| 4493f82 | Chase W. Nelson | 18 September 2020, 06:41:19 UTC | Create .gitignore | 18 September 2020, 06:41:19 UTC |
| 6aba08a | Chase W. Nelson | 18 September 2020, 06:39:39 UTC | Update cover_image.png | 18 September 2020, 06:39:39 UTC |
| 36f496b | Chase W. Nelson | 18 September 2020, 06:34:11 UTC | Update cover_image.png | 18 September 2020, 06:34:11 UTC |
| c0c13bf | Chase W. Nelson | 18 September 2020, 06:27:31 UTC | Update cover image and acknowledgments | 18 September 2020, 06:27:31 UTC |
| 76498d4 | Chase W. Nelson | 18 September 2020, 06:23:35 UTC | Update README.md | 18 September 2020, 06:23:35 UTC |
| b24803c | Chase W. Nelson | 18 September 2020, 06:22:37 UTC | Update cover_image.png | 18 September 2020, 06:22:37 UTC |
| 86219d7 | Chase W. Nelson | 18 September 2020, 06:19:46 UTC | Update README.md | 18 September 2020, 06:19:46 UTC |
| c1b0226 | Chase W. Nelson | 18 September 2020, 06:18:38 UTC | Update cover_image.png | 18 September 2020, 06:18:38 UTC |
| ff99812 | Chase W. Nelson | 18 September 2020, 06:16:28 UTC | Update README.md | 18 September 2020, 06:16:28 UTC |
| 61e0c94 | Chase W. Nelson | 18 September 2020, 06:15:21 UTC | Update cover_image.png | 18 September 2020, 06:15:21 UTC |
| 4871ba6 | Chase W. Nelson | 18 September 2020, 06:12:38 UTC | Update README.md | 18 September 2020, 06:12:38 UTC |
| 0078bdb | Chase W. Nelson | 18 September 2020, 06:12:02 UTC | Cover image | 18 September 2020, 06:12:02 UTC |
| 4af19ff | Chase W. Nelson | 18 September 2020, 06:09:12 UTC | Add cover image, revise README | 18 September 2020, 06:09:12 UTC |
| ae6cc1d | Chase W. Nelson | 17 September 2020, 18:37:22 UTC | Initial commit: extract_positions_by_timepoint.py | 17 September 2020, 18:37:22 UTC |
| 08a4450 | Chase W. Nelson | 17 September 2020, 18:22:07 UTC | Initial commit: extract_seqs_by_location.py | 17 September 2020, 18:22:07 UTC |
| e1f1df1 | Chase W. Nelson | 17 September 2020, 10:53:34 UTC | Update README.md Reorder Figure 5 scripts | 17 September 2020, 10:53:34 UTC |
| 8e5ee4a | Chase W. Nelson | 17 September 2020, 10:51:14 UTC | Initial commit: temporal_pi.R | 17 September 2020, 10:51:14 UTC |
| 1fa17e5 | Chase W. Nelson | 17 September 2020, 10:13:37 UTC | Initial commit: extract_seqs_by_timepoint.py | 17 September 2020, 10:13:37 UTC |
| 23cd1f4 | Chase W. Nelson | 17 September 2020, 09:57:29 UTC | Initial commit: extract_variable_columns_MSA* and create data directory | 17 September 2020, 09:57:29 UTC |
| d6fadf3 | Chase W. Nelson | 17 September 2020, 09:19:58 UTC | Update README.md | 17 September 2020, 09:19:58 UTC |
| 1234efc | Chase W. Nelson | 17 September 2020, 09:16:27 UTC | Update README.md Added SNPGenie reference; formatted examples as full Shell code blocks | 17 September 2020, 09:16:27 UTC |
| 4fbf1d9 | Chase W. Nelson | 17 September 2020, 09:06:30 UTC | Initial commit: extract_fasta_by_sites.pl | 17 September 2020, 09:06:30 UTC |
| a3db4d6 | Chase W. Nelson | 17 September 2020, 08:46:17 UTC | Initial commit: aligned_fasta2haplotypes.pl | 17 September 2020, 08:46:17 UTC |
| 9ff78d9 | Chase W. Nelson | 17 September 2020, 08:27:01 UTC | Initial commit: translate_nt_seq_file.pl | 17 September 2020, 08:27:01 UTC |
| 8cc9472 | Chase W. Nelson | 17 September 2020, 08:13:27 UTC | Initial commit: summarize_intrahost_by_site.py | 17 September 2020, 08:13:27 UTC |
| 01a90c9 | Chase W. Nelson | 17 September 2020, 07:45:06 UTC | Initial commit: generate_seqs_from_VCF.py | 17 September 2020, 07:45:06 UTC |
| 185604d | Chase W. Nelson | 17 September 2020, 07:29:15 UTC | Initial commit: filter_vcf.py | 17 September 2020, 07:29:15 UTC |
| 6a831c2 | Chase W. Nelson | 17 September 2020, 06:25:46 UTC | Initial commit: extract_seq_subset.py | 17 September 2020, 06:25:46 UTC |
| 2b5b387 | Chase W. Nelson | 16 September 2020, 18:34:36 UTC | Initial commit: tally_epitope_coverage.py | 16 September 2020, 18:34:36 UTC |
| 9c66d6d | Chase W. Nelson | 16 September 2020, 18:23:23 UTC | Initial commit: generate_random_protein.py | 16 September 2020, 18:23:23 UTC |
| 3530901 | Chase W. Nelson | 16 September 2020, 18:07:35 UTC | Initial commit: supplementary data | 16 September 2020, 18:07:35 UTC |
| bdc9bd8 | Chase W. Nelson | 16 September 2020, 17:45:24 UTC | Initial commit: riboseq_sliding_window.R | 16 September 2020, 17:45:24 UTC |
| db2851a | Chase W. Nelson | 16 September 2020, 17:34:28 UTC | Initial commit of ORF_length.R Upload the script and its documentation, input, and output; add Schlub reference | 16 September 2020, 17:34:28 UTC |
| 02a7c5a | Chase W. Nelson | 16 September 2020, 10:27:36 UTC | Update README.md Removed superfluous punctuation | 16 September 2020, 10:27:36 UTC |
| f7e3b0d | Chase W. Nelson | 16 September 2020, 10:26:58 UTC | Update README.md Introduced TOC; began documenting scripts; added acknowledgments, citation, contact information, and reference sections | 16 September 2020, 10:26:58 UTC |
| 07c4dfa | Chase W. Nelson | 09 August 2020, 08:35:10 UTC | Initial commit | 09 August 2020, 08:35:10 UTC |
