https://github.com/galaxyproject/galaxy
Revision 44903311b59632f6fdd105a99facbf3e435ecf85 authored by mvdbeek on 08 October 2023, 13:35:44 UTC, committed by mvdbeek on 08 October 2023, 13:37:07 UTC
Fixes:
```
Traceback (most recent call last):
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/webapps/galaxy/buildapp.py", line 59, in app_pair
app = galaxy.app.UniverseApplication(global_conf=global_conf, is_webapp=True, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/app.py", line 691, in __init__
self._configure_toolbox()
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/app.py", line 309, in _configure_toolbox
self._toolbox = tools.ToolBox(self.config.tool_configs, self.config.tool_path, self)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tools/__init__.py", line 420, in __init__
super().__init__(
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 237, in __init__
self._load_tool_panel_views()
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 600, in _load_tool_panel_views
self._tool_panel_view_rendered[key] = view.apply_view(self._integrated_tool_panel, registry)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/views/static.py", line 195, in apply_view
return definition_with_items_to_panel(root_defintion, items=root_items)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/views/static.py", line 87, in definition_with_items_to_panel
panel = definition_with_items_to_panel(section_def, allow_sections=False)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/views/static.py", line 142, in definition_with_items_to_panel
tool = toolbox_registry.get_tool(tool_id)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 107, in get_tool
return self.__toolbox.get_tool(tool_id)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 719, in get_tool
tool_lineage = self._lineage_map.get(tool_id)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/tool_util/toolbox/lineages/factory.py", line 47, in get
tool = self.app.toolbox._tools_by_id.get(tool_id)
^^^^^^^^^^^^^^^^
File "/cvmfs/test.galaxyproject.org/galaxy/lib/galaxy/app.py", line 351, in toolbox
return self._toolbox
^^^^^^^^^^^^^
AttributeError: 'UniverseApplication' object has no attribute '_toolbox'
```
when attempting to apply a panel view that contains tools that aren't
installed on a server.
1 parent 612f1d6
Tip revision: 44903311b59632f6fdd105a99facbf3e435ecf85 authored by mvdbeek on 08 October 2023, 13:35:44 UTC
Avoid AttributeError when accessing toolbox
Avoid AttributeError when accessing toolbox
Tip revision: 4490331
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