https://github.com/connor-lab/ncov2019-artic-nf
Revision 42a79999f11304671b9d22e4959b0167b2130944 authored by Thanh Lê on 06 April 2020, 09:49:06 UTC, committed by GitHub on 06 April 2020, 09:49:06 UTC
pin ivar to 1.2
1 parent f0ba0a1
Tip revision: 42a79999f11304671b9d22e4959b0167b2130944 authored by Thanh Lê on 06 April 2020, 09:49:06 UTC
Update environment-illumina.yml (#12)
Update environment-illumina.yml (#12)
Tip revision: 42a7999
Singularity.artic-ncov2019-medaka
Bootstrap: docker
From: continuumio/miniconda3:latest
%files
environment-medaka.yml /environment.yml
%labels
authors="Matt Bull"
description="Docker image containing all requirements for the ARTIC project's ncov2019 pipeline"
%post
apt-get update && apt-get install -y g++ git make procps rsync && apt-get clean -y
/opt/conda/bin/conda env create -f /environment.yml && /opt/conda/bin/conda clean -a
PATH=/opt/conda/envs/fieldbioinformatics-medaka/bin:$PATH
%environment
export PATH=/opt/conda/envs/fieldbioinformatics-medaka/bin:$PATH
%runscript
exec "/opt/conda/envs/fieldbioinformatics-medaka/bin/artic" "$@"
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