Revision 4493f82d62152dadc263ad21e978efd0771908be authored by Chase W. Nelson on 18 September 2020, 06:41:19 UTC, committed by Chase W. Nelson on 18 September 2020, 06:41:19 UTC
1 parent 6aba08a
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images
.gitattributes -rw-r--r-- 66 bytes
.gitignore -rw-r--r-- 52 bytes
ORF_length.R -rw-r--r-- 9.0 KB
README.md -rw-r--r-- 28.0 KB
SARS-CoV-2_locate_genes.pl -rwxr-xr-x 13.0 KB
aligned_fasta2haplotypes.pl -rwxr-xr-x 10.9 KB
extract_fasta_by_sites.pl -rwxr-xr-x 8.0 KB
extract_positions_by_timepoint.py -rwxr-xr-x 9.1 KB
extract_seq_subset.py -rwxr-xr-x 2.3 KB
extract_seqs_by_location.py -rwxr-xr-x 3.8 KB
extract_seqs_by_timepoint.py -rwxr-xr-x 4.3 KB
extract_variable_columns_MSA.py -rwxr-xr-x 4.4 KB
extract_variable_columns_MSA_aa.py -rwxr-xr-x 4.4 KB
filter_VCF.py -rwxr-xr-x 10.4 KB
generate_random_protein.py -rwxr-xr-x 2.8 KB
generate_seqs_from_VCF.py -rwxr-xr-x 7.8 KB
riboseq_sliding_window.R -rw-r--r-- 8.1 KB
summarize_intrahost_by_site.py -rwxr-xr-x 26.0 KB
tally_epitope_coverage.py -rwxr-xr-x 3.1 KB
temporal_pi.R -rw-r--r-- 28.0 KB
translate_nt_seq_file.pl -rwxr-xr-x 6.1 KB

README.md

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