Revision 421dda3f405fcd884def9b072bd831386d6a6d63 authored by Albert Tian Chen on 19 January 2021, 14:28:10 UTC, committed by GitHub on 19 January 2021, 14:28:10 UTC
* working rclone exclusions * Rework GISAID ingest - split files based on existing Accession IDs and MD5 hashed sequences, instead of by submission date. Should reduce the burden of daily updates/alignment processes * Process host metadata * For duplicate sequences, only process the SNVs from the latest one * Helper script for migrating after preprocessing change * Add back temp flags for intermediate files * Update data endpoint * Stop tracking more deployment stuff * Fix bug when removing duplicate sequences on SNV level * Add private site config file, and config option for hashing Accession IDs * Ignore GISAID update script
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| File | Mode | Size |
|---|---|---|
| build | ||
| config | ||
| pymol | ||
| server | ||
| src | ||
| static_data | ||
| tools | ||
| workflow_custom_ingest | ||
| workflow_genbank_ingest | ||
| workflow_gisaid_ingest | ||
| workflow_main | ||
| .browserslistrc | -rw-r--r-- | 140 bytes |
| .dockerignore | -rw-r--r-- | 152 bytes |
| .editorconfig | -rw-r--r-- | 235 bytes |
| .eslintignore | -rw-r--r-- | 64 bytes |
| .gcloudignore | -rw-r--r-- | 229 bytes |
| .gitattributes | -rw-r--r-- | 41 bytes |
| .gitignore | -rw-r--r-- | 1.7 KB |
| .npmrc | -rw-r--r-- | 16 bytes |
| .watchmanconfig | -rw-r--r-- | 0 bytes |
| LICENSE | -rw-r--r-- | 1.2 KB |
| README.md | -rw-r--r-- | 8.7 KB |
| babel.config.js | -rw-r--r-- | 175 bytes |
| environment.yml | -rw-r--r-- | 456 bytes |
| jsconfig.json | -rw-r--r-- | 145 bytes |
| package-lock.json | -rw-r--r-- | 507.8 KB |
| package.json | -rw-r--r-- | 5.1 KB |
| tsconfig.json | -rw-r--r-- | 166 bytes |
| webpack.config.dev.js | -rw-r--r-- | 3.6 KB |
| webpack.config.prod.js | -rw-r--r-- | 4.6 KB |
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