Revision 42b3c6ebb50ecaabf92e3d168da1be05a640f9f2 authored by davelopez on 11 May 2022, 14:31:46 UTC, committed by davelopez on 11 May 2022, 14:31:46 UTC
1 parent 06d37d9
encode_datasets.loc.sample
#This is a sample file distributed with Galaxy that enables tools
#to use ENCODE data. The encode_datasets.loc file has this format
#(white space characters are TAB characters):
#
#<EncodeGroup> <build> <DisplayName> <UniqueID> <FullPathToFile> <Format>
# Encode Groups: ShortHandCode = Group
# CC = chromatin and chromosomes
# GT = genes and transcripts
# MSA = multi-species sequence analysis
# TR = transcription regulation
# ALD = All Latest Datasets
#All files are assumbed to be BED.
#
#ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed bed
#ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff gff
#ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed bed
#ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff gff
#ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed bed
#ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff gff
#ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed bed
#ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff gff
#ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed bed
#ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff gff
#ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed bed
#ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff gff
#ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed bed
#ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff gff
#ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed bed
#ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff gff
#ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed bed
#ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff gff
#ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed bed
#ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff gff
#ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed bed
#ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff gff
#ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed bed
#ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed bed
#ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff gff
#ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff gff
#ALD hg17 Latest Datasets (20060209) [gencode_partitioned] all_latest_datasets.20060209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed bed
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