Revision 3f4b713a8f1b5fd01295e6d15630b01d31b0cb17 authored by morgankain on 22 January 2021, 18:07:07 UTC, committed by morgankain on 22 January 2021, 18:07:07 UTC
1 parent b4e1723
model_complexity_setup.R
if (one_off & !all_permuted) {
## sequence of increasing model complexity
model.runs <- data.frame(
use.host_abundance = c(FALSE, TRUE, TRUE, TRUE, TRUE, TRUE)
, use.mosq_abundance = c(TRUE, FALSE, TRUE, TRUE, TRUE, TRUE)
, use.mosq_survival = c(TRUE, TRUE, FALSE, TRUE, TRUE, TRUE)
, use.mosq_bite_pref = c(TRUE, TRUE, TRUE, FALSE, TRUE, TRUE)
, use.host_seroprev = c(TRUE, TRUE, TRUE, TRUE, FALSE, TRUE)
)
use.cond_titer <- TRUE
} else if (all_permuted & !one_off) {
## Check the host ranks when a given component is set to true
model.runs <- expand.grid(
use.host_abundance = c(TRUE, FALSE)
, use.mosq_abundance = c(TRUE, FALSE)
, use.mosq_survival = c(TRUE, FALSE)
, use.mosq_bite_pref = c(TRUE, FALSE)
, use.host_seroprev = c(TRUE, FALSE)
)
use.cond_titer <- TRUE
} else {
model.runs <- data.frame(
use.host_abundance = use.host_abundance
, use.mosq_abundance = use.mosq_abundance
, use.mosq_survival = use.mosq_survival
, use.mosq_bite_pref = use.mosq_bite_pref
, use.host_seroprev = use.host_seroprev
)
use.cond_titer <- TRUE
}
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