M tools/mapping/gen_domain_files/src/Makefile
M tools/mapping/gen_mapping_files/README
A tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/.gitignore
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/README
M tools/mapping/gen_mapping_files/gen_ESMF_mapping_file/create_ESMF_map.sh
M tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M tools/mapping/map_field/INSTALL
M tools/mapping/map_field/src/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-30-2017
Tag: cime5.3.0-alpha.09
Answer Changes: None
Tests: ERP_Ln9.f09_f09.F1850_DONOTUSE.yellowstone_intel.cam-outfrq9s_clm5
scripts_regression_tests.py --fast, hand test xmlchange and xmlquery
Dependencies:
Brief Summary:
- Fix erp test build.
- Add Support for '+=' in Namelists.
- Add --component Option to preview_namelist.
- Add --file option to xmlquery and enable option in xmlchange.
User interface changes:
- Added support for '+=' to namelist parser.
- Added --component option to preview_namelist.
- New --file option in xmlquery.
PR summary: git log --oneline --first-parent [previous_tag]..master
6d8b24b Merge pull request #1444 from jedwards4b/erp_test_fix
84b7bde Merge pull request #1389 from ESMCI/erichlf/namelist/plusEqual
45af658 Merge pull request #1436 from ESMCI/erichlf/preview_namelists/component
c4d4437 Merge pull request #1419 from jedwards4b/xmlcq_fileoption
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/preview_namelists
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/preview_namelists.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-28-2017
Tag: cime5.3.0-alpha.08
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests, SMS_D_Ld3.f45_g37_rx1.A.hobart_nag,
ERS_Ln9.T62_g37.DTEST.yellowstone_intel, CESM prealpha on hobart_nag
Dependencies: cime_config0.0.1.alpha.07, cism2_1_30, clm4_5_15_r235
Brief Summary:
- Use ESMF7 on yellowstone and cheyenne.
- Pass annual-average fields to GLC.
- Give users more info and control over key run commands.
- Moves unit testing infrastructure from tools/unit_testing to
scripts/fortran_unit_testing.
- There were tabs in create_newcase. None prevented the script from
running, but should be removed for consistency.
- nag compliler needs an additional library flag when built with debug.
- Update case members in case_setup.
- Handle the case when executable is None.
- Fix big mistake in scripts_regression_tests.
- Minor changes to xmlchange.
- Fix minor bug in test_scheduler.
- Rewrite testreporter into python.
- Print time built per model.
- Add input-dir to create_newcase.
- Get unit test build and run working with serial or parallel pFUnit.
- Add Support of true and false in Namelist.
- Remove the cprnc.out files prior to running tests.
- Fix bug where LockedFiles weren't checked if there was a dot in
filepath.
- Addition of new dwav and dlnd compsets and functionality.
- Errput may be empty string or None.
- Return aprun args but use executable string from xml.
- Add illegal char : to check_name test.
- Simplify netcdf lib args on hobart.
- Bug fix for DART in case_st_archive.py.
- Get Fortran unit tests working on cheyenne.
- Two changes to fix the Fortran unit tests that had gotten broken
recently.
- Improve create_test output by dumping case errors directly to screen.
- Fix NODEFAIL test on cheyenne.
- Fix indentation problem in case_setup.
- Allow user_mods directory in compset definition.
- Fix typo in cori-knl bind command.
- Big cs.status upgrade.
- Force user to always go through case.submit.
- Promote to warning if machine doesn't match probed machine.
- Make Machines.get_value more likely to return values of the correct
type.
- Remove conditional pio1 code.
- Fixes for PRE test.
- Set rearr opts using a pio interface.
- Bring in latest version of PIO1 to CIME.
User interface changes:
- Moves run_tests.py to scripts/fortran_unit_testing.
- Adds PET test to cime_developer, PET behavior change.
- Output time per built component.
- config_compilers should now give MPILIB and compile_threaded
attributes for PFUNIT.
- The default mode of operation for run_tests.py is now serial.
- Other components that have unit tests (CLM and CAM) will need to
rework their top-level CMakeLists.txt file slightly.
- Do not allow ':' in testid or case name.
- Output changes for create_test.
- Significant to cs.status.
- Minor output changes to create_newcase.
- New PIO1 interface to set rearranger options.
- Signficant: new preview_run tool and new XML variables.
PR summary: git log --oneline --first-parent [previous_tag]..master
6d8ccb3 Merge pull request #1403 from fvitt/esmf
fe82bd6 Merge pull request #1413 from billsacks/billsacks/glc_tavg_v2
dc29942 Merge pull request #1359 from ESMCI/jgfouca/new_query_tools
9c5b1aa Merge pull request #1428 from billsacks/move_unit_tests
c726ded Merge pull request #1435 from ESMCI/erichlf/create_newcase/tabs2spaces
8924bb3 Merge pull request #1421 from jedwards4b/hobart_nag_fix
f59dd4d Merge pull request #1414 from ESMCI/jgfouca/pet_fix_plus_coverage
67b1be7 Merge pull request #1410 from jedwards4b/executable_none_fix
0fe9e3d Merge pull request #1412 from ESMCI/jgfouca/fix_scripts_regr_test_rc
7c28d90 Merge pull request #1405 from ESMCI/jgfouca/xmlchange_append_add_space
68ab80b Merge pull request #1406 from ESMCI/jgfouca/test_sched_bugfix
da9d3b8 Merge pull request #1299 from ESMCI/fischer/testreporter_rewrite_python
f8f0fec Merge pull request #1402 from ESMCI/jgfouca/show_build_time_per_component
dc1a7ce Merge pull request #1401 from ESMCI/jgfouca/add_input_dir_to_create_newcase
962b20b Merge pull request #1396 from billsacks/compiler_from_macros
af32abd Merge pull request #1395 from ESMCI/erichlf/Build/Namelist.pm
9f5d489 Merge pull request #1394 from jedwards4b/system_test_rerun_improvement
1db632a Merge pull request #1391 from ESMCI/sarich/fix_bug_in_check_lockedfiles
5cda778 Merge pull request #1365 from ESMCI/mvertens/data_wave
2742c17 Merge pull request #1390 from ESMCI/jgfouca/fix_bug_in_errput_run_cmd
6dd85dd Merge pull request #1385 from jedwards4b/aprun_fix
4fb16a1 Merge pull request #1383 from jedwards4b/new_illegal_char
40a6017 Merge pull request #1386 from jedwards4b/hobart_netcdf_slib_fix
5a141f8 Merge pull request #1375 from ESMCI/bertinia/st_archive
06c5645 Merge pull request #1381 from billsacks/cheyenne_unit_tests
9629886 Merge pull request #1378 from jedwards4b/funit_test_fix
d79922e Merge pull request #1377 from ESMCI/jgfouca/improve_create_test_output
9d9f09c Merge pull request #1370 from ESMCI/jgfouca/minor_fix_for_cheyenne
a99eab3 Merge pull request #1373 from jedwards4b/pio_adjust_indentation_fix
ca289d9 Merge pull request #1366 from ESMCI/mvertens/usermods_in_compset
aaee38a Merge pull request #1369 from jedwards4b/cori-knlfix
d0e277d Merge pull request #1363 from ESMCI/jgfouca/big_cs_status_upgrade
dd5a30b Merge pull request #1362 from ESMCI/jgfouca/force_resubmit_to_use_submit
8282a8f Merge pull request #1361 from ESMCI/jgfouca/inform_user_of_machine
2530c66 Merge pull request #1360 from ESMCI/jgfouca/machine_get_value_type
1335a62 Merge pull request #1357 from ESMCI/jayeshkrishna/rem_cond_pio1_code
9903472 Merge pull request #1350 from gold2718/pausePOP
9f9da67 Merge pull request #1354 from ESMCI/jayeshkrishna/pio_use_set_rearr_opts
be0f9a4 Merge pull request #1352 from ESMCI/jayeshkrishna/bring_latest_pio1
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
D README.unit_testing
M config/acme/machines/config_compilers.xml
M config/acme/machines/userdefined_laptop_template/config_compilers.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M config/config_tests.xml
M config/xml_schemas/config_compsets.xsd
M config/xml_schemas/config_grids_v2.xsd
M config/xml_schemas/config_machines.xsd
A scripts/Tools/cs.status
D scripts/Tools/cs_status
A scripts/Tools/preview_run
A scripts/Tools/testreporter.py
M scripts/Tools/xmlchange
M scripts/create_newcase
M scripts/create_test
A scripts/fortran_unit_testing/Examples/circle_area/src/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/circle_area/src/circle.F90
A scripts/fortran_unit_testing/Examples/circle_area/tests/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/circle_area/tests/CTest/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/circle_area/tests/CTest/test_driver.F90
A scripts/fortran_unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/circle_area/tests/pFUnit/test_circle.pf
A scripts/fortran_unit_testing/Examples/interpolate_1d/src/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/interpolate_1d/src/interpolate_1d.F90
A scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CTest/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/interpolate_1d/tests/CTest/test_driver.F90
A scripts/fortran_unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
A scripts/fortran_unit_testing/Examples/interpolate_1d/tests/pFUnit/test_interpolate_point.pf
A scripts/fortran_unit_testing/Examples/test_list.xml
A scripts/fortran_unit_testing/README
A scripts/fortran_unit_testing/python/.gitignore
A scripts/fortran_unit_testing/python/printer.py
A scripts/fortran_unit_testing/python/test_xml_test_list.py
A scripts/fortran_unit_testing/python/xml_test_list.py
A scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/machines.py
A scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
A scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/cs.status.template
A scripts/lib/testreporter.template
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/datm_comp_mod.F90
M src/components/data_comps/desp/desp_comp_mod.F90
M src/components/data_comps/desp/esp_comp_mct.F90
M src/components/data_comps/dice/cime_config/config_component.xml
M src/components/data_comps/dice/cime_config/namelist_definition_dice.xml
M src/components/data_comps/dice/dice_comp_mod.F90
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/data_comps/drof/drof_comp_mod.F90
M src/components/data_comps/dwav/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/config_component.xml
M src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M src/components/data_comps/dwav/dwav_comp_mod.F90
M src/drivers/mct/cime_config/buildexe
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_compsets.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cesm_comp_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/seq_io_mod.F90
M src/drivers/mct/main/seq_rest_mod.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
M src/drivers/mct/unit_test/stubs/CMakeLists.txt
A src/drivers/mct/unit_test/stubs/seq_timemgr_mod.F90
A src/externals/CMake/CIME_initial_setup.cmake
M src/externals/CMake/CIME_utils.cmake
M src/externals/CMake/README.md
M src/externals/CMake/pFUnit_utils.cmake
M src/externals/pio1/pio/CMakeLists.txt
M src/externals/pio1/pio/pio.F90
M src/externals/pio1/pio/piolib_mod.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
D tools/unit_testing/Examples/circle_area/src/CMakeLists.txt
D tools/unit_testing/Examples/circle_area/src/circle.F90
D tools/unit_testing/Examples/circle_area/tests/CMakeLists.txt
D tools/unit_testing/Examples/circle_area/tests/CTest/CMakeLists.txt
D tools/unit_testing/Examples/circle_area/tests/CTest/test_driver.F90
D tools/unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
D tools/unit_testing/Examples/circle_area/tests/pFUnit/test_circle.pf
D tools/unit_testing/Examples/interpolate_1d/src/CMakeLists.txt
D tools/unit_testing/Examples/interpolate_1d/src/interpolate_1d.F90
D tools/unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
D tools/unit_testing/Examples/interpolate_1d/tests/CTest/CMakeLists.txt
D tools/unit_testing/Examples/interpolate_1d/tests/CTest/test_driver.F90
D tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
D tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/test_interpolate_point.pf
D tools/unit_testing/Examples/test_list.xml
D tools/unit_testing/README
D tools/unit_testing/python/.gitignore
D tools/unit_testing/python/comparable.py
D tools/unit_testing/python/environment.py
D tools/unit_testing/python/machine_setup.py
D tools/unit_testing/python/printer.py
D tools/unit_testing/python/test_environment.py
D tools/unit_testing/python/test_xml_test_list.py
D tools/unit_testing/python/test_xml_utils.py
D tools/unit_testing/python/xml_test_list.py
D tools/unit_testing/python/xml_utils.py
D tools/unit_testing/run_tests.py
M utils/perl5lib/Build/Namelist.pm
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-14-2017
Tag: cime5.3.0-alpha.07
Answer Changes: None
Tests on various PRs: by-hand, code_checker, pylint, scripts_regression_tests,
cime_developer with gnu compiler on cheyenne, All gnu debug tests in CESM
test suites, create B compset with ww3 at T31 resolution,
J_TestCreateNewcase, some cesm tests on cori-knl
Dependencies:
Brief Summary:
-Updates to get going on cori-knl
-Update domain_b in nnsm map
-Fix bug where create_test was not handling user-selected projects correctly
in the case where the test_root depended on PROJECT.
-HOMME Improvement
-Unit testing: Determine machine-specific settings automatically
-Mapping/update runoff to ocn
-Fixes an issue with --user-compset flag
-Fixes for cheyenne issue
-Validate the case and test_id arguments
-Add more checks for gnu in debug mode.
-Avoid a problem with pio_typename in clone with keepexe.
-Fix blues NETCDFROOT unresolved error.
-Fix TOTAL_CORES.
-Refactor BUILD_THREADED to match documentation.
-Refactor run_cmd to handle file output streams more easily.
-More-robust way of getting path to create_test.
-Better content in TestStatus.log file.
-Improved formatting/content of TestStatus.log
-Better handling of poorly implemented batch systems.
-Fix atm grid match for T31 atm2wav map.
-Change flag for answer to create_newcase
-Fix bug in xmlquery, add regr test to catch in future
-Improve error message when user forgets --user-compset.
-Cleanup TEST_ROOT if everything works.
-Reduce newlines in CaseStatus.
User interface changes:
-BUILD_THREADED behaves differently
-for create_newcase, --answer becomes --handle-preexisting-dirs
-Formatting changes to CaseStatus
PR summary: git log --oneline --first-parent [previous_tag]..master
30243ac Merge pull request #1351 from jedwards4b/cori_update
1f4c4e9 Merge pull request #1349 from mnlevy1981/mapping/runoff_metadata_bugfix
7664249 Merge pull request #1348 from ESMCI/jgfouca/fix_custom_proj_test_root
6156e0a Merge pull request #1346 from ESMCI/jgfouca/homme_improvement
3779ec1 Merge pull request #1343 from billsacks/run_tests_defaults
5074c4a Merge pull request #1280 from mnlevy1981/mapping/update_runoff_to_ocn
60bfc01 Merge pull request #1341 from jedwards4b/user-compset
5e79b04 Merge pull request #1340 from jedwards4b/cheyenne_fixes
37aac0f Merge pull request #1337 from jedwards4b/validate_case_and_test_id_args
5edf3fa Merge pull request #1339 from billsacks/gnu_debug_checks
82b6181 Merge pull request #1305 from jedwards4b/clone_keepexe_and_pio_typename
4d62d80 Merge pull request #1333 from ESMCI/sarich/fix-blues-netcdfroot
12bc9b3 Merge pull request #1336 from ESMCI/jgfouca/fix_total_cores
1adf8d1 Merge pull request #1335 from ESMCI/jgfouca/cleanup_build_threaded
315e849 Merge pull request #1326 from ESMCI/jgfouca/refactor_run_cmd
997ec60 Merge pull request #1321 from ESMCI/jgfouca/cime_bisect_robustness
cb7bd10 Merge pull request #1317 from ESMCI/jgfouca/better_testlog_content
7fb258b Merge pull request #1316 from ESMCI/jgfouca/handle_titan_batch_errs
2b4f7fe Merge pull request #1320 from billsacks/t31_wav_map
7370b02 Merge pull request #1311 from ESMCI/jgfouca/better_name_for_answer
b14ebe0 Merge pull request #1312 from ESMCI/jgfouca/fix_xmlquery_listall
f741180 Merge pull request #1314 from billsacks/user_compset_errmsg
243fafa Merge pull request #1310 from ESMCI/jgfouca/better_regr_cleanup
a4c7ab7 Merge pull request #1307 from ESMCI/jgfouca/remove_useless_newlines_from_casestatus
Modified files: git diff --name-status [previous_tag]
M README.unit_testing
M config/acme/machines/config_machines.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/xml_schemas/config_machines.xsd
M scripts/Tools/cime_bisect
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component.xml
M src/externals/pio1/timing/COPYING
M src/externals/pio2/src/gptl/COPYING
M src/share/timing/COPYING
M src/share/util/mct_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/INSTALL
M tools/mapping/gen_mapping_files/runoff_to_ocn/README
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx1v7_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx3v7_nnsm_e1000r500.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx1v7_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx3v7_nnsm_e1000r500.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_wr50a_to_ar9v4_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_wr50a_to_gx3v7_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/maps/.gitignore
A tools/mapping/gen_mapping_files/runoff_to_ocn/ncl/merge_mapping_files.ncl
A tools/mapping/gen_mapping_files/runoff_to_ocn/run_merge_mapping_files.sh
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map.nml
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_r05_gx3v7.nml
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_rx1_gx1v6.nml
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_tx01.nml
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_wr50a_ar9v4.nml
D tools/mapping/gen_mapping_files/runoff_to_ocn/runoff_map_wr50a_gx3v7.nml
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/Makefile
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/fixroff_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/kind_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/main.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/map_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/mapsort_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_kind_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_sys_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/shr_timer_mod.F90
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/smooth_mod.F90
M tools/unit_testing/run_tests.py
======================================================================
Originator:Chris Fischer
Date: 4-4-2017
Tag: cime5.3.0-alpha.06
Answer Changes: None
Tests: code_checker, NODEFAIL
Dependencies:
Brief Summary:
- Fix handling of spare nodes
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
95019a3 Merge pull request #1302 from ESMCI/jgfouca/fixes_to_recent_prs
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
======================================================================
Originator: Chris Fischer
Date: 4-4-2017
Tag: cime5.3.0-alpha.05
Answer Changes: None
Tests: scripts_regression_test, code checker
Dependencies:
Brief Summary:
- First try to support titan restart.
- Pull back ACME repo changes of CIME since last subtree split (late
January?) up to March 29 back into CIME master.
- Allow a custom input root through create_test.
- Update pio stubs to include new derived field needed in pio_init.
- Set a default value for esmf_logging so it does not have to appear in
drv_in.
- Add logging options to ESMF_Initialize
- Fix pylint issues.
- Fix manage_case --query-grids for cesm.
- Adds support for namelist entries of the form foo(3) = 'a'
- Add mpilib and compiler command line options to configure.
- summarize_cprnc_diffs: Print unnormalized RMS diffs.
- Make sure pio_typename is valid.
- New hooks for runnning external scripts for pre-run and post-run.
- Enable PIO rearranger options for PIO2.
- code_checker needs to work outside of ESMCI/CIME.
- Fix pylint error in buildnml.
- Add flags to make create_newcase non-interactive.
- Added mct/cime_config/namelist_definition_drv_flds.xml with updated
schema.
- Some driver code no longer needed to do this for cam.
- Supress a future warning on the use of condition in expect subroutine.
- Couple fixes to recent PR that added SUBMIT phase.
User interface changes:
- Add --input-dir argument to create_test
- esmf_logging (and therefore drv_in) are now optional
- New run time XML variable: ESMF_LOGFILE_KIND
- New --answer flag to create_newcase
- Removes a distracting warning
PR summary: git log --oneline --first-parent [previous_tag]..master
eeb1e2c Merge pull request #1275 from ESMCI/jgfouca/titan_restart
fbf1b0c Merge pull request #1287 from ESMCI/agsalin/merge-from-acme-03292017
dda631e Merge pull request #1298 from ESMCI/jgfouca/allow_custom_input_root
2dc9a8a Merge pull request #1301 from jedwards4b/unit_test_stubs_update
3d76b10 Merge pull request #1300 from gold2718/esmfLog
0d320ec Merge pull request #1289 from gold2718/esmfLog
8890873 Merge pull request #1290 from ESMCI/jgfouca/grids_pylint_fixes
55a084b Merge pull request #1285 from ESMCI/mvertens/manage_case
9d8396a Merge pull request #1259 from jedwards4b/index_in_namelist
4e125ee Merge pull request #1268 from jedwards4b/configure_update
9759e15 Merge pull request #1279 from billsacks/summarize_rms
840ae3c Merge pull request #1273 from jedwards4b/pio_typename_fix
07e61ed Merge pull request #1256 from ESMCI/mvertens/phys_cycle
85f831d Merge pull request #1260 from ESMCI/jayeshkrishna/enable_rearr_opts_pio2
fbfa996 Merge pull request #1269 from ESMCI/jgfouca/code_checker_work_outside_esmci
300cbf3 Merge pull request #1253 from ESMCI/jgfouca/pylint_fix_to_buildnml
d44970c Merge pull request #1249 from ESMCI/jgfouca/create_newcase_non_interactive
8270602 Merge pull request #1231 from ESMCI/mvertens/drv_flds_in
5f3072c Merge pull request #1237 from jedwards4b/jpe_fix_atm_simple_settings
ffa61ea Merge pull request #1242 from jedwards4b/jpe/futurewarning
fecaaad Merge pull request #1240 from ESMCI/jgfouca/fixes_to_submit_phase_pr
Modified files: git diff --name-status [previous_tag]
M config/acme/allactive/config_pes.xml
M config/acme/allactive/config_pesall.xml
M config/acme/config_archive.xml
M config/acme/config_files.xml
M config/acme/config_grids.xml
M config/acme/machines/Makefile
M config/acme/machines/config_batch.xml
M config/acme/machines/config_compilers.xml
M config/acme/machines/config_machines.xml
M config/acme/machines/config_pio.xml
A config/acme/machines/syslog.anvil
A config/acme/testmods_dirs/allactive/cam/outfrq9s/xmlchange_cmnds
A config/acme/testmods_dirs/allactive/force_netcdf_pio/shell_commands
A config/acme/testmods_dirs/allactive/force_netcdf_pio/xmlchange_cmnds
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_pio.xml
M config/config_tests.xml
M scripts/Tools/check_input_data
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/homme.py
A scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/namelist_definition.py
A scripts/lib/CIME/aprun.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/update_acme_tests.py
M scripts/manage_case
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/desp/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
D src/drivers/mct/bld/namelist_files/namelist_defaults_drv.xml
D src/drivers/mct/bld/namelist_files/namelist_definition_drv.xml
D src/drivers/mct/bld/namelist_files/namelist_definition_drv_flds.xml
D src/drivers/mct/bld/namelist_files/namelist_definition_modio.xml
D src/drivers/mct/bld/testdir/Buildconf/camconf/drv_flds_in
D src/drivers/mct/bld/testdir/Buildconf/clmconf/drv_flds_in
D src/drivers/mct/bld/testdir/env_build.xml
D src/drivers/mct/bld/testdir/env_case.xml
D src/drivers/mct/bld/testdir/env_mach_pes.xml
D src/drivers/mct/bld/testdir/env_run.xml
D src/drivers/mct/bld/testdir/runtest
D src/drivers/mct/bld/testdir/user_nl_cpl
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
A src/drivers/mct/cime_config/namelist_definition_drv_flds.xml
M src/drivers/mct/main/cesm_driver.F90
M src/drivers/mct/shr/seq_comm_mct.F90
M src/externals/pio1/pio/CMakeLists.txt
M src/share/esmf_wrf_timemgr/ESMF_Stubs.F90
M src/share/unit_test_stubs/pio/pio.F90.in
M src/share/util/shr_pio_mod.F90
M tools/Readme.configure
M tools/configure
M tools/cprnc/summarize_cprnc_diffs
M tools/mapping/map_field/src/map_field.F90
======================================================================
Originator: Chris Fischer
Date: 3-14-2017
Tag: cime5.3.0-alpha.04
Answer Changes: Answer changes for gx3v7
Tests: scripts_regression_test, SMS.f09_g16.B1850
Dependencies:
Brief Summary:
-Need to set RTM to NULL in both cases in order to have this work with fix
needed for upcoming pythonization of rtm and mosart buildnml
-Improve create_test output
-Remove a misleading print statement from tests.
-Better way to handle batch errors.
-Change in location of $SRCROOT/config/allactive to $SRCROOT/cime_config.
-Update so that all relevent grids contain a mask variable.
User interface changes: New SUBMIT phase!
PR summary: git log --oneline --first-parent [previous_tag]..master
34a244a Merge pull request #1239 from ESMCI/mvertens/fix_ssptest
867711d Merge pull request #1238 from ESMCI/jgfouca/create_test_better_output
d050c08 Merge pull request #1235 from jedwards4b/mask_updates
5058c33 Merge pull request #1234 from ESMCI/fischer/config_cesm_allactive_mv
64d6bd2 Merge pull request #1230 from ESMCI/jgfouca/add_submit_phase_2
dec7437 Merge pull request #1232 from jedwards4b/remove_incorrect_statement
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/xml_schemas/config_grids_v2.xsd
M scripts/lib/CIME/SystemTests/ssp.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/tests/scripts_regression_tests.p
======================================================================
Originator: Chris Fischer
Date: 3-11-2017
Tag: cime5.3.0-alpha.03
Answer Changes: None
Tests: scripts_regression_tests, various CESM tests.
Dependencies:
Brief Summary:
Added new aliases for resolutions supporting a gx1v7 mask.
Move location of config/cesm/allactive.
Get rid of hard coded comp_class settings and use get_values instead.
Fix build model message.
Ignore prereq if forced.
Additional include path needed for cmake check_function_exists.
PIO 2 import.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
3627e16 Merge pull request #1228 from jtruesdal/add_gx1v7
7b10920 Merge pull request #1227 from ESMCI/fischer/config_cesm_allactive_mv
ab579b3 Merge pull request #1226 from jedwards4b/compclasses_cleanup
dc0a87c Merge pull request #1225 from ESMCI/jgfouca/fix_build_msg
5f4f989 Merge pull request #1218 from jedwards4b/ignore_prereq_if_forced
ff3d97f Merge pull request #1219 from jedwards4b/cmake_module_fix
37fe05b Merge pull request #1202 from jedwards4b/pio2_import
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/Makefile
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/Makefile
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/test_scheduler.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/docn/cime_config/config_component.xml
M src/externals/pio2/CMakeLists.txt
M src/externals/pio2/CTestConfig.cmake
M src/externals/pio2/CTestScript.cmake
M src/externals/pio2/cmake/FindNetCDF.cmake
M src/externals/pio2/cmake/LibCheck.cmake
M src/externals/pio2/cmake/LibMPI.cmake
A src/externals/pio2/cmake/mpiexec.nwscla
A src/externals/pio2/cmake/mpiexec.olcf
A src/externals/pio2/ctest/CTestEnvironment-anlworkstation.cmake
M src/externals/pio2/ctest/CTestEnvironment-nwsc.cmake
A src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M src/externals/pio2/ctest/runcdash-alcf-ibm.sh
A src/externals/pio2/ctest/runcdash-anlworkstation.sh
M src/externals/pio2/ctest/runcdash-cgd-nag.sh
M src/externals/pio2/ctest/runcdash-nersc-cray.sh
M src/externals/pio2/ctest/runcdash-nersc-intel.sh
M src/externals/pio2/ctest/runcdash-nwsc-gnu.sh
M src/externals/pio2/ctest/runcdash-nwsc-intel-mpiserial.sh
M src/externals/pio2/ctest/runcdash-nwsc-intel.sh
M src/externals/pio2/ctest/runcdash-nwsc-pgi.sh
A src/externals/pio2/ctest/runcdash-nwscla-intel.sh
A src/externals/pio2/ctest/runctest-anlworkstation.sh
M src/externals/pio2/ctest/runctest-cgd.sh
M src/externals/pio2/ctest/runctest-nersc.sh
A src/externals/pio2/ctest/runctest-nwscla.sh
M src/externals/pio2/doc/CMakeLists.txt
M src/externals/pio2/doc/Doxyfile.in
M src/externals/pio2/doc/source/Error.txt
M src/externals/pio2/doc/source/Examples.txt
M src/externals/pio2/doc/source/Installing.txt
A src/externals/pio2/doc/source/Testing.txt
M src/externals/pio2/doc/source/base.txt
A src/externals/pio2/doc/source/contributing_code.txt
M src/externals/pio2/doc/source/mach_walkthrough.txt
M src/externals/pio2/examples/CMakeLists.txt
M src/externals/pio2/examples/c/CMakeLists.txt
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/example2.c
M src/externals/pio2/examples/c/examplePio.c
A src/externals/pio2/examples/c/valsupp_example1.supp
M src/externals/pio2/examples/f03/CMakeLists.txt
M src/externals/pio2/examples/f03/examplePio.f90
M src/externals/pio2/src/CMakeLists.txt
M src/externals/pio2/src/clib/CMakeLists.txt
M src/externals/pio2/src/clib/bget.c
M src/externals/pio2/src/clib/bget.h
M src/externals/pio2/src/clib/config.h.in
D src/externals/pio2/src/clib/ncparser.pl
D src/externals/pio2/src/clib/ncputgetparser.pl
M src/externals/pio2/src/clib/pio.h
D src/externals/pio2/src/clib/pio_c_get_template.c
D src/externals/pio2/src/clib/pio_c_put_template.c
D src/externals/pio2/src/clib/pio_c_template.c
M src/externals/pio2/src/clib/pio_darray.c
A src/externals/pio2/src/clib/pio_darray_int.c
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
A src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
A src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
A src/externals/pio2/src/clib/pio_varm.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/clib/topology.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_types.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfget_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
M src/externals/pio2/src/gptl/CMakeLists.txt
M src/externals/pio2/src/gptl/gptl.c
M src/externals/pio2/src/gptl/perf_mod.F90
M src/externals/pio2/tests/CMakeLists.txt
A src/externals/pio2/tests/cunit/CMakeLists.txt
A src/externals/pio2/tests/cunit/pio_tests.h
A src/externals/pio2/tests/cunit/test_async_2comp.c
A src/externals/pio2/tests/cunit/test_async_3proc.c
A src/externals/pio2/tests/cunit/test_async_4proc.c
A src/externals/pio2/tests/cunit/test_async_simple.c
A src/externals/pio2/tests/cunit/test_common.c
A src/externals/pio2/tests/cunit/test_darray.c
A src/externals/pio2/tests/cunit/test_darray_1d.c
A src/externals/pio2/tests/cunit/test_darray_3d.c
A src/externals/pio2/tests/cunit/test_darray_multivar.c
A src/externals/pio2/tests/cunit/test_decomps.c
A src/externals/pio2/tests/cunit/test_intercomm2.c
A src/externals/pio2/tests/cunit/test_iosystem2.c
A src/externals/pio2/tests/cunit/test_iosystem2_simple.c
A src/externals/pio2/tests/cunit/test_iosystem2_simple2.c
A src/externals/pio2/tests/cunit/test_iosystem3.c
A src/externals/pio2/tests/cunit/test_iosystem3_simple.c
A src/externals/pio2/tests/cunit/test_iosystem3_simple2.c
A src/externals/pio2/tests/cunit/test_pioc.c
A src/externals/pio2/tests/cunit/test_pioc_fill.c
A src/externals/pio2/tests/cunit/test_pioc_putget.c
A src/externals/pio2/tests/cunit/test_pioc_unlim.c
A src/externals/pio2/tests/cunit/test_shared.c
A src/externals/pio2/tests/cunit/test_spmd.c
M src/externals/pio2/tests/general/CMakeLists.txt
A src/externals/pio2/tests/general/README.md
M src/externals/pio2/tests/general/ncdf_fail.F90.in
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
A src/externals/pio2/tests/general/ncdf_inq.F90.in
D src/externals/pio2/tests/general/pio_decomp_fillval2.F90
A src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_2d.F90.in
A src/externals/pio2/tests/general/pio_decomp_tests_3d.F90.in
M src/externals/pio2/tests/general/pio_file_simple_tests.F90.in
A src/externals/pio2/tests/general/pio_iosystem_tests.F90.in
A src/externals/pio2/tests/general/pio_iosystem_tests2.F90.in
A src/externals/pio2/tests/general/pio_iosystem_tests3.F90.in
A src/externals/pio2/tests/general/pio_rearr.F90.in
A src/externals/pio2/tests/general/pio_rearr_opts.F90.in
A src/externals/pio2/tests/general/pio_rearr_opts2.F90.in
M src/externals/pio2/tests/general/test_memleak.c
M src/externals/pio2/tests/general/util/pio_tf_f90gen.pl
M src/externals/pio2/tests/general/util/pio_tutil.F90
M src/externals/pio2/tests/performance/CMakeLists.txt
M src/externals/pio2/tests/unit/CMakeLists.txt
D src/externals/pio2/tests/unit/README
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/externals/pio2/tests/unit/global_vars.F90
M src/externals/pio2/tests/unit/nc_set_log_level2.c
M src/externals/pio2/tests/unit/ncdf_tests.F90
D src/externals/pio2/tests/unit/test_names.c
D src/externals/pio2/tests/unit/test_nc4.c
======================================================================
Originator: Chris Fischer
Date: 3-7-2017
Tag: cime5.3.0-alpha.02
Answer Changes: None
Tests:
Dependencies:
Brief Summary: Revert PR# 1210, remove hardcoded compclasses
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
4cc7e22 Merge pull request #1213 from ESMCI/revert-1210-compclasses_cleanup
Modified files: git diff --name-status [previous_tag]
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/get_timing.py
======================================================================
Originator: Chris Fischer
Date: 3-6-2017
Tag: cime5.3.0-alpha.01
Answer Changes: None
Tests: code_checker,hist_utils.py,scripts_regression_tests.py, on
different PRs..
Dependencies:
Brief Summary:
- Adjust pio layout if pe layout is changed.
- Make baseline perms setting more robust.
- Allows user to rm -rf their build area and rebuild without having
to re-run case.setup.
- Big refactor of CaseStatus management.
- cdf64 only valid for serial netcdf, fix seq test
- Fix bug in ERP namelist comparison.
- Refactor env_batch
- fix issue with compset not printing to timing file
- copy rather than follow links in create_clone
- update compare_xml to find more differences
- remove hardcoded compclasses
User interface changes:
- case.setup has a new option --no-adjust-pio
- case.build behavior slightly different case.build behavior slightly
different
- CaseStatus will look slightly different
- env_batch.xml now looks different
PR summary: git log --oneline --first-parent [previous_tag]..master
3fd75db Merge pull request #1210 from jedwards4b/compclasses_cleanup
78cab9a Merge pull request #1207 from jedwards4b/fix_compare_xml
bd0f19d Merge pull request #1209 from jedwards4b/symlinks_in_clone
d308873 Merge pull request #1208 from jedwards4b/fix_compset_not_in_timing
77dc910 Merge pull request #1204 from ESMCI/jgfouca/refactor_env_batch
c10fe46 Merge pull request #1203 from ESMCI/jgfouca/fix_erp_namelist_issue
30e8e79 Merge pull request #1200 from jedwards4b/seq_test_fix
5eee02a Merge pull request #1199 from ESMCI/jgfouca/refactor_case_status
4219bfd Merge pull request #1196 from ESMCI/jgfouca/build_needs_to_make_dirs
33ac01a Merge pull request #1197 from ESMCI/jgfouca/minor_hist_chg
7e7f805 Merge pull request #1195 from jedwards4b/pio_layout_adjust
0131a12 resolve merge conflicts
6c93fc3 Merge branch 'agsalin/mkdir_src'
215e459 Merge pull request #1182 from jedwards4b/config_archive_split
Modified files: git diff --name-status [previous_tag]
M CMakeLists.txt
M ChangeLog
D cime_config/acme/allactive/config_compsets.xml
D cime_config/acme/allactive/config_compsets.xml.cime2
D cime_config/acme/allactive/config_pes.xml
D cime_config/acme/allactive/config_pes.xml.cime2
D cime_config/acme/allactive/config_pesall.xml
D cime_config/acme/allactive/testlist_allactive.xml
D cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
D cime_config/acme/allactive/usermods_dirs/b1850/shell_commands
D cime_config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
D cime_config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
D cime_config/acme/config_archive.xml
D cime_config/acme/config_files.xml
D cime_config/acme/config_grids.xml
D cime_config/acme/machines/Depends.cetus
D cime_config/acme/machines/Depends.corip1
D cime_config/acme/machines/Depends.cray
D cime_config/acme/machines/Depends.gnu
D cime_config/acme/machines/Depends.intel
D cime_config/acme/machines/Depends.intel14
D cime_config/acme/machines/Depends.intelmic
D cime_config/acme/machines/Depends.intelmic14
D cime_config/acme/machines/Depends.mira
D cime_config/acme/machines/Depends.nag
D cime_config/acme/machines/Depends.titan.cray
D cime_config/acme/machines/Depends.titan.intel
D cime_config/acme/machines/Depends.titan.pgi
D cime_config/acme/machines/Depends.titan.pgiacc
D cime_config/acme/machines/Makefile
D cime_config/acme/machines/README
D cime_config/acme/machines/config_batch.xml
D cime_config/acme/machines/config_batch.xsd
D cime_config/acme/machines/config_compilers.xml
D cime_config/acme/machines/config_lt_archive.xml
D cime_config/acme/machines/config_machines.xml
D cime_config/acme/machines/config_pio.xml
D cime_config/acme/machines/mkDepends
D cime_config/acme/machines/mkSrcfiles
D cime_config/acme/machines/syslog.cetus
D cime_config/acme/machines/syslog.cori-haswell
D cime_config/acme/machines/syslog.cori-knl
D cime_config/acme/machines/syslog.edison
D cime_config/acme/machines/syslog.mira
D cime_config/acme/machines/syslog.noop
D cime_config/acme/machines/syslog.titan
D cime_config/acme/machines/template.case.run
D cime_config/acme/machines/template.case.test
D cime_config/acme/machines/template.lt_archive
D cime_config/acme/machines/template.ocn_diagnostics
D cime_config/acme/machines/template.st_archive
D cime_config/acme/machines/template.timeseries
D cime_config/acme/machines/userdefined_laptop_template/README.md
D cime_config/acme/machines/userdefined_laptop_template/config_compilers.xml
D cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
D cime_config/acme/machines/userdefined_laptop_template/config_pes.xml
D cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
D cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
D cime_config/buildlib.csm_share
D cime_config/buildlib.gptl
D cime_config/buildlib.mct
D cime_config/buildlib.mpi-serial
D cime_config/buildlib.pio
D cime_config/cesm/config_archive.xml
D cime_config/cesm/config_files.xml
D cime_config/cesm/config_grids.xml
D cime_config/cesm/machines/Depends.babbageKnc
D cime_config/cesm/machines/Depends.bluewaters
D cime_config/cesm/machines/Depends.corip1
D cime_config/cesm/machines/Depends.cray
D cime_config/cesm/machines/Depends.gnu
D cime_config/cesm/machines/Depends.goldbach
D cime_config/cesm/machines/Depends.intel
D cime_config/cesm/machines/Depends.intel14
D cime_config/cesm/machines/Depends.intelmic
D cime_config/cesm/machines/Depends.intelmic14
D cime_config/cesm/machines/Depends.mira
D cime_config/cesm/machines/Depends.nag
D cime_config/cesm/machines/Makefile
D cime_config/cesm/machines/README
D cime_config/cesm/machines/config_batch.xml
D cime_config/cesm/machines/config_compilers.xml
D cime_config/cesm/machines/config_lt_archive.xml
D cime_config/cesm/machines/config_machines.xml
D cime_config/cesm/machines/config_pio.xml
D cime_config/cesm/machines/mkDepends
D cime_config/cesm/machines/mkSrcfiles
D cime_config/cesm/machines/nag_mpi_argument.txt
D cime_config/cesm/machines/template.case.run
D cime_config/cesm/machines/template.case.test
D cime_config/cesm/machines/template.lt_archive
D cime_config/cesm/machines/template.st_archive
D cime_config/cesm/machines/userdefined_laptop_template/README.md
D cime_config/cesm/machines/userdefined_laptop_template/config_compilers.xml
D cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
D cime_config/cesm/machines/userdefined_laptop_template/config_pes.xml
D cime_config/config_headers.xml
D cime_config/config_tests.xml
D cime_config/xml_schemas/archive.xsd
D cime_config/xml_schemas/cimeteststatus.xsd
D cime_config/xml_schemas/config_batch.xsd
D cime_config/xml_schemas/config_compilers_v2.xsd
D cime_config/xml_schemas/config_compsets.xsd
D cime_config/xml_schemas/config_grids_v2.xsd
D cime_config/xml_schemas/config_machines.xsd
D cime_config/xml_schemas/config_machines_template.xml
D cime_config/xml_schemas/config_pes.xsd
D cime_config/xml_schemas/entry_id.xsd
D cime_config/xml_schemas/entry_id_base.xsd
D cime_config/xml_schemas/entry_id_namelist.xsd
D cime_config/xml_schemas/testlist.xsd
D components/data_comps/datm/atm_comp_mct.F90
D components/data_comps/datm/cime_config/buildlib
D components/data_comps/datm/cime_config/buildnml
D components/data_comps/datm/cime_config/config_component.xml
D components/data_comps/datm/cime_config/namelist_definition_datm.xml
D components/data_comps/datm/cime_config/user_nl_datm
D components/data_comps/datm/datm_comp_mod.F90
D components/data_comps/datm/datm_shr_mod.F90
D components/data_comps/datm/doc/SOM.pdf
D components/data_comps/datm/doc/bookinfo.xml
D components/data_comps/datm/doc/datacomps.xml
D components/data_comps/datm/doc/intro.xml
D components/data_comps/datm/doc/rundocbook.csh
D components/data_comps/datm/doc/streams.xml
D components/data_comps/datm/doc/ug.xml
D components/data_comps/desp/cime_config/buildlib
D components/data_comps/desp/cime_config/buildnml
D components/data_comps/desp/cime_config/config_component.xml
D components/data_comps/desp/cime_config/namelist_definition_desp.xml
D components/data_comps/desp/cime_config/user_nl_desp
D components/data_comps/desp/desp_comp_mod.F90
D components/data_comps/desp/esp_comp_mct.F90
D components/data_comps/desp/esp_utils.F90
D components/data_comps/dice/cime_config/buildlib
D components/data_comps/dice/cime_config/buildnml
D components/data_comps/dice/cime_config/config_component.xml
D components/data_comps/dice/cime_config/namelist_definition_dice.xml
D components/data_comps/dice/cime_config/user_nl_dice
D components/data_comps/dice/dice_comp_mod.F90
D components/data_comps/dice/ice_comp_mct.F90
D components/data_comps/dlnd/cime_config/buildlib
D components/data_comps/dlnd/cime_config/buildnml
D components/data_comps/dlnd/cime_config/config_component.xml
D components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
D components/data_comps/dlnd/cime_config/user_nl_dlnd
D components/data_comps/dlnd/dlnd_comp_mod.F90
D components/data_comps/dlnd/lnd_comp_mct.F90
D components/data_comps/docn/cime_config/buildlib
D components/data_comps/docn/cime_config/buildnml
D components/data_comps/docn/cime_config/config_component.xml
D components/data_comps/docn/cime_config/namelist_definition_docn.xml
D components/data_comps/docn/cime_config/user_nl_docn
D components/data_comps/docn/docn_comp_mod.F90
D components/data_comps/docn/ocn_comp_mct.F90
D components/data_comps/docn/tools/pop_som_frc/README
D components/data_comps/docn/tools/pop_som_frc/SOM.doc
D components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D components/data_comps/docn/tools/pop_som_frc/pop_frc.csh
D components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl
D components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl
D components/data_comps/docn/tools/pop_som_frc/pop_interp.ncl
D components/data_comps/docn/tools/pop_som_frc/read_from_mss.csh
D components/data_comps/docn/tools/pop_som_frc/read_from_mss_month.csh
D components/data_comps/drof/cime_config/buildlib
D components/data_comps/drof/cime_config/buildnml
D components/data_comps/drof/cime_config/config_component.xml
D components/data_comps/drof/cime_config/namelist_definition_drof.xml
D components/data_comps/drof/cime_config/user_nl_drof
D components/data_comps/drof/drof_comp_mod.F90
D components/data_comps/drof/rof_comp_mct.F90
D components/data_comps/dwav/README
D components/data_comps/dwav/bld/README
D components/data_comps/dwav/cime_config/buildlib
D components/data_comps/dwav/cime_config/buildnml
D components/data_comps/dwav/cime_config/config_component.xml
D components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
D components/data_comps/dwav/cime_config/user_nl_dwav
D components/data_comps/dwav/dwav_comp_mod.F90
D components/data_comps/dwav/wav_comp_mct.F90
D components/stub_comps/satm/cime_config/buildlib
D components/stub_comps/satm/cime_config/buildnml
D components/stub_comps/satm/cime_config/config_component.xml
D components/stub_comps/satm/cpl/atm_comp_mct.F90
D components/stub_comps/sesp/cime_config/buildlib
D components/stub_comps/sesp/cime_config/buildnml
D components/stub_comps/sesp/cime_config/config_component.xml
D components/stub_comps/sesp/cpl/esp_comp_mct.F90
D components/stub_comps/sglc/cime_config/buildlib
D components/stub_comps/sglc/cime_config/buildnml
D components/stub_comps/sglc/cime_config/config_component.xml
D components/stub_comps/sglc/cpl/glc_comp_mct.F90
D components/stub_comps/sice/cime_config/buildlib
D components/stub_comps/sice/cime_config/buildnml
D components/stub_comps/sice/cime_config/config_component.xml
D components/stub_comps/sice/cpl/ice_comp_mct.F90
D components/stub_comps/slnd/cime_config/buildlib
D components/stub_comps/slnd/cime_config/buildnml
D components/stub_comps/slnd/cime_config/config_component.xml
D components/stub_comps/slnd/cpl/lnd_comp_mct.F90
D components/stub_comps/socn/cime_config/buildlib
D components/stub_comps/socn/cime_config/buildnml
D components/stub_comps/socn/cime_config/config_component.xml
D components/stub_comps/socn/cpl/ocn_comp_mct.F90
D components/stub_comps/srof/cime_config/buildlib
D components/stub_comps/srof/cime_config/buildnml
D components/stub_comps/srof/cime_config/config_component.xml
D components/stub_comps/srof/cpl/rof_comp_mct.F90
D components/stub_comps/swav/cime_config/buildlib
D components/stub_comps/swav/cime_config/buildnml
D components/stub_comps/swav/cime_config/config_component.xml
D components/stub_comps/swav/cpl/wav_comp_mct.F90
D components/xcpl_comps/xatm/cime_config/buildlib
D components/xcpl_comps/xatm/cime_config/buildnml
D components/xcpl_comps/xatm/cime_config/config_component.xml
D components/xcpl_comps/xatm/cpl/atm_comp_mct.F90
D components/xcpl_comps/xglc/cime_config/buildlib
D components/xcpl_comps/xglc/cime_config/buildnml
D components/xcpl_comps/xglc/cime_config/config_component.xml
D components/xcpl_comps/xglc/cpl/glc_comp_mct.F90
D components/xcpl_comps/xice/cime_config/buildlib
D components/xcpl_comps/xice/cime_config/buildnml
D components/xcpl_comps/xice/cime_config/config_component.xml
D components/xcpl_comps/xice/cpl/ice_comp_mct.F90
D components/xcpl_comps/xlnd/cime_config/buildlib
D components/xcpl_comps/xlnd/cime_config/buildnml
D components/xcpl_comps/xlnd/cime_config/config_component.xml
D components/xcpl_comps/xlnd/cpl/lnd_comp_mct.F90
D components/xcpl_comps/xocn/cime_config/buildlib
D components/xcpl_comps/xocn/cime_config/buildnml
D components/xcpl_comps/xocn/cime_config/config_component.xml
D components/xcpl_comps/xocn/cpl/ocn_comp_mct.F90
D components/xcpl_comps/xrof/cime_config/buildlib
D components/xcpl_comps/xrof/cime_config/buildnml
D components/xcpl_comps/xrof/cime_config/config_component.xml
D components/xcpl_comps/xrof/cpl/rof_comp_mct.F90
D components/xcpl_comps/xshare/dead_data_mod.F90
D components/xcpl_comps/xshare/dead_mct_mod.F90
D components/xcpl_comps/xshare/dead_mod.F90
D components/xcpl_comps/xwav/cime_config/buildlib
D components/xcpl_comps/xwav/cime_config/buildnml
D components/xcpl_comps/xwav/cime_config/config_component.xml
D components/xcpl_comps/xwav/cpl/wav_comp_mct.F90
A config/acme/allactive/config_compsets.xml
A config/acme/allactive/config_compsets.xml.cime2
A config/acme/allactive/config_pes.xml
A config/acme/allactive/config_pes.xml.cime2
A config/acme/allactive/config_pesall.xml
A config/acme/allactive/testlist_allactive.xml
A config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
A config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
A config/acme/allactive/usermods_dirs/b1850/shell_commands
A config/acme/allactive/usermods_dirs/b1850_cism/include_user_mods
A config/acme/allactive/usermods_dirs/b1850_cism/user_nl_cism
A config/acme/config_archive.xml
A config/acme/config_files.xml
A config/acme/config_grids.xml
A config/acme/machines/Depends.cetus
A config/acme/machines/Depends.corip1
A config/acme/machines/Depends.cray
A config/acme/machines/Depends.gnu
A config/acme/machines/Depends.intel
A config/acme/machines/Depends.intel14
A config/acme/machines/Depends.intelmic
A config/acme/machines/Depends.intelmic14
A config/acme/machines/Depends.mira
A config/acme/machines/Depends.nag
A config/acme/machines/Depends.titan.cray
A config/acme/machines/Depends.titan.intel
A config/acme/machines/Depends.titan.pgi
A config/acme/machines/Depends.titan.pgiacc
A config/acme/machines/Makefile
A config/acme/machines/README
A config/acme/machines/config_batch.xml
A config/acme/machines/config_batch.xsd
A config/acme/machines/config_compilers.xml
A config/acme/machines/config_lt_archive.xml
A config/acme/machines/config_machines.xml
A config/acme/machines/config_pio.xml
A config/acme/machines/mkDepends
A config/acme/machines/mkSrcfiles
A config/acme/machines/syslog.cetus
A config/acme/machines/syslog.cori-haswell
A config/acme/machines/syslog.cori-knl
A config/acme/machines/syslog.edison
A config/acme/machines/syslog.mira
A config/acme/machines/syslog.noop
A config/acme/machines/syslog.titan
A config/acme/machines/template.case.run
A config/acme/machines/template.case.test
A config/acme/machines/template.lt_archive
A config/acme/machines/template.ocn_diagnostics
A config/acme/machines/template.st_archive
A config/acme/machines/template.timeseries
A config/acme/machines/userdefined_laptop_template/README.md
A config/acme/machines/userdefined_laptop_template/config_compilers.xml
A config/acme/machines/userdefined_laptop_template/config_machines.xml
A config/acme/machines/userdefined_laptop_template/config_pes.xml
A config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
A config/cesm/config_archive.xml
A config/cesm/config_files.xml
A config/cesm/config_grids.xml
A config/cesm/machines/Depends.babbageKnc
A config/cesm/machines/Depends.bluewaters
A config/cesm/machines/Depends.corip1
A config/cesm/machines/Depends.cray
A config/cesm/machines/Depends.gnu
A config/cesm/machines/Depends.goldbach
A config/cesm/machines/Depends.intel
A config/cesm/machines/Depends.intel14
A config/cesm/machines/Depends.intelmic
A config/cesm/machines/Depends.intelmic14
A config/cesm/machines/Depends.mira
A config/cesm/machines/Depends.nag
A config/cesm/machines/Makefile
A config/cesm/machines/README
A config/cesm/machines/config_batch.xml
A config/cesm/machines/config_compilers.xml
A config/cesm/machines/config_lt_archive.xml
A config/cesm/machines/config_machines.xml
A config/cesm/machines/config_pio.xml
A config/cesm/machines/mkDepends
A config/cesm/machines/mkSrcfiles
A config/cesm/machines/nag_mpi_argument.txt
A config/cesm/machines/template.case.run
A config/cesm/machines/template.case.test
A config/cesm/machines/template.lt_archive
A config/cesm/machines/template.st_archive
A config/cesm/machines/userdefined_laptop_template/README.md
A config/cesm/machines/userdefined_laptop_template/config_compilers.xml
A config/cesm/machines/userdefined_laptop_template/config_machines.xml
A config/cesm/machines/userdefined_laptop_template/config_pes.xml
A config/config_headers.xml
A config/config_tests.xml
A config/xml_schemas/cimeteststatus.xsd
A config/xml_schemas/config_archive.xsd
A config/xml_schemas/config_batch.xsd
A config/xml_schemas/config_compilers_v2.xsd
A config/xml_schemas/config_compsets.xsd
A config/xml_schemas/config_grids_v2.xsd
A config/xml_schemas/config_machines.xsd
A config/xml_schemas/config_machines_template.xml
A config/xml_schemas/config_pes.xsd
A config/xml_schemas/entry_id.xsd
A config/xml_schemas/entry_id_base.xsd
A config/xml_schemas/entry_id_namelist.xsd
A config/xml_schemas/env_archive.xsd
A config/xml_schemas/env_entry_id.xsd
A config/xml_schemas/testlist.xsd
D driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
D driver_cpl/bld/namelist_files/namelist_definition_drv.xml
D driver_cpl/bld/namelist_files/namelist_definition_drv_flds.xml
D driver_cpl/bld/namelist_files/namelist_definition_modio.xml
D driver_cpl/bld/testdir/Buildconf/camconf/drv_flds_in
D driver_cpl/bld/testdir/Buildconf/clmconf/drv_flds_in
D driver_cpl/bld/testdir/env_build.xml
D driver_cpl/bld/testdir/env_case.xml
D driver_cpl/bld/testdir/env_mach_pes.xml
D driver_cpl/bld/testdir/env_run.xml
D driver_cpl/bld/testdir/runtest
D driver_cpl/bld/testdir/user_nl_cpl
D driver_cpl/cime_config/buildexe
D driver_cpl/cime_config/buildnml
D driver_cpl/cime_config/config_component.xml
D driver_cpl/cime_config/config_component_acme.xml
D driver_cpl/cime_config/config_component_cesm.xml
D driver_cpl/cime_config/config_compsets.xml
D driver_cpl/cime_config/config_pes.xml
D driver_cpl/cime_config/namelist_definition_drv.xml
D driver_cpl/cime_config/namelist_definition_modelio.xml
D driver_cpl/cime_config/testdefs/testlist_drv.xml
D driver_cpl/cime_config/testdefs/testmods_dirs/drv/5steps/shell_commands
D driver_cpl/cime_config/user_nl_cpl
D driver_cpl/doc/bookinfo.xml
D driver_cpl/doc/chap1.xml
D driver_cpl/doc/chap2.xml
D driver_cpl/doc/figx1.jpg
D driver_cpl/doc/namelist.xml
D driver_cpl/doc/rundocbook.csh
D driver_cpl/doc/stylesheet.dsl
D driver_cpl/doc/ug.xml
D driver_cpl/driver/CMakeLists.txt
D driver_cpl/driver/cesm_comp_mod.F90
D driver_cpl/driver/cesm_driver.F90
D driver_cpl/driver/component_mod.F90
D driver_cpl/driver/component_type_mod.F90
D driver_cpl/driver/cplcomp_exchange_mod.F90
D driver_cpl/driver/map_glc2lnd_mod.F90
D driver_cpl/driver/map_lnd2glc_mod.F90
D driver_cpl/driver/map_lnd2rof_irrig_mod.F90
D driver_cpl/driver/mrg_mod.F90
D driver_cpl/driver/prep_aoflux_mod.F90
D driver_cpl/driver/prep_atm_mod.F90
D driver_cpl/driver/prep_glc_mod.F90
D driver_cpl/driver/prep_ice_mod.F90
D driver_cpl/driver/prep_lnd_mod.F90
D driver_cpl/driver/prep_ocn_mod.F90
D driver_cpl/driver/prep_rof_mod.F90
D driver_cpl/driver/prep_wav_mod.F90
D driver_cpl/driver/seq_diag_mct.F90
D driver_cpl/driver/seq_domain_mct.F90
D driver_cpl/driver/seq_flux_mct.F90
D driver_cpl/driver/seq_frac_mct.F90
D driver_cpl/driver/seq_hist_mod.F90
D driver_cpl/driver/seq_io_mod.F90
D driver_cpl/driver/seq_map_mod.F90
D driver_cpl/driver/seq_map_type_mod.F90
D driver_cpl/driver/seq_rest_mod.F90
D driver_cpl/driver/t_driver_timers_mod.F90
D driver_cpl/driver/vertical_gradient_calculator_2nd_order.F90
D driver_cpl/driver/vertical_gradient_calculator_base.F90
D driver_cpl/driver/vertical_gradient_calculator_factory.F90
D driver_cpl/shr/CMakeLists.txt
D driver_cpl/shr/glc_elevclass_mod.F90
D driver_cpl/shr/seq_cdata_mod.F90
D driver_cpl/shr/seq_comm_mct.F90
D driver_cpl/shr/seq_drydep_mod.F90
D driver_cpl/shr/seq_flds_mod.F90
D driver_cpl/shr/seq_infodata_mod.F90
D driver_cpl/shr/seq_io_read_mod.F90
D driver_cpl/shr/seq_timemgr_mod.F90
D driver_cpl/shr/shr_carma_mod.F90
D driver_cpl/shr/shr_expr_parser_mod.F90
D driver_cpl/shr/shr_fire_emis_mod.F90
D driver_cpl/shr/shr_megan_mod.F90
D driver_cpl/unit_test/CMakeLists.txt
D driver_cpl/unit_test/avect_wrapper_test/CMakeLists.txt
D driver_cpl/unit_test/avect_wrapper_test/test_avect_wrapper.pf
D driver_cpl/unit_test/glc_elevclass_test/CMakeLists.txt
D driver_cpl/unit_test/glc_elevclass_test/test_glc_elevclass.pf
D driver_cpl/unit_test/map_glc2lnd_test/CMakeLists.txt
D driver_cpl/unit_test/map_glc2lnd_test/test_map_glc2lnd.pf
D driver_cpl/unit_test/map_lnd2glc_test/CMakeLists.txt
D driver_cpl/unit_test/map_lnd2glc_test/test_map_lnd2glc.pf
D driver_cpl/unit_test/map_lnd2rof_irrig_test/CMakeLists.txt
D driver_cpl/unit_test/map_lnd2rof_irrig_test/test_map_lnd2rof_irrig.pf
D driver_cpl/unit_test/seq_map_test/CMakeLists.txt
D driver_cpl/unit_test/seq_map_test/test_seq_map.pf
D driver_cpl/unit_test/stubs/CMakeLists.txt
D driver_cpl/unit_test/stubs/vertical_gradient_calculator_constant.F90
D driver_cpl/unit_test/utils/CMakeLists.txt
D driver_cpl/unit_test/utils/avect_wrapper_mod.F90
D driver_cpl/unit_test/utils/create_mapper_mod.F90
D driver_cpl/unit_test/utils/mct_wrapper_mod.F90
D driver_cpl/unit_test/utils/simple_map_mod.F90
D driver_cpl/unit_test/vertical_gradient_calculator_test/CMakeLists.txt
D driver_cpl/unit_test/vertical_gradient_calculator_test/README
D driver_cpl/unit_test/vertical_gradient_calculator_test/gradient_example.txt
D driver_cpl/unit_test/vertical_gradient_calculator_test/plot_gradient
D driver_cpl/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_2nd_order.pf
D driver_cpl/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_factory.pf
D externals/CMake/.gitignore
D externals/CMake/CESM_utils.cmake
D externals/CMake/CIME_utils.cmake
D externals/CMake/ChangeLog
D externals/CMake/Compilers.cmake
D externals/CMake/FindpFUnit.cmake
D externals/CMake/LICENSE
D externals/CMake/README.md
D externals/CMake/Sourcelist_utils.cmake
D externals/CMake/TryCSizeOf.f90
D externals/CMake/TryMPIIO.f90
D externals/CMake/TryMPIMod.f90
D externals/CMake/TryMPISERIAL.f90
D externals/CMake/TryPnetcdf_inc.f90
D externals/CMake/TryPnetcdf_mod.f90
D externals/CMake/genf90_utils.cmake
D externals/CMake/mpiexec.cmake
D externals/CMake/pFUnit_utils.cmake
D externals/genf90/ChangeLog
D externals/genf90/genf90.pl
D externals/mct/.gitignore
D externals/mct/COPYRIGHT
D externals/mct/Makefile
D externals/mct/Makefile.conf.in
D externals/mct/README
D externals/mct/aclocal.m4
D externals/mct/benchmarks/.gitignore
D externals/mct/benchmarks/Makefile
D externals/mct/benchmarks/RouterTestDis.F90
D externals/mct/benchmarks/RouterTestOvr.F90
D externals/mct/benchmarks/T42.8pC
D externals/mct/benchmarks/T42.8pR
D externals/mct/benchmarks/gx1.8pC
D externals/mct/benchmarks/gx1.8pR
D externals/mct/benchmarks/importBench.F90
D externals/mct/config.h.in
D externals/mct/configure
D externals/mct/configure.ac
D externals/mct/doc/.gitignore
D externals/mct/doc/Makefile
D externals/mct/doc/README
D externals/mct/doc/coupler.bib
D externals/mct/doc/mct_APIs.tex
D externals/mct/doc/texsrc/.gitignore
D externals/mct/doc/texsrc/Makefile
D externals/mct/doc/texsrc/SRCS_tex.mk
D externals/mct/examples/Makefile
D externals/mct/examples/README
D externals/mct/examples/climate_concur1/.gitignore
D externals/mct/examples/climate_concur1/Makefile
D externals/mct/examples/climate_concur1/README
D externals/mct/examples/climate_concur1/coupler.F90
D externals/mct/examples/climate_concur1/master.F90
D externals/mct/examples/climate_concur1/model.F90
D externals/mct/examples/climate_sequen1/.gitignore
D externals/mct/examples/climate_sequen1/Makefile
D externals/mct/examples/climate_sequen1/README
D externals/mct/examples/climate_sequen1/TS1.dat
D externals/mct/examples/climate_sequen1/coupler.F90
D externals/mct/examples/climate_sequen1/dst.rc
D externals/mct/examples/climate_sequen1/dstmodel.F90
D externals/mct/examples/climate_sequen1/master.F90
D externals/mct/examples/climate_sequen1/mutils.F90
D externals/mct/examples/climate_sequen1/src.rc
D externals/mct/examples/climate_sequen1/srcmodel.F90
D externals/mct/examples/simple/.gitignore
D externals/mct/examples/simple/Makefile
D externals/mct/examples/simple/README
D externals/mct/examples/simple/script.babyblue
D externals/mct/examples/simple/twocmp.con.F90
D externals/mct/examples/simple/twocmp.seq.F90
D externals/mct/examples/simple/twocmp.seqNB.F90
D externals/mct/examples/simple/twocmp.seqUnvn.F90
D externals/mct/install-sh
D externals/mct/m4/README
D externals/mct/m4/acx_mpi.m4
D externals/mct/m4/ax_fc_version.m4
D externals/mct/m4/fortran.m4
D externals/mct/mct/Makefile
D externals/mct/mct/README
D externals/mct/mct/m_Accumulator.F90
D externals/mct/mct/m_AccumulatorComms.F90
D externals/mct/mct/m_AttrVect.F90
D externals/mct/mct/m_AttrVectComms.F90
D externals/mct/mct/m_AttrVectReduce.F90
D externals/mct/mct/m_ConvertMaps.F90
D externals/mct/mct/m_ExchangeMaps.F90
D externals/mct/mct/m_GeneralGrid.F90
D externals/mct/mct/m_GeneralGridComms.F90
D externals/mct/mct/m_GlobalMap.F90
D externals/mct/mct/m_GlobalSegMap.F90
D externals/mct/mct/m_GlobalSegMapComms.F90
D externals/mct/mct/m_GlobalToLocal.F90
D externals/mct/mct/m_MCTWorld.F90
D externals/mct/mct/m_MatAttrVectMul.F90
D externals/mct/mct/m_Merge.F90
D externals/mct/mct/m_Navigator.F90
D externals/mct/mct/m_Rearranger.F90
D externals/mct/mct/m_Router.F90
D externals/mct/mct/m_SparseMatrix.F90
D externals/mct/mct/m_SparseMatrixComms.F90
D externals/mct/mct/m_SparseMatrixDecomp.F90
D externals/mct/mct/m_SparseMatrixPlus.F90
D externals/mct/mct/m_SparseMatrixToMaps.F90
D externals/mct/mct/m_SpatialIntegral.F90
D externals/mct/mct/m_SpatialIntegralV.F90
D externals/mct/mct/m_Transfer.F90
D externals/mct/mkinstalldirs
D externals/mct/mpeu/Makefile
D externals/mct/mpeu/README
D externals/mct/mpeu/assertmpeu.H
D externals/mct/mpeu/get_zeits.c
D externals/mct/mpeu/m_FcComms.F90
D externals/mct/mpeu/m_FileResolv.F90
D externals/mct/mpeu/m_Filename.F90
D externals/mct/mpeu/m_IndexBin_char.F90
D externals/mct/mpeu/m_IndexBin_integer.F90
D externals/mct/mpeu/m_IndexBin_logical.F90
D externals/mct/mpeu/m_List.F90
D externals/mct/mpeu/m_MergeSorts.F90
D externals/mct/mpeu/m_Permuter.F90
D externals/mct/mpeu/m_SortingTools.F90
D externals/mct/mpeu/m_StrTemplate.F90
D externals/mct/mpeu/m_String.F90
D externals/mct/mpeu/m_StringLinkedList.F90
D externals/mct/mpeu/m_TraceBack.F90
D externals/mct/mpeu/m_chars.F90
D externals/mct/mpeu/m_die.F90
D externals/mct/mpeu/m_dropdead.F90
D externals/mct/mpeu/m_flow.F90
D externals/mct/mpeu/m_inpak90.F90
D externals/mct/mpeu/m_ioutil.F90
D externals/mct/mpeu/m_mall.F90
D externals/mct/mpeu/m_mpif.F90
D externals/mct/mpeu/m_mpif90.F90
D externals/mct/mpeu/m_mpout.F90
D externals/mct/mpeu/m_rankMerge.F90
D externals/mct/mpeu/m_realkinds.F90
D externals/mct/mpeu/m_stdio.F90
D externals/mct/mpeu/m_zeit.F90
D externals/mct/mpi-serial/.gitignore
D externals/mct/mpi-serial/Makefile
D externals/mct/mpi-serial/Makefile.conf.in
D externals/mct/mpi-serial/NOTES
D externals/mct/mpi-serial/README
D externals/mct/mpi-serial/aclocal.m4
D externals/mct/mpi-serial/cart.c
D externals/mct/mpi-serial/collective.c
D externals/mct/mpi-serial/comm.c
D externals/mct/mpi-serial/config.h.in
D externals/mct/mpi-serial/configure
D externals/mct/mpi-serial/configure.in
D externals/mct/mpi-serial/copy.c
D externals/mct/mpi-serial/fort.F90
D externals/mct/mpi-serial/getcount.c
D externals/mct/mpi-serial/group.c
D externals/mct/mpi-serial/handles.c
D externals/mct/mpi-serial/info.c
D externals/mct/mpi-serial/list.c
D externals/mct/mpi-serial/list.h
D externals/mct/mpi-serial/listP.h
D externals/mct/mpi-serial/listops.h
D externals/mct/mpi-serial/m4/README
D externals/mct/mpi-serial/m4/ax_fc_version.m4
D externals/mct/mpi-serial/mpi.c
D externals/mct/mpi-serial/mpi.h
D externals/mct/mpi-serial/mpiP.h
D externals/mct/mpi-serial/mpif.F90
D externals/mct/mpi-serial/mpif.h
D externals/mct/mpi-serial/op.c
D externals/mct/mpi-serial/pack.c
D externals/mct/mpi-serial/probe.c
D externals/mct/mpi-serial/protify.awk
D externals/mct/mpi-serial/recv.c
D externals/mct/mpi-serial/req.c
D externals/mct/mpi-serial/send.c
D externals/mct/mpi-serial/tests/.gitignore
D externals/mct/mpi-serial/tests/Makefile
D externals/mct/mpi-serial/tests/ctest.c
D externals/mct/mpi-serial/tests/ctest_old.c
D externals/mct/mpi-serial/tests/ftest.F90
D externals/mct/mpi-serial/tests/ftest_internal.F90
D externals/mct/mpi-serial/tests/ftest_old.F90
D externals/mct/mpi-serial/time.c
D externals/mct/mpi-serial/type.c
D externals/mct/mpi-serial/type.h
D externals/mct/mpi-serial/type_const.c
D externals/mct/protex/protex
D externals/mct/testsystem/Makefile
D externals/mct/testsystem/testall/.gitignore
D externals/mct/testsystem/testall/Makefile
D externals/mct/testsystem/testall/ReadSparseMatrixAsc.F90
D externals/mct/testsystem/testall/UNTESTED
D externals/mct/testsystem/testall/ccm.F90
D externals/mct/testsystem/testall/convertPOPT.F90
D externals/mct/testsystem/testall/convertgauss.F90
D externals/mct/testsystem/testall/cpl.F90
D externals/mct/testsystem/testall/job.ut-all.jaguar
D externals/mct/testsystem/testall/m_ACTEST.F90
D externals/mct/testsystem/testall/m_AVTEST.F90
D externals/mct/testsystem/testall/m_GGRIDTEST.F90
D externals/mct/testsystem/testall/m_GMAPTEST.F90
D externals/mct/testsystem/testall/m_GSMAPTEST.F90
D externals/mct/testsystem/testall/m_MCTWORLDTEST.F90
D externals/mct/testsystem/testall/m_ROUTERTEST.F90
D externals/mct/testsystem/testall/m_SMATTEST.F90
D externals/mct/testsystem/testall/master.F90
D externals/mct/testsystem/testall/mph.F90
D externals/mct/testsystem/testall/pop.F90
D externals/mct/testsystem/testall/processors_map.in
D externals/mct/testsystem/testall/script.jag
D externals/mct/testsystem/testall/ut_SparseMatrix.rc
D externals/mct/testunit/.gitignore
D externals/mct/testunit/AttrVect_Test.F90
D externals/mct/testunit/Makefile
D externals/mct/testunit/master.F90
D externals/pio1/CMakeLists.txt
D externals/pio1/ChangeLog
D externals/pio1/ChangeLog_template
D externals/pio1/Doxyfile
D externals/pio1/DoxygenLayout.xml
D externals/pio1/SVN_EXTERNAL_DIRECTORIES
D externals/pio1/customdoxygen.css
D externals/pio1/doc/CAMexample.txt
D externals/pio1/doc/Decomp.txt
D externals/pio1/doc/DoxygenLayout.xml
D externals/pio1/doc/Error.txt
D externals/pio1/doc/Examples.txt
D externals/pio1/doc/GettingStarted.txt
D externals/pio1/doc/Installing.txt
D externals/pio1/doc/api.txt
D externals/pio1/doc/base.txt
D externals/pio1/doc/example/errorhandle
D externals/pio1/doc/example/simple-bc
D externals/pio1/doc/example/simple-bc-rearr
D externals/pio1/doc/example/simple-bc-rearr-pe1
D externals/pio1/doc/example/simple-bc-rearr-pe2
D externals/pio1/doc/example/simple-dof
D externals/pio1/doc/example/simple-dof-rearr
D externals/pio1/doc/faq.txt
D externals/pio1/doc/footer.html
D externals/pio1/doc/header.html
D externals/pio1/doc/images/baseimage.graffle
D externals/pio1/doc/images/block-cyclic-rearr.eps
D externals/pio1/doc/images/block-cyclic-rearr.graffle
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D externals/pio1/doc/testpio_example.txt
D externals/pio1/doxygen.sty
D externals/pio1/pio/CMakeLists.txt
D externals/pio1/pio/C_interface_mod.F90
D externals/pio1/pio/Makefile.conf.in
D externals/pio1/pio/README.config
D externals/pio1/pio/alloc_mod.F90.in
D externals/pio1/pio/box_rearrange.F90.in
D externals/pio1/pio/calcdecomp.F90
D externals/pio1/pio/calcdisplace_mod.F90
D externals/pio1/pio/config.h.in
D externals/pio1/pio/dtypes.h
D externals/pio1/pio/fdepends.awk
D externals/pio1/pio/iompi_mod.F90.in
D externals/pio1/pio/ionf_mod.F90
D externals/pio1/pio/nf_mod.F90
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D externals/pio1/pio/pio_mpi_utils.F90
D externals/pio1/pio/pio_msg_callbacks.F90
D externals/pio1/pio/pio_msg_getput_callbacks.F90.in
D externals/pio1/pio/pio_msg_mod.F90
D externals/pio1/pio/pio_nf_utils.F90
D externals/pio1/pio/pio_spmd_utils.F90.in
D externals/pio1/pio/pio_support.F90
D externals/pio1/pio/pio_types.F90
D externals/pio1/pio/pio_utils.F90
D externals/pio1/pio/piodarray.F90.in
D externals/pio1/pio/piolib_mod.F90
D externals/pio1/pio/pionfatt_mod.F90.in
D externals/pio1/pio/pionfget_mod.F90.in
D externals/pio1/pio/pionfput_mod.F90.in
D externals/pio1/pio/pionfread_mod.F90.in
D externals/pio1/pio/pionfwrite_mod.F90.in
D externals/pio1/pio/piovdc.F90
D externals/pio1/pio/rearr_options.h
D externals/pio1/pio/rearrange.F90.in
D externals/pio1/pio/topology.c
D externals/pio1/scripts/Utils.pm
D externals/pio1/scripts/config.pl
D externals/pio1/scripts/testpio_yellowstone.pl
D externals/pio1/tests/testpio/CAM05.csh
D externals/pio1/tests/testpio/CMakeLists.txt
D externals/pio1/tests/testpio/MPASA30km.csh
D externals/pio1/tests/testpio/MPASA60km.csh
D externals/pio1/tests/testpio/POPB.csh
D externals/pio1/tests/testpio/POPC.csh
D externals/pio1/tests/testpio/POPD.csh
D externals/pio1/tests/testpio/POPDv0.csh
D externals/pio1/tests/testpio/POPDv1.csh
D externals/pio1/tests/testpio/POPDv2.csh
D externals/pio1/tests/testpio/POPDv3.csh
D externals/pio1/tests/testpio/POPDv4.csh
D externals/pio1/tests/testpio/POPDv5.csh
D externals/pio1/tests/testpio/README.testpio
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D tests/unit/test_names.c
M tools/configure
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M tools/unit_testing/run_tests.py
D utils/data_assimilation/da_no_data_mod.sh
M utils/perl5lib/compilers_translation_tool.pl
D utils/python/CIME/BuildTools/__init__.py
D utils/python/CIME/BuildTools/cmakemacroswriter.py
D utils/python/CIME/BuildTools/configure.py
D utils/python/CIME/BuildTools/macroconditiontree.py
D utils/python/CIME/BuildTools/macrowriterbase.py
D utils/python/CIME/BuildTools/makemacroswriter.py
D utils/python/CIME/BuildTools/possiblevalues.py
D utils/python/CIME/BuildTools/valuesetting.py
D utils/python/CIME/SystemTests/README
D utils/python/CIME/SystemTests/__init__.py
D utils/python/CIME/SystemTests/dae.py
D utils/python/CIME/SystemTests/eri.py
D utils/python/CIME/SystemTests/erio.py
D utils/python/CIME/SystemTests/erp.py
D utils/python/CIME/SystemTests/err.py
D utils/python/CIME/SystemTests/ers.py
D utils/python/CIME/SystemTests/ert.py
D utils/python/CIME/SystemTests/homme.py
D utils/python/CIME/SystemTests/icp.py
D utils/python/CIME/SystemTests/lii.py
D utils/python/CIME/SystemTests/nck.py
D utils/python/CIME/SystemTests/ncr.py
D utils/python/CIME/SystemTests/pea.py
D utils/python/CIME/SystemTests/pem.py
D utils/python/CIME/SystemTests/pet.py
D utils/python/CIME/SystemTests/pfs.py
D utils/python/CIME/SystemTests/pre.py
D utils/python/CIME/SystemTests/rep.py
D utils/python/CIME/SystemTests/seq.py
D utils/python/CIME/SystemTests/sms.py
D utils/python/CIME/SystemTests/ssp.py
D utils/python/CIME/SystemTests/system_tests_common.py
D utils/python/CIME/SystemTests/system_tests_compare_two.py
D utils/python/CIME/SystemTests/test_utils/__init__.py
D utils/python/CIME/SystemTests/test_utils/user_nl_utils.py
D utils/python/CIME/XML/__init__.py
D utils/python/CIME/XML/archive.py
D utils/python/CIME/XML/batch.py
D utils/python/CIME/XML/compilerblock.py
D utils/python/CIME/XML/compilers.py
D utils/python/CIME/XML/component.py
D utils/python/CIME/XML/compsets.py
D utils/python/CIME/XML/entry_id.py
D utils/python/CIME/XML/env_archive.py
D utils/python/CIME/XML/env_base.py
D utils/python/CIME/XML/env_batch.py
D utils/python/CIME/XML/env_build.py
D utils/python/CIME/XML/env_case.py
D utils/python/CIME/XML/env_mach_pes.py
D utils/python/CIME/XML/env_mach_specific.py
D utils/python/CIME/XML/env_run.py
D utils/python/CIME/XML/env_test.py
D utils/python/CIME/XML/files.py
D utils/python/CIME/XML/generic_xml.py
D utils/python/CIME/XML/grids.py
D utils/python/CIME/XML/headers.py
D utils/python/CIME/XML/lt_archive.py
D utils/python/CIME/XML/machines.py
D utils/python/CIME/XML/namelist_definition.py
D utils/python/CIME/XML/pes.py
D utils/python/CIME/XML/pio.py
D utils/python/CIME/XML/standard_module_setup.py
D utils/python/CIME/XML/testlist.py
D utils/python/CIME/XML/tests.py
D utils/python/CIME/XML/testspec.py
D utils/python/CIME/__init__.py
D utils/python/CIME/bless_test_results.py
D utils/python/CIME/build.py
D utils/python/CIME/buildlib.py
D utils/python/CIME/buildnml.py
D utils/python/CIME/case.py
D utils/python/CIME/case_cmpgen_namelists.py
D utils/python/CIME/case_lt_archive.py
D utils/python/CIME/case_run.py
D utils/python/CIME/case_setup.py
D utils/python/CIME/case_st_archive.py
D utils/python/CIME/case_submit.py
D utils/python/CIME/case_test.py
D utils/python/CIME/check_input_data.py
D utils/python/CIME/check_lockedfiles.py
D utils/python/CIME/code_checker.py
D utils/python/CIME/compare_namelists.py
D utils/python/CIME/compare_test_results.py
D utils/python/CIME/get_timing.py
D utils/python/CIME/hist_utils.py
D utils/python/CIME/namelist.py
D utils/python/CIME/nmlgen.py
D utils/python/CIME/preview_namelists.py
D utils/python/CIME/provenance.py
D utils/python/CIME/simple_compare.py
D utils/python/CIME/test_scheduler.py
D utils/python/CIME/test_status.py
D utils/python/CIME/test_utils.py
D utils/python/CIME/tests/README
D utils/python/CIME/tests/SystemTests/__init__.py
D utils/python/CIME/tests/SystemTests/test_system_tests_compare_two.py
D utils/python/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
D utils/python/CIME/tests/SystemTests/test_utils/__init__.py
D utils/python/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
D utils/python/CIME/tests/__init__.py
D utils/python/CIME/tests/case_fake.py
D utils/python/CIME/tests/test_case_fake.py
D utils/python/CIME/user_mod_support.py
D utils/python/CIME/utils.py
D utils/python/CIME/wait_for_tests.py
D utils/python/cs.status.template
D utils/python/cs.submit.template
D utils/python/jenkins_generic_job.py
D utils/python/tests/CMakeLists.txt
D utils/python/tests/CTestConfig.cmake
D utils/python/tests/cpl.hi1.nc.test
D utils/python/tests/cpl.hi2.nc.test
D utils/python/tests/cpl.log.failmemleak.gz
D utils/python/tests/cpl.log.passmemleak.gz
D utils/python/tests/list_tests
D utils/python/tests/scripts_regression_tests.py
D utils/python/tests/user_mods_test1/include_user_mods
D utils/python/tests/user_mods_test1/user_nl_comp
D utils/python/tests/user_mods_test1/user_nl_cpl
D utils/python/tests/user_mods_test2/SourceMods/src.drv/somefile.F90
D utils/python/tests/user_mods_test2/user_nl_cpl
D utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-23-2017
Tag: cime5.2.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests on some for PRs #1159,#1172
B1850 test for PR#1159
Dependencies: For allactive configurations, https://github.com/CESM-Development/cime_config
is needed.
Brief Summary:
-Move cesm/allactive out of the cime tag.
-Pop namelist changes,
-Make sure pio1 finds netcdf4
-add --mpilib option to create_test
-Add S-case test to cime_developers
User interface changes: adds --mpilib optional argument to create_test
PR summary: git log --oneline --first-parent [previous_tag]..master
fd200f6 Merge pull request #1181 from ESMCI/agsalin/add_S_case_test
d33e6a2 Merge pull request #1180 from jedwards4b/create_test_mpilib_option
d210e0b Merge pull request #1159 from bertinia/master
ad5ff79 Merge pull request #1172 from ESMCI/mvertens/pop_python_namelist
4ab605f Merge pull request #1177 from jedwards4b/pio1_bld_fixes
Modified files: git diff --name-status [previous_tag]
D cime_config/cesm/allactive/config_compsets.xml
D cime_config/cesm/allactive/config_pes.xml
D cime_config/cesm/allactive/testlist_allactive.xml
D cime_config/cesm/allactive/testmods_dirs/allactive/cesm2dev01/include_user_mods
D cime_config/cesm/allactive/testmods_dirs/allactive/cesm2dev01io/include_user_mods
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/README
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/shell_commands
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/README
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/include_user_mods
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/shell_commands
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/trilinos/user_nl_cism
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_cam
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_cice
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_clm
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_mosart
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_pop
D cime_config/cesm/allactive/testmods_dirs/allactive/default/user_nl_rtm
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/include_user_mods
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cam
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cice
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_cism
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_clm
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_mosart
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_pop
D cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_rtm
D cime_config/cesm/allactive/usermods_dirs/b1850/shell_commands
D cime_config/cesm/allactive/usermods_dirs/b1850/user_nl_clm
D cime_config/cesm/allactive/usermods_dirs/b1850/user_nl_cpl
D cime_config/cesm/allactive/usermods_dirs/b1850_cism/include_user_mods
D cime_config/cesm/allactive/usermods_dirs/b1850_cism/user_nl_cism
M cime_config/cesm/machines/Makefile
M externals/pio1/pio/CMakeLists.txt
M scripts/create_newcase
M scripts/create_test
M utils/python/CIME/build.py
M utils/python/CIME/namelist.py
M utils/python/CIME/test_scheduler.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Bill Sacks
Date: 02-21-2017
Tag: cime5.2.0-alpha.25
Answer Changes: Likely answer changes on yellowstone relative to
alpha.24, but not relative to alpha.23
Tests: One CLM test that failed in alpha.24
Dependencies: none
Brief Summary: Back out the compiler update on yellowstone
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
bac0ce7 Merge pull request #1174 from jedwards4b/compiler_backout
Modified files: git diff --name-status [previous_tag]
M cime_config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Bill Sacks
Date: 02-17-2017
Tag: cime5.2.0-alpha.24
Answer Changes: None documented in merge log messages for 'Test status'
Tests: scripts_regression_tests.py run on some changes, but not this tag
Dependencies:
Brief Summary: Major changes include:
- Bring in ACME changes up to 5.1
- Fix Fortran unit tests
User interface changes: The following changes were documented:
- create_newcase --mach is now --machine to match create_test
- Removes PRE test from cime_developer
- Many changes in PR #1123 ("Merge the maint-cime5.1 branch along with ACME's
changes to 5.1"), most (all?) of which just affect ACME
- -p flag to xmlquery
- -a option to case.submit
PR summary: git log --oneline --first-parent [previous_tag]..master
980a6b8 Merge pull request #1167 from fischer-ncar/drip_annual_changes_test_fix
e8929e2 Merge pull request #1165 from ESMCI/jayeshkrishna/cond_incl_make_undefine
9554cce Merge pull request #1160 from jedwards4b/get_timing_correction
642cc32 Merge pull request #1164 from billsacks/unit_tests_local
938e9b0 Merge pull request #1157 from billsacks/unit_test_parallel
3929369 Merge pull request #1149 from jedwards4b/correct_path_query_for_testlistxml
9b1630f Merge pull request #1152 from jedwards4b/pio_bld_fix
db95da1 Merge pull request #1151 from ESMCI/agsalin/gitignore
c80c65c Merge pull request #1145 from billsacks/unit_test_cleanup
e8d8c67 fix pylint issue
7ef40c0 Merge pull request #1140 from jedwards4b/cleanbld_refactor
bd3fc66 Merge pull request #1135 from jedwards4b/unit_test_refactor
534aade Merge branch 'jgfouca/allow_arbitrary_batch_args' (PR #1137)
d0a1616 Merge pull request #1136 from ESMCI/jgfouca/handle_batch_errors_better
26cd982 Merge pull request #1131 from bertinia/master
26dd1e2 Merge pull request #1126 from ESMCI/jgfouca/bless_test_update
98c0ff1 Merge pull request #1127 from ESMCI/jgfouca/namelist_allow_star
a51fb8c Merge pull request #1128 from ESMCI/jgfouca/xmlquery_partial_match
77cf83e Merge branch 'worleyph/timing/non-null-terminated_string_support_fix' into master (PR #895)
21ea438 Merge pull request #1122 from gold2718/DAEfix
7248aef Merge branch 'jgfouca/acme5.1_to_esmci_try2' (PR #1123)
69627c8 Hotfix for minor whitespace issue in exception text
2456b56 Merge pull request #1110 from ESMCI/jgfouca/fixes_to_recent_new_tests
18734f3 Merge pull request #1104 from jedwards4b/tested_msg
11e30d6 Merge pull request #1109 from gold2718/TimeMgrFix
e367fb4 Merge pull request #1098 from ESMCI/mfdeakin-sandia/map_field_build
ff4f207 Merge pull request #1095 from gold2718/DAdesp
a93184d Merge pull request #1097 from jedwards4b/tie_timers_to_xml
618f515 Merge pull request #1092 from mgduda/esmf_timemgr/i8_interval_division
654504c Merge pull request #1094 from ESMCI/jgfouca/err_resub_fix
f56a446 Merge pull request #1090 from jedwards4b/lt_archive_issues
ccd1e96 Merge pull request #1082 from jedwards4b/addback_mask_grid
81f08e1 Merge pull request #1081 from jedwards4b/fix_no_nesting_fail
1d083cc fix pylint issue
9e2764c Merge pull request #1080 from jedwards4b/config_compilers_conformity
ccb7c22 Revert "Change over acme env usage to correct syntax"
Modified files: git diff --name-status [previous_tag]
M .gitignore
M CMakeLists.txt
M README.unit_testing
M cime_config/acme/allactive/config_compsets.xml
M cime_config/acme/allactive/config_compsets.xml.cime2
M cime_config/acme/allactive/config_pes.xml
M cime_config/acme/allactive/config_pes.xml.cime2
M cime_config/acme/allactive/config_pesall.xml
D cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/user_nl_cam
D cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/user_nl_clm
M cime_config/acme/config_files.xml
M cime_config/acme/config_grids.xml
M cime_config/acme/machines/Depends.cetus
M cime_config/acme/machines/Depends.intel
M cime_config/acme/machines/Depends.intel14
M cime_config/acme/machines/Depends.intelmic
M cime_config/acme/machines/Depends.intelmic14
M cime_config/acme/machines/Depends.mira
D cime_config/acme/machines/Depends.titan.pgi_acc
A cime_config/acme/machines/Depends.titan.pgiacc
D cime_config/acme/machines/Depends.titan.pgicuda
M cime_config/acme/machines/Makefile
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/acme/machines/config_pio.xml
D cime_config/acme/machines/env_mach_specific.blues
D cime_config/acme/machines/env_mach_specific.cascade
D cime_config/acme/machines/env_mach_specific.cetus
D cime_config/acme/machines/env_mach_specific.constance
D cime_config/acme/machines/env_mach_specific.corip1
D cime_config/acme/machines/env_mach_specific.edison
D cime_config/acme/machines/env_mach_specific.eos
D cime_config/acme/machines/env_mach_specific.juqueen
D cime_config/acme/machines/env_mach_specific.lawrencium-lr2
D cime_config/acme/machines/env_mach_specific.linux-generic
D cime_config/acme/machines/env_mach_specific.mac
D cime_config/acme/machines/env_mach_specific.mira
D cime_config/acme/machines/env_mach_specific.mustang
D cime_config/acme/machines/env_mach_specific.oic2
D cime_config/acme/machines/env_mach_specific.oic5
D cime_config/acme/machines/env_mach_specific.sierra
D cime_config/acme/machines/env_mach_specific.sooty
D cime_config/acme/machines/env_mach_specific.stampede
D cime_config/acme/machines/env_mach_specific.titan
D cime_config/acme/machines/env_mach_specific.userdefined
D cime_config/acme/machines/env_mach_specific.wolf
M cime_config/acme/machines/syslog.cetus
A cime_config/acme/machines/syslog.cori-haswell
A cime_config/acme/machines/syslog.cori-knl
D cime_config/acme/machines/syslog.corip1
M cime_config/acme/machines/syslog.edison
M cime_config/acme/machines/syslog.mira
M cime_config/acme/machines/syslog.titan
A cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_cam
A cime_config/acme/testmods_dirs/allactive/cam/outfrq9s/user_nl_clm
M cime_config/buildlib.pio
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/allactive/testmods_dirs/allactive/defaultio/user_nl_clm
M cime_config/cesm/config_archive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_lt_archive.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/config_tests.xml
M cime_config/xml_schemas/config_machines.xsd
M components/data_comps/datm/cime_config/config_component.xml
A components/data_comps/desp/cime_config/buildlib
A components/data_comps/desp/cime_config/buildnml
A components/data_comps/desp/cime_config/config_component.xml
A components/data_comps/desp/cime_config/namelist_definition_desp.xml
A components/data_comps/desp/cime_config/user_nl_desp
A components/data_comps/desp/desp_comp_mod.F90
A components/data_comps/desp/esp_comp_mct.F90
A components/data_comps/desp/esp_utils.F90
M components/data_comps/dlnd/cime_config/config_component.xml
M components/data_comps/docn/cime_config/config_component.xml
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/config_component_acme.xml
M driver_cpl/cime_config/config_component_cesm.xml
M driver_cpl/cime_config/config_compsets.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M driver_cpl/cime_config/user_nl_cpl
M driver_cpl/driver/cesm_comp_mod.F90
M driver_cpl/driver/component_mod.F90
M driver_cpl/driver/seq_flux_mct.F90
M driver_cpl/driver/seq_io_mod.F90
M driver_cpl/shr/seq_infodata_mod.F90
M driver_cpl/shr/seq_timemgr_mod.F90
M driver_cpl/unit_test/vertical_gradient_calculator_test/plot_gradient
M externals/CMake/CESM_utils.cmake
A externals/CMake/CIME_utils.cmake
M externals/CMake/Compilers.cmake
D externals/CMake/FindNETCDF.cmake
D externals/CMake/FindNETCDF_C.cmake
D externals/CMake/FindNETCDF_Fortran.cmake
D externals/CMake/FindPnetcdf.cmake
M externals/CMake/FindpFUnit.cmake
D externals/CMake/LibFindMacros.cmake
M externals/CMake/README.md
M externals/pio1/pio/CMakeLists.txt
M externals/pio2/src/flib/piolib_mod.F90
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.submit
A scripts/Tools/cron_script
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M share/csm_share/shr/shr_flux_mod.F90
M share/csm_share/test/unit/dynamic_vector/CMakeLists.txt
M share/esmf_wrf_timemgr/ESMF_TimeIntervalMod.F90
M share/esmf_wrf_timemgr/ESMF_TimeMod.F90
M share/timing/ChangeLog
M share/timing/f_wrappers.c
M share/timing/gptl.c
M tools/configure
M tools/mapping/map_field/INSTALL
M tools/unit_testing/Examples/circle_area/tests/CMakeLists.txt
M tools/unit_testing/Examples/circle_area/tests/pFUnit/CMakeLists.txt
M tools/unit_testing/Examples/interpolate_1d/tests/CMakeLists.txt
M tools/unit_testing/Examples/interpolate_1d/tests/pFUnit/CMakeLists.txt
M tools/unit_testing/README
M tools/unit_testing/run_tests.py
M utils/data_assimilation/da_no_data_mod.sh
M utils/python/CIME/BuildTools/cmakemacroswriter.py
M utils/python/CIME/SystemTests/dae.py
M utils/python/CIME/SystemTests/err.py
M utils/python/CIME/SystemTests/homme.py
A utils/python/CIME/SystemTests/pre.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/compilerblock.py
M utils/python/CIME/XML/compilers.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/grids.py
M utils/python/CIME/XML/namelist_definition.py
M utils/python/CIME/XML/pes.py
M utils/python/CIME/bless_test_results.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_cmpgen_namelists.py
M utils/python/CIME/case_lt_archive.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_st_archive.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/check_input_data.py
M utils/python/CIME/code_checker.py
M utils/python/CIME/compare_namelists.py
M utils/python/CIME/compare_test_results.py
M utils/python/CIME/get_timing.py
M utils/python/CIME/provenance.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-30-2017
Tag: cime5.2.0-alpha.23
Answer Changes: None
Tests: cesm_tests, scripts_regression_tests.py
Dependencies:
Brief Summary: new tfreeze_option setting for cesm, some system test refactoring for
improved reuse of tests, single test no longer has external SHAREDLIBROOT setting
New pop default settings. Fix for clm test mapping file.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
feb28f3 Merge pull request #1076 from ESMCI/mvertens/fix_clm_usrdat
853da02 Merge pull request #1069 from jtruesdal/cime_plus_defs
38cc009 Merge pull request #1068 from jedwards4b/test_fixes
3d0965a Merge pull request #1062 from ESMCI/mvertens/tfreeze_option
19a104d Change over acme env usage to correct syntax
8d92fa0 Merge pull request #1048 from jedwards4b/depends_file_precidence
1e3008f Merge pull request #1054 from ESMCI/jgfouca/fix_eri_resub
5de3b4d Merge pull request #1055 from ESMCI/jgfouca/add_support_for_shell_in_XML
18479ce Merge pull request #1039 from ESMCI/jgfouca/lock_env_batch
3a84a6e Merge pull request #1046 from jedwards4b/some_log_issues
0489798 Fix Z_FullSystemTests on batch machines
742c8dc Merge pull request #1036 from ESMCI/jgfouca/fix_resubmission_of_some_testcases
49a7de6 fix pylint issue
289e39e Merge pull request #1034 from ESMCI/jgfouca/better_support_for_custom_input_files
869f904 Merge pull request #1025 from ESMCI/jgfouca/more_create_test_force_pecount_chgs
25de83b update ChangeLog
33d74c3 Merge pull request #1030 from jedwards4b/fix_drive_namelist_issue
Modified files: git diff --name-status
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_machines.xml
M cime_config/config_tests.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/config_component_acme.xml
M driver_cpl/cime_config/config_component_cesm.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M scripts/create_newcase
M utils/python/CIME/BuildTools/configure.py
M utils/python/CIME/SystemTests/eri.py
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/SystemTests/ers.py
M utils/python/CIME/SystemTests/ncr.py
M utils/python/CIME/SystemTests/seq.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/namelist_definition.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/check_input_data.py
M utils/python/CIME/check_lockedfiles.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-20-2017
Tag: cime5.2.0-alpha.22
Answer Changes: None
Tests: cesm tests, scripts_regression_tests
Dependencies:
Brief Summary: Fix issue in drv buildnml reading xml file.
User interface changes: Added error if buildnml file not found.
Modified files: git diff --name-status
M driver_cpl/cime_config/buildnml
M utils/python/CIME/XML/namelist_definition.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-19-2017
Tag: cime5.2.0-alpha.21
Answer Changes: None
Tests: scripts_regression_tests, cesm testing
Dependencies:
Brief Summary: Add science_support field for CESM. Add schema files
for config_batch, config_compsets xml files.
Add a config_machines_template.xml for documentation and porting.
Add model dependent config_component_$model.xml files for driver.
User interface changes: New flag in create_newcase --run-unsupported (cesm only)
New flag in create_clone --cime-output-root to support cloning across user.
Modified files: git diff --name-status
M cime_config/acme/config_files.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/machines/config_batch.xml
D cime_config/cesm/machines/config_batch.xsd
M cime_config/cesm/machines/config_compilers.xml
A cime_config/xml_schemas/config_batch.xsd
A cime_config/xml_schemas/config_compsets.xsd
A cime_config/xml_schemas/config_machines_template.xml
M cime_config/xml_schemas/config_pes.xsd
M cime_config/xml_schemas/entry_id_base.xsd
M cime_config/xml_schemas/testlist.xsd
M components/data_comps/datm/cime_config/buildnml
M components/data_comps/dice/cime_config/buildnml
M components/data_comps/dlnd/cime_config/buildnml
M components/data_comps/docn/cime_config/buildnml
M components/data_comps/drof/cime_config/buildnml
M components/data_comps/dwav/cime_config/buildnml
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
A driver_cpl/cime_config/config_component_acme.xml
A driver_cpl/cime_config/config_component_cesm.xml
M driver_cpl/cime_config/config_compsets.xml
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M tools/cprnc/compare_vars_mod.F90.in
M tools/cprnc/cprnc.F90
M tools/cprnc/filestruct.F90
M utils/python/CIME/XML/batch.py
M utils/python/CIME/XML/compilers.py
M utils/python/CIME/XML/compsets.py
M utils/python/CIME/XML/env_mach_pes.py
M utils/python/CIME/XML/files.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/grids.py
M utils/python/CIME/XML/machines.py
M utils/python/CIME/XML/namelist_definition.py
M utils/python/CIME/XML/pes.py
M utils/python/CIME/XML/testlist.py
M utils/python/CIME/case.py
M utils/python/CIME/nmlgen.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-15-2017
Tag: cime5.2.0-alpha.20
Answer Changes: None
Tests: scripts_regression_tests, cesm2_0_beta05 testing
Dependencies:
Brief Summary: Adds schema for config_pes and overrides section to that file
Adds support for new machine cheyenne
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/allactive/config_pes.xml
M cime_config/acme/config_files.xml
M cime_config/cesm/allactive/config_pes.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
A cime_config/xml_schemas/config_pes.xsd
M driver_cpl/cime_config/testdefs/testlist_drv.xml
M utils/python/CIME/XML/machines.py
M utils/python/CIME/XML/pes.py
M utils/python/CIME/case.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-12-2017
Tag: cime5.2.0-alpha.19
Answer Changes: None
Tests: scripts_regression_tests.py (on cheyenne)
Dependencies:
Brief Summary: Add support for new NCAR HPC system Cheyenne
User interface changes: none
Modified files: git diff --name-status
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-11-2017
Tag: cime5.2.0-alpha.18
Answer Changes: Climate Changing
Tests: scripts_regression_tests cesm2_0_alpha05d
Dependencies: (cesm requires pop version 20161219 or older
Brief Summary: Needed to back out changes that require a new pop version
Add schema definition for config_machines.xml
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/machines/config_machines.xml
M cime_config/acme/machines/config_pio.xml
M cime_config/buildlib.pio
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/config_machines.xml
A cime_config/xml_schemas/config_machines.xsd
M driver_cpl/bld/testdir/env_run.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M driver_cpl/shr/seq_infodata_mod.F90
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/machines.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-10-2017
Tag: cime5.2.0-alpha.17
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary: Fix issue with netcdf flags in Makefile, update nersc systems
add runtime env to provenance output
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/machines/Makefile
M cime_config/acme/machines/config_compilers.xml
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/xml_schemas/config_compilers_v2.xsd
M driver_cpl/bld/testdir/env_run.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M driver_cpl/shr/seq_infodata_mod.F90
M scripts/Tools/case_diff
M scripts/Tools/code_checker
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/machines.py
M utils/python/CIME/case.py
M utils/python/CIME/case_cmpgen_namelists.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_test.py
A utils/python/CIME/code_checker.py
M utils/python/CIME/compare_namelists.py
M utils/python/CIME/provenance.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-04-2017
Tag: cime5.2.0-alpha.15
Answer Changes: None
Tests: scripts_regression_tests, cesm development
Dependencies:
Brief Summary: fix issues with clm 1pt configurations, issues with pio namelist settings, data assimilation script arguments, sharedarea context manager,
User interface changes:
Modified files: git diff --name-status
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
M scripts/Tools/pelayout
M share/csm_share/shr/shr_pio_mod.F90
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/check_input_data.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/provenance.py
M utils/python/CIME/utils.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 01-03-2017
Tag: cime5.2.0-alpha.14
Answer Changes: None
Tests: scripts_regression_tests, cesm component testing
Dependencies:
Brief Summary: Changes several variables of the form XXX_COMP to variables of the
form XXX with values for each COMP. Remove clm40 from all active
compsets. Build gptl prior to MCT. Performance improvements in buildnml
User interface changes: Perl scripts in component models can no longer read these
COMP variables directely - they must now use xmlquery.
Modified files: git diff --name-status
M cime_config/acme/config_files.xml
M cime_config/acme/machines/Makefile
M cime_config/buildlib.mct
A cime_config/buildlib.mpi-serial
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_machines.xml
M cime_config/config_headers.xml
M cime_config/xml_schemas/entry_id_base.xsd
M cime_config/xml_schemas/entry_id_namelist.xsd
M components/data_comps/datm/cime_config/buildnml
M components/data_comps/datm/cime_config/namelist_definition_datm.xml
M components/data_comps/dice/cime_config/buildnml
M components/data_comps/dice/cime_config/namelist_definition_dice.xml
M components/data_comps/dlnd/cime_config/buildnml
M components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M components/data_comps/docn/cime_config/buildnml
M components/data_comps/docn/cime_config/namelist_definition_docn.xml
M components/data_comps/drof/cime_config/buildnml
M components/data_comps/drof/cime_config/namelist_definition_drof.xml
M components/data_comps/dwav/cime_config/buildnml
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M driver_cpl/cime_config/namelist_definition_modelio.xml
M scripts/Tools/case.build
M scripts/Tools/case.setup
A scripts/Tools/pelayout
M scripts/Tools/xmlchange
M scripts/Tools/xmlquery
M scripts/create_test
M scripts/manage_case
M scripts/manage_pes
M tools/mapping/map_field/README
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/SystemTests/nck.py
M utils/python/CIME/SystemTests/pea.py
M utils/python/CIME/SystemTests/seq.py
M utils/python/CIME/XML/component.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_archive.py
M utils/python/CIME/XML/env_base.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_build.py
M utils/python/CIME/XML/env_case.py
M utils/python/CIME/XML/env_mach_pes.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/env_run.py
M utils/python/CIME/XML/env_test.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/namelist_definition.py
M utils/python/CIME/XML/pes.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/get_timing.py
M utils/python/CIME/namelist.py
M utils/python/CIME/nmlgen.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 12-23-2016
Tag: cime5.2.0-alpha.13.bhist
Answer Changes: None
Tests: prealpha pgi tests on hobart, BHIST restart on yellowstone
Dependencies:
Brief Summary: Fix pnetcdf module on hobart for pgi. Update BHIST compset
names
User interface changes:
Modified files: git diff --name-status
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Jim Edwards
Date: 12-20-2016
Tag: cime5.2.0-alpha.13
Answer Changes: None
Tests: scripts_regression_tests, cesm2_0_alpha05b
Dependencies:
Brief Summary: fix nag and pgi compiler issues, refactor xmlquery tool,
fix issues with dlnd buildnml
User interface changes: xmlquery options were changed
Modified files:
M cime_config/cesm/machines/config_compilers.xml
M components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M driver_cpl/cime_config/config_component.xml
M scripts/Tools/xmlquery
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/buildnml.py
M utils/python/CIME/case.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/preview_namelists.py
M utils/python/tests/CMakeLists.txt
M utils/python/tests/list_tests
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 12-16-2016
Tag: cime5.2.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests, aux_clm40, aux_clm50
Dependencies:
Brief Summary: Fix for cori-haswell, critical namelist bug fix for datm
User interface changes:
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
M components/data_comps/datm/cime_config/namelist_definition_datm.xml
M utils/python/CIME/check_input_data.py
M utils/python/tests/scripts_regression_tests.py
Modified files: git diff --name-status
======================================================================
======================================================================
Originator: Jim Edwards
Date: 12-15-2016
Tag: cime5.2.0-alpha.11
Answer Changes: None
Tests: scripts_regression_tests + various cesm system tests
Dependencies:
Brief Summary: fix debug flag attribute, clone issues, buildnml direct in python
prevent a div by 0 in xmlchange, fix bless_test_results, move config_build to
config_compilers, fix starchive issue, remove doc directory, redo buildnml in python
datm updates, clm bld fix
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/config_files.xml
M cime_config/acme/machines/Makefile
D cime_config/acme/machines/config_build.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/buildlib.gptl
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/config_pes.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_batch.xml
D cime_config/cesm/machines/config_build.xml
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
D cime_config/xml_schemas/config_build.xsd
A cime_config/xml_schemas/config_compilers_v2.xsd
M components/data_comps/datm/cime_config/buildnml
M components/data_comps/datm/cime_config/config_component.xml
M components/data_comps/datm/cime_config/namelist_definition_datm.xml
M components/data_comps/dice/cime_config/buildnml
M components/data_comps/dice/cime_config/namelist_definition_dice.xml
M components/data_comps/dlnd/cime_config/buildnml
M components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M components/data_comps/docn/cime_config/buildnml
M components/data_comps/drof/cime_config/buildnml
M components/data_comps/drof/cime_config/config_component.xml
M components/data_comps/drof/cime_config/namelist_definition_drof.xml
M components/data_comps/dwav/cime_config/buildnml
M components/xcpl_comps/xatm/cime_config/buildnml
M components/xcpl_comps/xglc/cime_config/buildnml
M components/xcpl_comps/xice/cime_config/buildnml
M components/xcpl_comps/xlnd/cime_config/buildnml
M components/xcpl_comps/xocn/cime_config/buildnml
M components/xcpl_comps/xrof/cime_config/buildnml
M components/xcpl_comps/xwav/cime_config/buildnml
D doc/
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/namelist_definition_drv.xml
M driver_cpl/driver/cesm_comp_mod.F90
M driver_cpl/driver/seq_hist_mod.F90
M driver_cpl/driver/seq_io_mod.F90
M driver_cpl/shr/seq_flds_mod.F90
M driver_cpl/shr/seq_infodata_mod.F90
M externals/pio1/pio/pionfput_mod.F90.in
M scripts/Tools/code_checker
M scripts/Tools/compare_test_results
M scripts/Tools/preview_namelists
M scripts/query_testlists
M share/csm_share/shr/shr_file_mod.F90
M share/csm_share/shr/shr_strdata_mod.F90
M share/timing/ChangeLog
M share/timing/Makefile
M share/timing/perf_mod.F90
M tools/configure
M tools/mapping/gen_mapping_files/runoff_to_ocn/src/map_mod.F90
M tools/utils/find_circular_dependency.py
A utils/python/CIME/BuildTools/__init__.py
A utils/python/CIME/BuildTools/cmakemacroswriter.py
A utils/python/CIME/BuildTools/configure.py
A utils/python/CIME/BuildTools/macroconditiontree.py
A utils/python/CIME/BuildTools/macrowriterbase.py
A utils/python/CIME/BuildTools/makemacroswriter.py
A utils/python/CIME/BuildTools/possiblevalues.py
A utils/python/CIME/BuildTools/valuesetting.py
D utils/python/CIME/XML/build.py
A utils/python/CIME/XML/compilerblock.py
M utils/python/CIME/XML/compilers.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/grids.py
M utils/python/CIME/XML/machines.py
M utils/python/CIME/bless_test_results.py
M utils/python/CIME/build.py
M utils/python/CIME/buildnml.py
M utils/python/CIME/case.py
M utils/python/CIME/case_cmpgen_namelists.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_st_archive.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/compare_namelists.py
M utils/python/CIME/compare_test_results.py
M utils/python/CIME/get_timing.py
D utils/python/CIME/macros_writers.py
M utils/python/CIME/namelist.py
M utils/python/CIME/nmlgen.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/provenance.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/user_mod_support.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 11-28-2016
Tag: cime5.2.0-alpha.10
Answer Changes: Namelist compare changes expected
Tests: scripts_regression_tests + various cesm system tests
Dependencies:
Brief Summary: config_grids.xml refactor, add machines cori-haswell and cori-knl,
remove CCSM_BASELINE variable - replaced with BASELINE_ROOT
add error checks in xmlquery and xmlchange
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/allactive/config_pes.xml
M cime_config/acme/allactive/config_pesall.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_build.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_archive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
M cime_config/config_tests.xml
A cime_config/xml_schemas/config_grids_v2.xsd
M components/data_comps/dlnd/cime_config/config_component.xml
M driver_cpl/cime_config/config_component.xml
D scripts/Testing/Testcases/NOC_script
M scripts/Tools/bless_test_results
M scripts/Tools/compare_test_results
M scripts/Tools/xmlchange
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/Tools/xmlquery
A tools/utils/find_circular_dependency.py
M utils/python/CIME/SystemTests/erio.py
M utils/python/CIME/SystemTests/homme.py
D utils/python/CIME/SystemTests/noc.py
M utils/python/CIME/XML/component.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/grids.py
M utils/python/CIME/bless_test_results.py
M utils/python/CIME/case.py
M utils/python/CIME/case_st_archive.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/provenance.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 11-10-2016
Tag: cime5.2.0-alpha.9
Answer Changes: None
Tests: script_regression_tests
Dependencies:
Brief Summary:port to updated cori and new laramie systems, erio test and gmake fix.
User interface changes:
Modified files: git diff --name-status
A cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/shell_commands
D cime_config/acme/allactive/testmods_dirs/cam/outfrq9s/xmlchange_cmnds
A cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/shell_commands
D cime_config/acme/allactive/testmods_dirs/force_netcdf_pio/xmlchange_cmnds
M cime_config/acme/config_archive.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/buildlib.pio
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
A cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/shell_commands
D cime_config/cesm/allactive/testmods_dirs/allactive/cism/oneway/xmlchange_cmnds
M cime_config/cesm/config_archive.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/cesm/machines/config_pio.xml
M driver_cpl/cime_config/buildexe
M driver_cpl/cime_config/config_component.xml
M scripts/Tools/compare_test_results
M share/csm_share/shr/shr_strdata_mod.F90
M tools/cprnc/summarize_cprnc_diffs
M utils/python/CIME/SystemTests/erio.py
M utils/python/CIME/SystemTests/homme.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/build.py
M utils/python/CIME/buildlib.py
M utils/python/CIME/case.py
M utils/python/CIME/case_st_archive.py
M utils/python/CIME/case_test.py
M utils/python/CIME/compare_test_results.py
M utils/python/CIME/hist_utils.py
M utils/python/CIME/nmlgen.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/user_mod_support.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 11-02-2016
Tag: cime5.2.0-alpha.8
Answer Changes: None
Tests: scripts_regression_tests problem specific tests
Dependencies:
Brief Summary: improved build logging, --output-root option, fix issues with user_mods,
fix pea test, update laramie, testreporter fixes
User interface changes:
M cime_config/acme/machines/Makefile
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/acme/machines/userdefined_laptop_template/config_machines.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/cesm/machines/userdefined_laptop_template/config_machines.xml
M cime_config/config_tests.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/driver/cesm_comp_mod.F90
M scripts/Testing/testreporter.pl
M scripts/Tools/bless_test_results
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/cime_bisect
M scripts/Tools/compare_test_results
M scripts/Tools/jenkins_generic_job
M scripts/create_newcase
M scripts/create_test
M utils/perl5lib/Config/SetupTools.pm
A utils/python/CIME/SystemTests/erio.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_cmpgen_namelists.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/user_mod_support.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
Modified files: git diff --name-status
======================================================================
======================================================================
Originator: Jim Edwards
Date: 10-27-2016
Tag: cime5.2.0-alpha.7
Answer Changes: None
Tests: scripts_regression_tests problem specific tests
Dependencies:
Brief Summary: backout change to xmlchange command , fix ERP and ERI and DAE tests
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/machines/config_machines.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/config_tests.xml
M scripts/Tools/code_checker
M scripts/Tools/xmlchange
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/test_scheduler.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 10-26-2016
Tag: cime5.2.0-alpha.6
Answer Changes: None
Tests: scripts_regression_tests, problem specific tests
Dependencies:
Brief Summary: Fix for ERP tests, Fix for shr_scam_mod, indentation in cs.status
Fix for testmods recurrsion, pylint testing extended
User interface changes: none
Modified files: git diff --name-status
M cime_config/acme/machines/config_machines.xml
M cime_config/buildlib.pio
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/cime_bisect
M scripts/Tools/cimeteststatus
M scripts/Tools/code_checker
M scripts/Tools/compare_test_results
D scripts/Tools/config_pes_converter.py
M scripts/Tools/cs_status
D scripts/Tools/grid_xml_converter.py
M scripts/Tools/jenkins_generic_job
M scripts/Tools/standard_script_setup.py
M scripts/Tools/update_acme_tests
M scripts/Tools/xmlchange
A scripts/Tools/xmlconvertors/config_pes_converter.py
A scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/Tools/xmlquery
M share/csm_share/shr/shr_scam_mod.F90
M tools/cprnc/summarize_cprnc_diffs
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/build.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/test_status.py
M utils/python/CIME/user_mod_support.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 10-24-2016
Tag: cime5.2.0-alpha.5
Answer Changes: None
Tests: scripts_regression_tests, aux_clm45, others
Dependencies:
Brief Summary:
User interface changes: changes when preview_namelists is run, first in case.build and less frequently overall
Changes where sharedlib builds are installed to avoid conflicts in builds
Modified files: git diff --name-status
M cime_config/acme/machines/Makefile
D cime_config/acme/machines/buildlib.csm_share
D cime_config/acme/machines/buildlib.gptl
D cime_config/acme/machines/buildlib.mct
D cime_config/acme/machines/buildlib.pio
A cime_config/buildlib.csm_share
A cime_config/buildlib.gptl
A cime_config/buildlib.mct
A cime_config/buildlib.pio
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/machines/Makefile
D cime_config/cesm/machines/buildlib.csm_share
D cime_config/cesm/machines/buildlib.gptl
D cime_config/cesm/machines/buildlib.mct
D cime_config/cesm/machines/buildlib.pio
M cime_config/cesm/machines/config_machines.xml
M components/data_comps/datm/cime_config/config_component.xml
M components/data_comps/datm/cime_config/namelist_definition_datm.xml
M components/data_comps/datm/datm_comp_mod.F90
M driver_cpl/cime_config/config_component.xml
M driver_cpl/driver/CMakeLists.txt
A driver_cpl/driver/map_lnd2rof_irrig_mod.F90
M driver_cpl/driver/prep_lnd_mod.F90
M driver_cpl/driver/prep_ocn_mod.F90
M driver_cpl/driver/prep_rof_mod.F90
M driver_cpl/driver/seq_diag_mct.F90
M driver_cpl/shr/seq_flds_mod.F90
M driver_cpl/unit_test/CMakeLists.txt
A driver_cpl/unit_test/map_lnd2rof_irrig_test/CMakeLists.txt
A driver_cpl/unit_test/map_lnd2rof_irrig_test/test_map_lnd2rof_irrig.pf
A scripts/Tools/case.cmpgen_namelists
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/preview_namelists
M scripts/Tools/simple_compare
M share/csm_share/shr/shr_pio_mod.F90
M share/csm_share/test/unit/shr_string_test/test_shr_string.pf
M share/csm_share/unit_test_stubs/pio/CMakeLists.txt
D share/csm_share/unit_test_stubs/pio/do_genf90
D share/csm_share/unit_test_stubs/pio/pio.F90
M share/csm_share/unit_test_stubs/pio/pio.F90.in
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
A utils/python/CIME/case_cmpgen_namelists.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/compare_namelists.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/simple_compare.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/CIME/utils.py
M utils/python/tests/list_tests
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 10-14-2016
Tag: cime5.2.0-alpha.4
Answer Changes: None
Tests: scripts_regression_tests, aux_clm4, cesm prealpha
Dependencies:
Brief Summary: Bring the driver and data model build namelists into python,
add xml schema checks for config_component and namelist_definition files
User interface changes: data model build namelists now in python
Modified files: git diff --name-status
M cime_config/acme/config_grids.xml
D cime_config/acme/machines/ccsm_getenv
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_machines.xml
D cime_config/acme/machines/configure
D cime_config/acme/machines/template.tseries_generate.pl
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/cesm/machines/template.case.run
M cime_config/cesm/machines/template.lt_archive
M cime_config/cesm/machines/template.st_archive
M cime_config/config_tests.xml
A cime_config/xml_schemas/entry_id.xsd
A cime_config/xml_schemas/entry_id_base.xsd
A cime_config/xml_schemas/entry_id_namelist.xsd
D components/data_comps/datm/atm_comp_esmf.F90
D components/data_comps/datm/bld/build-namelist
D components/data_comps/datm/bld/namelist_files/namelist_defaults.xsl
D components/data_comps/datm/bld/namelist_files/namelist_defaults_datm.xml
D components/data_comps/datm/bld/namelist_files/namelist_definition.xsl
D components/data_comps/datm/bld/namelist_files/namelist_definition_datm.xml
D components/data_comps/datm/bld/unit_testers/build-namelist_test.pl
D components/data_comps/datm/bld/unit_testers/env_run.xml
D components/data_comps/datm/bld/unit_testers/user_xml_dir/namelist_defaults_datm.xml
D components/data_comps/datm/bld/unit_testers/user_xml_dir/namelist_definition_datm.xml
M components/data_comps/datm/cime_config/buildlib
M components/data_comps/datm/cime_config/buildnml
M components/data_comps/datm/cime_config/config_component.xml
A components/data_comps/datm/cime_config/namelist_definition_datm.xml
M components/data_comps/datm/datm_comp_mod.F90
D components/data_comps/dice/bld/build-namelist
D components/data_comps/dice/bld/namelist_files/namelist_defaults_dice.xml
D components/data_comps/dice/bld/namelist_files/namelist_definition_dice.xml
M components/data_comps/dice/cime_config/buildlib
M components/data_comps/dice/cime_config/buildnml
M components/data_comps/dice/cime_config/config_component.xml
A components/data_comps/dice/cime_config/namelist_definition_dice.xml
M components/data_comps/dice/dice_comp_mod.F90
D components/data_comps/dice/ice_comp_esmf.F90
D components/data_comps/dlnd/bld/build-namelist
D components/data_comps/dlnd/bld/namelist_files/namelist_defaults_dlnd.xml
D components/data_comps/dlnd/bld/namelist_files/namelist_definition_dlnd.xml
M components/data_comps/dlnd/cime_config/buildlib
M components/data_comps/dlnd/cime_config/buildnml
M components/data_comps/dlnd/cime_config/config_component.xml
A components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml
M components/data_comps/dlnd/dlnd_comp_mod.F90
D components/data_comps/dlnd/lnd_comp_esmf.F90
D components/data_comps/docn/bld/build-namelist
D components/data_comps/docn/bld/namelist_files/namelist_defaults_docn.xml
D components/data_comps/docn/bld/namelist_files/namelist_definition_docn.xml
M components/data_comps/docn/cime_config/buildlib
M components/data_comps/docn/cime_config/buildnml
M components/data_comps/docn/cime_config/config_component.xml
A components/data_comps/docn/cime_config/namelist_definition_docn.xml
M components/data_comps/docn/docn_comp_mod.F90
D components/data_comps/docn/ocn_comp_esmf.F90
D components/data_comps/drof/bld/build-namelist
D components/data_comps/drof/bld/namelist_files/namelist_defaults_drof.xml
D components/data_comps/drof/bld/namelist_files/namelist_definition_drof.xml
M components/data_comps/drof/cime_config/buildlib
M components/data_comps/drof/cime_config/buildnml
M components/data_comps/drof/cime_config/config_component.xml
A components/data_comps/drof/cime_config/namelist_definition_drof.xml
M components/data_comps/drof/drof_comp_mod.F90
D components/data_comps/drof/rof_comp_esmf.F90
D components/data_comps/dwav/bld/build-namelist
D components/data_comps/dwav/bld/namelist_files/namelist_defaults_dwav.xml
D components/data_comps/dwav/bld/namelist_files/namelist_definition_dwav.xml
M components/data_comps/dwav/cime_config/buildlib
M components/data_comps/dwav/cime_config/buildnml
M components/data_comps/dwav/cime_config/config_component.xml
A components/data_comps/dwav/cime_config/namelist_definition_dwav.xml
M components/data_comps/dwav/dwav_comp_mod.F90
M components/stub_comps/satm/cime_config/buildlib
M components/stub_comps/satm/cime_config/config_component.xml
M components/stub_comps/sesp/cime_config/buildlib
M components/stub_comps/sesp/cime_config/config_component.xml
M components/stub_comps/sglc/cime_config/buildlib
M components/stub_comps/sglc/cime_config/config_component.xml
M components/stub_comps/sice/cime_config/buildlib
M components/stub_comps/sice/cime_config/config_component.xml
M components/stub_comps/slnd/cime_config/buildlib
M components/stub_comps/slnd/cime_config/config_component.xml
M components/stub_comps/socn/cime_config/buildlib
M components/stub_comps/socn/cime_config/config_component.xml
M components/stub_comps/srof/cime_config/buildlib
M components/stub_comps/srof/cime_config/config_component.xml
M components/stub_comps/swav/cime_config/buildlib
M components/stub_comps/swav/cime_config/config_component.xml
M components/xcpl_comps/xatm/cime_config/buildlib
M components/xcpl_comps/xatm/cime_config/buildnml
M components/xcpl_comps/xatm/cime_config/config_component.xml
M components/xcpl_comps/xglc/cime_config/buildlib
M components/xcpl_comps/xglc/cime_config/buildnml
M components/xcpl_comps/xglc/cime_config/config_component.xml
M components/xcpl_comps/xice/cime_config/buildlib
M components/xcpl_comps/xice/cime_config/buildnml
M components/xcpl_comps/xice/cime_config/config_component.xml
M components/xcpl_comps/xlnd/cime_config/buildlib
M components/xcpl_comps/xlnd/cime_config/buildnml
M components/xcpl_comps/xlnd/cime_config/config_component.xml
M components/xcpl_comps/xocn/cime_config/buildlib
M components/xcpl_comps/xocn/cime_config/buildnml
M components/xcpl_comps/xocn/cime_config/config_component.xml
M components/xcpl_comps/xrof/cime_config/buildlib
M components/xcpl_comps/xrof/cime_config/buildnml
M components/xcpl_comps/xrof/cime_config/config_component.xml
M components/xcpl_comps/xwav/cime_config/buildlib
M components/xcpl_comps/xwav/cime_config/buildnml
M components/xcpl_comps/xwav/cime_config/config_component.xml
D driver_cpl/bld/build-namelist
M driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
M driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M driver_cpl/bld/namelist_files/namelist_definition_drv_flds.xml
M driver_cpl/cime_config/buildexe
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/config_compsets.xml
A driver_cpl/cime_config/namelist_definition_drv.xml
A driver_cpl/cime_config/namelist_definition_modelio.xml
M driver_cpl/driver/prep_ocn_mod.F90
M driver_cpl/shr/seq_drydep_mod.F90
M externals/pio2/src/flib/pio.F90
M externals/pio2/src/flib/pio_types.F90
M scripts/Testing/testreporter.pl
M scripts/Tools/code_checker
M scripts/Tools/standard_script_setup.py
M scripts/Tools/xmlquery
M scripts/create_clone
M scripts/create_newcase
M scripts/create_test
M scripts/manage_case
M scripts/manage_pes
M scripts/query_testlists
M share/csm_share/shr/shr_pio_mod.F90
M share/csm_share/shr/shr_strdata_mod.F90
M share/csm_share/shr/shr_stream_mod.F90
M tools/configure
D tools/system_tests/configure.test/configtest.pl
D utils/perl5lib/Streams/TemplateGeneric.pm
M utils/python/CIME/SystemTests/nck.py
M utils/python/CIME/SystemTests/pea.py
M utils/python/CIME/SystemTests/pem.py
M utils/python/CIME/SystemTests/seq.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/component.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/files.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/grids.py
A utils/python/CIME/XML/namelist_definition.py
M utils/python/CIME/XML/testlist.py
M utils/python/CIME/XML/testspec.py
M utils/python/CIME/build.py
M utils/python/CIME/buildnml.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_submit.py
M utils/python/CIME/compare_namelists.py
M utils/python/CIME/get_timing.py
M utils/python/CIME/hist_utils.py
A utils/python/CIME/namelist.py
A utils/python/CIME/nmlgen.py
M utils/python/CIME/provenance.py
M utils/python/CIME/simple_compare.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/CIME/test_utils.py
M utils/python/CIME/tests/SystemTests/test_system_tests_compare_two.py
M utils/python/CIME/utils.py
M utils/python/CIME/wait_for_tests.py
M utils/python/tests/CTestConfig.cmake
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 10-04-2016
Tag: cime5.2.0-alpha.3
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary: updates based on cesm2_0_beta02 testing, add memleak_tolerance check, better TestStatus for incomplete tests. new query_testlist feature.
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/allactive/config_pesall.xml
M cime_config/acme/config_archive.xml
M cime_config/acme/config_files.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_build.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
D cime_config/acme/machines/env_mach_specific.penn
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_archive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/config_tests.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/testdefs/testlist_drv.xml
M externals/pio2/src/clib/pioc.c
M scripts/create_test
A scripts/query_testlists
D tools/cprnc/CMake/FindNetcdf.cmake
M tools/cprnc/CMakeLists.txt
M tools/cprnc/README
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/lt_archive.py
M utils/python/CIME/XML/testlist.py
M utils/python/CIME/case.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/hist_utils.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/CIME/test_utils.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
Originator: Jim Edwards
Date: 09-27-2016
Tag: cime5.2.0-alpha01
Answer Changes: None
Tests: scripts_regression_tests
Dependencies: None
Brief Summary: Bug fixes related to cesm2_0_beta02 testing, EBM liquid and ice mapping files seperated, RASM bug fix
User interface changes: none
Modified files: git diff --name-status
M cime_config/acme/config_archive.xml
M cime_config/acme/machines/buildlib.csm_share
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/acme/machines/config_pio.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/config_tests.xml
M driver_cpl/bld/build-namelist
M driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M driver_cpl/cime_config/buildnml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/driver/cesm_comp_mod.F90
M driver_cpl/driver/seq_diag_mct.F90
M driver_cpl/shr/seq_flds_mod.F90
M driver_cpl/shr/seq_infodata_mod.F90
M scripts/Tools/cs_status
D scripts/Tools/taskmaker
M scripts/Tools/xmlquery
M scripts/create_test
A utils/data_assimilation/da_no_data_mod.sh
A utils/python/CIME/SystemTests/dae.py
M utils/python/CIME/SystemTests/eri.py
M utils/python/CIME/SystemTests/pet.py
M utils/python/CIME/SystemTests/pfs.py
M utils/python/CIME/XML/entry_id.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_pes.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/generic_xml.py
M utils/python/CIME/XML/machines.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/check_input_data.py
D utils/python/CIME/task_maker.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 09-08-2016
Tag: cime5.0.11
Answer Changes: None
Tests: scripts_regression_tests, problem related testing
Dependencies: none
Brief Summary: Fixes issues found in cime5.0.10
Change DOUT_S default for cesm
Fix cost_estimate for timing tables
Fix issue with task count for archive tools
Restore MASK_GRID xml variable
Fix issues with user_mods path
add provenance save capabilities for acme
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/allactive/config_pes.xml.cime2
M cime_config/acme/allactive/config_pesall.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/cime_config/config_compsets.xml
M scripts/Tools/code_checker
M scripts/Tools/getTiming
A scripts/Tools/save_provenance
M utils/python/CIME/SystemTests/ssp.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/grids.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
A utils/python/CIME/get_timing.py
M utils/python/CIME/hist_utils.py
A utils/python/CIME/provenance.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/user_mod_support.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: 08-31-2016
Tag: cime5.0.9
Answer Changes: None
Tests: scripts_regression_tests, several multiinstance and component tests
Dependencies:
Brief Summary: Fix a host of issues related to testing, remove remaining
esmf code, update pio externals,
User interface changes: add --allow-baseline-overwrite flag
Modified files: git diff --name-status
M cime_config/acme/config_files.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_machines.xml
M cime_config/cesm/config_archive.xml
M cime_config/cesm/config_files.xml
M cime_config/cesm/machines/config_batch.xml
M cime_config/cesm/machines/config_build.xml
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
M cime_config/cesm/machines/config_pio.xml
A cime_config/config_tests.xml
M cime_config/xml_schemas/archive.xsd
M components/data_comps/dice/bld/build-namelist
D components/stub_comps/satm/cpl/atm_comp_esmf.F90
D components/stub_comps/sesp/cpl/esp_comp_esmf.F90
D components/stub_comps/sglc/cpl/glc_comp_esmf.F90
D components/stub_comps/sice/cpl/ice_comp_esmf.F90
D components/stub_comps/slnd/cpl/lnd_comp_esmf.F90
D components/stub_comps/socn/cpl/ocn_comp_esmf.F90
D components/stub_comps/srof/cpl/rof_comp_esmf.F90
D components/stub_comps/swav/cpl/wav_comp_esmf.F90
D components/xcpl_comps/xatm/cpl/atm_comp_esmf.F90
D components/xcpl_comps/xglc/cpl/glc_comp_esmf.F90
D components/xcpl_comps/xice/cpl/ice_comp_esmf.F90
D components/xcpl_comps/xlnd/cpl/lnd_comp_esmf.F90
D components/xcpl_comps/xocn/cpl/ocn_comp_esmf.F90
D components/xcpl_comps/xrof/cpl/rof_comp_esmf.F90
D components/xcpl_comps/xwav/cpl/wav_comp_esmf.F90
M driver_cpl/bld/build-namelist
M driver_cpl/bld/namelist_files/namelist_defaults_drv.xml
M driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M driver_cpl/cime_config/config_component.xml
M externals/pio1/pio/box_rearrange.F90.in
M externals/pio1/pio/pio_types.F90
M externals/pio1/pio/piolib_mod.F90
M externals/pio2/CMakeLists.txt
M externals/pio2/ctest/CTestEnvironment-nwsc.cmake
M externals/pio2/ctest/runcdash-cgd-nag.sh
M externals/pio2/ctest/runctest-cgd.sh
M externals/pio2/doc/CMakeLists.txt
M externals/pio2/doc/Doxyfile.in
M externals/pio2/doc/source/Error.txt
M externals/pio2/doc/source/Examples.txt
M externals/pio2/doc/source/Installing.txt
A externals/pio2/doc/source/Testing.txt
M externals/pio2/doc/source/base.txt
M externals/pio2/doc/source/mach_walkthrough.txt
M externals/pio2/examples/c/example2.c
A externals/pio2/examples/c/valsupp_example1.supp
M externals/pio2/examples/f03/examplePio.f90
M externals/pio2/src/clib/CMakeLists.txt
M externals/pio2/src/clib/bget.c
M externals/pio2/src/clib/config.h.in
M externals/pio2/src/clib/pio.h
M externals/pio2/src/clib/pio_darray.c
A externals/pio2/src/clib/pio_darray_async.c
M externals/pio2/src/clib/pio_file.c
A externals/pio2/src/clib/pio_get_nc_async.c
M externals/pio2/src/clib/pio_internal.h
M externals/pio2/src/clib/pio_lists.c
A externals/pio2/src/clib/pio_msg.c
M externals/pio2/src/clib/pio_nc.c
M externals/pio2/src/clib/pio_nc4.c
A externals/pio2/src/clib/pio_nc_async.c
A externals/pio2/src/clib/pio_put_nc_async.c
A externals/pio2/src/clib/pio_varm.c
M externals/pio2/src/clib/pioc.c
M externals/pio2/src/clib/pioc_support.c
M externals/pio2/src/flib/pio.F90
M externals/pio2/src/flib/pio_nf.F90
M externals/pio2/src/gptl/perf_mod.F90
A externals/pio2/tests/performance/kt.PIO1.perfmakefile
M externals/pio2/tests/performance/pioperformance.F90
M externals/pio2/tests/unit/CMakeLists.txt
M externals/pio2/tests/unit/basic_tests.F90
M externals/pio2/tests/unit/driver.F90
A externals/pio2/tests/unit/test_darray.c
A externals/pio2/tests/unit/test_darray_async.c
A externals/pio2/tests/unit/test_intercomm.c
A externals/pio2/tests/unit/test_names.c
M externals/pio2/tests/unit/test_nc4.c
M scripts/Testing/Testcases/NOC_script
D scripts/Testing/Testcases/config_tests.xml
M scripts/Testing/testreporter.pl
D scripts/Tools/baseline_gen_comp
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
A scripts/Tools/compare_test_results
D scripts/Tools/component_compare.sh
A scripts/Tools/component_compare_baseline
A scripts/Tools/component_compare_move
D scripts/Tools/component_compare_move.sh
A scripts/Tools/component_compare_test
D scripts/Tools/component_compare_test.sh
D scripts/Tools/component_compgen_baseline.sh
D scripts/Tools/component_generate.sh
A scripts/Tools/component_generate_baseline
M scripts/Tools/xmlchange
M scripts/create_newcase
M scripts/create_test
M scripts/manage_case
M share/csm_share/shr/shr_pio_mod.F90
M tools/configure
M tools/cprnc/README
M tools/cprnc/compare_vars_mod.F90.in
M utils/perl5lib/Streams/TemplateGeneric.pm
M utils/python/CIME/SystemTests/README
M utils/python/CIME/SystemTests/eri.py
M utils/python/CIME/SystemTests/err.py
M utils/python/CIME/SystemTests/lii.py
M utils/python/CIME/SystemTests/nck.py
M utils/python/CIME/SystemTests/pea.py
M utils/python/CIME/SystemTests/pet.py
A utils/python/CIME/SystemTests/rep.py
M utils/python/CIME/SystemTests/ssp.py
M utils/python/CIME/SystemTests/system_tests_common.py
A utils/python/CIME/SystemTests/system_tests_compare_two.py
A utils/python/CIME/SystemTests/test_utils/__init__.py
A utils/python/CIME/SystemTests/test_utils/user_nl_utils.py
M utils/python/CIME/XML/batch.py
A utils/python/CIME/XML/build.py
M utils/python/CIME/XML/compilers.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/machines.py
M utils/python/CIME/XML/pes.py
M utils/python/CIME/bless_test_results.py
M utils/python/CIME/buildnml.py
M utils/python/CIME/case.py
M utils/python/CIME/case_run.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_test.py
M utils/python/CIME/check_lockedfiles.py
M utils/python/CIME/compare_namelists.py
A utils/python/CIME/compare_test_results.py
A utils/python/CIME/hist_utils.py
D utils/python/CIME/macros.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/test_scheduler.py
M utils/python/CIME/test_status.py
A utils/python/CIME/tests/README
A utils/python/CIME/tests/SystemTests/__init__.py
A utils/python/CIME/tests/SystemTests/test_system_tests_compare_two.py
A utils/python/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
A utils/python/CIME/tests/SystemTests/test_utils/__init__.py
A utils/python/CIME/tests/SystemTests/test_utils/test_user_nl_utils.py
A utils/python/CIME/tests/__init__.py
A utils/python/CIME/tests/case_fake.py
A utils/python/CIME/tests/test_case_fake.py
M utils/python/CIME/utils.py
M utils/python/jenkins_generic_job.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: Aug 11, 2012
Tag: cime5.0.8
Answer Changes: None
Tests: scripts_regression_tests,
Dependencies:
Brief Summary: fix error in taskmaker task counter,
add error code for component_compare_test,
fix unit test for run_cmd
improve cime_bisect tool
add back software_environement.txt
User interface changes:
Modified files: git diff --name-status
M cime_config/acme/config_files.xml
D scripts/Testing/Testcases/HOMME_script
M scripts/Tools/cime_bisect
M scripts/Tools/component_compare_test.sh
A utils/python/CIME/SystemTests/homme.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/build.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/task_maker.py
M utils/python/CIME/utils.py
M utils/python/update_acme_tests.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: Aug 10, 2016
Tag: cime5.0.7
Answer Changes: None
Tests: None
Dependencies:
Brief Summary: Comment out code added in PR 337 until it works for tcsh and csh users
User interface changes:
Modified files: git diff --name-status
utils/python/CIME/case_setup.py
======================================================================
======================================================================
Originator: Jim Edwards
Date: Aug 10, 2016
Tag: cime5.0.6
Answer Changes: None
Tests: scripts_regression_tests - others run for specific updates
Dependencies: None
Brief Summary:
d083933 (mydev/user_mod_0len_fix, user_mod_0len_fix) user_nl_ file was being removed if a user_nl file in any mods directory was missing
39de940 Fix comment
0773aac Increase default walltime for blues
c4dce0f Remove last uses of taskmaker.pl
76eb1bc Remove -A directive from edison
c9b8910 Seperate out modelio namelist definition since it uses the same names, but defines them differently
805ad7f Add -mismatch_all when compiling cism with nag
fff9a9b (origin/jgfouca/minor_timing_chg) Set CHECK_TIMING to true in addition to SAVE_TIMING if --save-timing given to create_test
f25a518 (origin/jgfouca/wait_for_test_refactor) wait_for_tests will now always specifically wait for the RUN phase
e19e72c Update drv buildnamelist test to work with cime5
893c6c6 Add support for LANL's mustang and wolf to cime
c103e08 (origin/rljacob/machines/fix-acme) Add SAVE_TIMING_DIR for edison
84000ee Fixing the runjob command for ACME on Mira
1a55232 Adding config for ERS_Ld3.ne30_g16_rx1.A test
d1df346 Error handling; check for correct length of key-value pair array after split
fa1cb49 listofsettings allways an array, test for length of array
a6a3d33 Changed number of expected positional arguments to 0 or 1 , warnings and debug statements
74d2100 checking for missing values in settings string from command line
cd350da (origin/santos/fix-env-leakage) Remove `GenericXML` check for env variables.
43807a5 Add white space after batch directives in script templates
edc1671 Autosave environment information in case_setup.
c3f8f84 (origin/jgfouca/fix_create_test_not_catching_missing_project) create_test was not failing the create_newcase phase when project info was missing
731f8a0 (origin/jgfouca/add_queue_option_to_create_test) Add ability to select queue to create_test and create_newcase
11877a2 (origin/jgfouca/even_more_sky_env_fixes) Fix mismatch between MPI_PATH and the mpi module being loaded
0268cb7 Only report present files in debug mode
47b4216 Fix spelling mistake
07aeb52 Get cime_developer building again on skybridge.
d8f331c moved batchdirectives to top of the template
dbbd3a1 Users should get a nice error when their python is too old
ca3e004 Fix skybridge environment problems, port to new SEMS modules
e266dd9 Remove sentinel concept from jenkins_generic_job
User interface changes: None
Modified files: git diff --name-status
M cime_config/acme/allactive/config_pesall.xml
M cime_config/acme/machines/config_batch.xml
M cime_config/acme/machines/config_compilers.xml
M cime_config/acme/machines/config_machines.xml
D cime_config/acme/machines/env_mach_specific.melvin
D cime_config/acme/machines/env_mach_specific.redsky
D cime_config/acme/machines/env_mach_specific.skybridge
D cime_config/acme/machines/taskmaker.pl
M cime_config/acme/machines/template.case.run
M cime_config/acme/machines/template.case.test
M cime_config/acme/machines/template.lt_archive
M cime_config/acme/machines/template.ocn_diagnostics
M cime_config/acme/machines/template.st_archive
M cime_config/acme/machines/template.timeseries
M cime_config/acme/machines/template.tseries_generate.pl
D cime_config/acme/machines/userdefined_laptop_template/mkbatch.no_batch_system
M cime_config/cesm/machines/config_compilers.xml
M cime_config/cesm/machines/config_machines.xml
D cime_config/cesm/machines/taskmaker.pl
D cime_config/cesm/machines/userdefined_laptop_template/mkbatch.no_batch_system
M driver_cpl/bld/build-namelist
M driver_cpl/bld/testdir/env_build.xml
M driver_cpl/bld/testdir/env_case.xml
M driver_cpl/bld/testdir/env_mach_pes.xml
M driver_cpl/bld/testdir/env_run.xml
M driver_cpl/cime_config/buildnml
M scripts/Testing/Testcases/config_tests.xml
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.submit
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/component_compgen_baseline.sh
M scripts/Tools/cs_status
M scripts/Tools/jenkins_generic_job
M scripts/Tools/simple_compare
M scripts/Tools/standard_script_setup.py
A scripts/Tools/taskmaker
M scripts/Tools/wait_for_tests
M scripts/create_newcase
M scripts/create_test
M utils/python/CIME/SystemTests/eri.py
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/SystemTests/err.py
M utils/python/CIME/SystemTests/ers.py
M utils/python/CIME/SystemTests/ert.py
M utils/python/CIME/SystemTests/icp.py
M utils/python/CIME/SystemTests/lii.py
M utils/python/CIME/SystemTests/nck.py
M utils/python/CIME/SystemTests/ncr.py
M utils/python/CIME/SystemTests/pea.py
M utils/python/CIME/SystemTests/pem.py
M utils/python/CIME/SystemTests/pet.py
M utils/python/CIME/SystemTests/pfs.py
M utils/python/CIME/SystemTests/seq.py
M utils/python/CIME/SystemTests/sms.py
M utils/python/CIME/SystemTests/ssp.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/XML/env_mach_specific.py
M utils/python/CIME/XML/generic_xml.py
A utils/python/CIME/bless_test_results.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/case_setup.py
M utils/python/CIME/case_st_archive.py
M utils/python/CIME/case_test.py
M utils/python/CIME/check_input_data.py
A utils/python/CIME/compare_namelists.py
A utils/python/CIME/simple_compare.py
M utils/python/CIME/task_maker.py
M utils/python/CIME/test_scheduler.py
A utils/python/CIME/test_status.py
M utils/python/CIME/user_mod_support.py
M utils/python/CIME/utils.py
A utils/python/CIME/wait_for_tests.py
D utils/python/compare_namelists.py
A utils/python/jenkins_generic_job.py
D utils/python/simple_compare.py
M utils/python/tests/scripts_regression_tests.py
D utils/python/wait_for_tests.py
======================================================================
======================================================================
Originator: Bill Sacks
Date: Aug 02, 2016
Tag: cime5.0.5
Answer Changes: None
Tests: scripts_regression_tests
Dependencies: None (removes dependency of cime5.0.4 on clm branch)
Description:
- move LII test from CLM back to CIME (until new API is solidified)
Modified files:
utils/python/CIME/SystemTests/lii.py
======================================================================
Originator: Jim Edwards
Date: Aug 01, 2016
Tag: cime5.0.4
Answer Changes: None
Tests: scripts_regression_tests
Dependencies: Needs clm branch containing LII test
Description:
- Updates of hobart machine
- Put provenance back in README -
- Update TestStatus to run tests multiple times in a case - Fix for
- Add README files back to test directories
- Dynamically search for system tests, move LII test to CLM cime_config
- Add python profiling tool
- Minor bug fixes in prep_ocn_mod and prep_wav_mod pointed out by CRAY compiler
Modified files:
cime_config/acme/config_files.xml
cime_config/cesm/config_files.xml
cime_config/cesm/machines/config_batch.xml
cime_config/cesm/machines/config_compilers.xml
cime_config/cesm/machines/config_machines.xml
driver_cpl/driver/prep_ocn_mod.F90
driver_cpl/driver/prep_wav_mod.F90
scripts/Testing/Testcases/README
scripts/Tools/advanced-py-prof
scripts/Tools/bless_test_results
scripts/Tools/case.build
scripts/Tools/simple-py-prof
scripts/create_test
utils/python/CIME/SystemTests/README
utils/python/CIME/SystemTests/lii.py
utils/python/CIME/SystemTests/system_tests_common.py
utils/python/CIME/XML/env_test.py
utils/python/CIME/case.py
utils/python/CIME/case_test.py
utils/python/CIME/check_input_data.py
utils/python/CIME/system_test.py
utils/python/CIME/test_scheduler.py
utils/python/CIME/test_utils.py
utils/python/CIME/user_mod_support.py
utils/python/CIME/utils.py
utils/python/cs.submit.template
utils/python/tests/scripts_regression_tests.py
====================================================================
Originator: Jim Edwards
Date: July 26, 2016
Tag: cime5.0.3
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- fixes as a result of cesm2_alpha01b testing
- print output from buildnml
- improve mismatch argument to NAG compiler
- fix memleak error if baseline not found
- add support to create_test for ascii testfile
- move pecount support from create_test to create_newcase
- fix LII test, fix ERP test
- reintroduce --verbose option
User interface changes: none
Modified files: git diff --name-status
M ChangeLog
M cime_config/acme/config_files.xml
M cime_config/cesm/machines/Makefile
M cime_config/cesm/machines/config_compilers.xml
A cime_config/cesm/machines/nag_mpi_argument.txt
M driver_cpl/cime_config/buildexe
M scripts/Tools/case.build
M scripts/Tools/code_checker
M scripts/Tools/component_compare_test.sh
M scripts/Tools/preview_namelists
M scripts/create_newcase
M scripts/create_test
M utils/python/CIME/SystemTests/erp.py
M utils/python/CIME/SystemTests/lii.py
M utils/python/CIME/SystemTests/system_tests_common.py
M utils/python/CIME/XML/env_batch.py
M utils/python/CIME/build.py
M utils/python/CIME/case.py
M utils/python/CIME/preview_namelists.py
M utils/python/CIME/system_test.py
M utils/python/CIME/utils.py
M utils/python/tests/scripts_regression_tests.py
M utils/python/update_acme_tests.py
======================================================================
Originator: Jim Edwards
Date: July 22, 2016
Tag: cime5.0.2
Answer Changes: None
Tests:
Dependencies:
Brief Summary: further fixes as a result of cesm2_alpha01 testing
User interface changes:
Modified files: git diff --name-status
d518834 minor change for hobart only
605e942 Merge pull request #283 from ESMCI/mira_walltime_fix
5ef8068 Merge pull request #284 from mvertens/newtests
462810e replaced ww3 with stub wave in several tests that are known to fail
a8b9e7c need to return default walltime
======================================================================
======================================================================
Originator: Jim Edwards
Date: July 22, 2016
Tag: cime5.0.1
Answer Changes: None
Tests: cesm prealpha, prebeta, aux_*
Dependencies:
Brief Summary: fixes as a result of cesm2_alpha01 testing
User interface changes:
Modified files: git diff --name-status
49e3c29 (HEAD, tag: cime5.0.1) Minor fix
11d61ce Merge pull request #279 from ESMCI/jgfouca/cime_bisect
b15cf46 Upgrade cime_bisect
873856a Merge pull request #278 from jedwards4b/minor_fixes_for_cesm_port
b990f48 add code to cp testreporter script for cesm
6ad54e9 Merge pull request #277 from fischer-ncar/testreporter_fix
be6d1b3 both compare and generate baseline_action_codes are allowed
e76ddc1 Fix for testreporter on hobart.
49fb888 fix issue with _caseroot when cloning
6d29a93 Update testreporter to work with updated ESMCI CIME
b7ed88f Updating to current ESMCI cime master
dbf9a47 Merge pull request #276 from ESMCI/jayeshkrishna/get_mira_working_for_ac
me
b5a2ce0 Get Mira working with acme
7adda2e updates for cesm allactive tests and compsets
======================================================================
======================================================================
Originator: Jim Edwards
Date: July 20th 2016
Tag: cime5.0.0
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary: Scripts reimplemented in python
User interface changes: Lots of new options, options that are
no longer there.
Modified files: too numerous to mention, please see the git log
======================================================================
Originator: mvertens
Date: July 9, 2016
Tag: cime4.5.23
Answer Changes: None
Tests: Ran prealph intel tests and compared to cesm1_5_alpha07e
Dependencies: None
Brief Summary: Removed all code related to using the ESMF interfaces
Modified files: git diff --name-status
M cime_config/cesm/config_grids.xml
M driver_cpl/cime_config/config_component.xml
M driver_cpl/driver/cesm_comp_mod.F90
M driver_cpl/driver/cesm_driver.F90
M driver_cpl/driver/component_mod.F90
M driver_cpl/driver/component_type_mod.F90
M driver_cpl/driver/seq_diag_mct.F90
M driver_cpl/driver/seq_map_mod.F90
M driver_cpl/driver/seq_map_type_mod.F90
M driver_cpl/shr/seq_comm_mct.F90
Deleted files:
D driver_cpl/driver/cpl_comp_esmf.F90
D driver_cpl/driver/seq_map_esmf.F90
D driver_cpl/shr_esmf/esmf2mct_mod.F90
D driver_cpl/shr_esmf/esmfshr_attribute_mod.F90
D driver_cpl/shr_esmf/esmfshr_infodata_mod.F90
D driver_cpl/shr_esmf/esmfshr_mod.F90
D driver_cpl/shr_esmf/esmfshr_util_mod.F90
D driver_cpl/shr_esmf/mct2esmf_mod.F90
======================================================================
Originator: fischer-ncar
Date: July 7, 2016
Tag: cime4.5.22
Answer Changes: None
Tests:
Dependencies:
Brief Summary: Fix broken compset names
User interface changes:
Modified files: git diff --name-status
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/testlist_allactive.xml
======================================================================
Originator: cacraigucar, fischer-ncar
Date: July 7, 2016
Tag: cime4.5.21
Answer Changes: Possible answer changes only on corip1
Tests: Ran with CAM tag geotrace3_cac_n59_cam5_4_57
Dependencies: None
Brief Summary:
Incorporating water isotopes
Update modules for corip1
User interface changes: none
Modified files: git diff --name-status
M ChangeLog
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/config_pes.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/machines/config_machines.xml
M driver_cpl/bld/build-namelist
M driver_cpl/bld/namelist_files/namelist_definition_drv.xml
M driver_cpl/cime_config/config_component.xml
A driver_cpl/driver/mrg_mod.F90
M driver_cpl/driver/prep_ice_mod.F90
M driver_cpl/driver/prep_ocn_mod.F90
M driver_cpl/driver/prep_rof_mod.F90
M driver_cpl/driver/seq_diag_mct.F90
M driver_cpl/driver/seq_flux_mct.F90
M driver_cpl/shr/seq_flds_mod.F90
M share/csm_share/shr/shr_const_mod.F90
M share/csm_share/shr/shr_flux_mod.F90
A share/csm_share/shr/water_isotopes.F90
A share/csm_share/shr/water_types.F90
======================================================================
Originator: fischer-ncar, Brain Kauffman
Date: 6 July 2016
Tag: cime4.5.20
Answer Changes: None
Tests:
Dependencies:
Brief Summary: Updates to config_files.xml and config_grids.xml to support mpas-o
User interface changes:
Modified files: git diff --name-status
M cime_config/cesm/config_files.xml
M cime_config/cesm/config_grids.xml
======================================================================
Originator: apcraig
Date: 6 July 2016
Tag: cime4.5.19
Answer Changes: None
Tests:
Dependencies:
Brief Summary: Addition of ice to ocean coupling fields Fioi_bcphi,
Fioi_bcpho, Fioi_flxdst
User interface changes:
Modified files: git diff --name-status
M driver_cpl/shr/seq_flds_mod.F90
======================================================================
Originator: fischer-ncar, jtruesdal
Date: 6 July 2016
Tag: cime4.5.18
Answer Changes: Answer changes for compset with WaveWatch turned on.
All others are bit-for-bit.
Tests: Namelist test ran on yellowstone, WAV_GRID manually looked at.
Dependencies:
Brief Summary: Add support to run WaveWatch. Allactive
compset not being tested were removed.
User interface changes:
Modified files: git diff --name-status
M cime_config/cesm/allactive/config_compsets.xml
M cime_config/cesm/allactive/config_pes.xml
M cime_config/cesm/allactive/testlist_allactive.xml
M cime_config/cesm/config_grids.xml
======================================================================
Originator: fischer-ncar
Date: 21 June 2016
Tag: cime4.5.17
Answer Changes: None
Tests:
Dependencies: None
Brief Summary:
PR # 457: Remove ESMF tests and create ChangeLog and ChangeLog_template
User interface changes: none
Modified files: git diff --name-status
A ChangeLog
A ChangeLog_template
M cime_config/cesm/allactive/testlist_allactive.xml
M driver_cpl/cime_config/testdefs/testlist_drv.xml
======================================================================
Originator:
Date:
Tag: cimeX.Y.Z
Answer Changes: [None, Round Off, Climate Changing]
Tests:
Dependencies:
Brief Summary:
User interface changes:
Modified files: git diff --name-status
======================================================================
Computing file changes ...
