| 44c0494 | Mikhail Kolmogorov | 09 October 2019, 17:18:44 UTC | merge master | 09 October 2019, 17:18:44 UTC |
| bd2fba7 | Mikhail Kolmogorov | 19 August 2019, 19:26:42 UTC | specifying networkx version 2.2 | 19 August 2019, 19:26:42 UTC |
| 2d93fe7 | Mikhail Kolmogorov | 08 April 2019, 22:51:35 UTC | Update README.md | 08 April 2019, 22:51:35 UTC |
| ec749b9 | Mikhail Kolmogorov | 08 April 2019, 22:38:40 UTC | deleted old unneeded scripts, fix #37 and #36 | 08 April 2019, 22:38:40 UTC |
| 5159e50 | Mikhail Kolmogorov | 08 April 2019, 22:34:47 UTC | fix #38 | 08 April 2019, 22:34:47 UTC |
| 54a864f | Mikhail Kolmogorov | 08 April 2019, 22:12:04 UTC | remove debug print | 08 April 2019, 22:12:04 UTC |
| a9d35f7 | Mikhail Kolmogorov | 08 April 2019, 21:24:40 UTC | setup file update | 08 April 2019, 21:24:40 UTC |
| 3b50427 | Mikhail Kolmogorov | 08 April 2019, 21:15:29 UTC | 2.2 | 08 April 2019, 21:15:29 UTC |
| 5292c29 | Mikhail Kolmogorov | 08 April 2019, 21:14:14 UTC | Newick module moved to ragout root, installation instructions update | 08 April 2019, 21:14:14 UTC |
| d30f5ce | Mikhail Kolmogorov | 08 April 2019, 19:55:07 UTC | Merge pull request #41 from latticetower/master Make everything work with networkx >= 2.2. | 08 April 2019, 19:55:07 UTC |
| b32c173 | Tatiana Malygina | 26 March 2019, 15:23:10 UTC | fix another permission error during travis-ci run | 26 March 2019, 15:23:10 UTC |
| c3bc4cc | Tatiana Malygina | 26 March 2019, 14:51:44 UTC | fix permission error during travis-ci run | 26 March 2019, 14:51:44 UTC |
| 9e0e4e5 | Tatiana Malygina | 26 March 2019, 14:46:01 UTC | add networkx dependency to travis-ci script | 26 March 2019, 14:46:01 UTC |
| ae9e1d1 | Tatiana Malygina | 26 March 2019, 14:26:56 UTC | remove redundant round brackets: edges() -> edges, nodes() -> nodes | 26 March 2019, 14:26:56 UTC |
| f4d4e22 | Tatiana Malygina | 25 March 2019, 14:08:08 UTC | fix AttributeError: 'set' object has no attribute 'items' | 25 March 2019, 14:08:08 UTC |
| e3a06ef | Tatiana Malygina | 25 March 2019, 13:19:40 UTC | fix TypeError: object of type 'dictionary-keyiterator' has no len() | 25 March 2019, 13:32:22 UTC |
| d49a5c4 | Tatiana Malygina | 25 March 2019, 13:09:21 UTC | replace edges_iter iterator with edges iterator in networkx graphs | 25 March 2019, 13:09:30 UTC |
| f865c3e | Tatiana Malygina | 25 March 2019, 13:04:12 UTC | remove networkx from lib dir | 25 March 2019, 13:04:12 UTC |
| 758500e | Mikhail Kolmogorov | 17 March 2019, 01:49:37 UTC | Merge branch 'devel' | 17 March 2019, 01:49:37 UTC |
| 1637fbf | Mikhail Kolmogorov | 16 March 2019, 00:05:00 UTC | Merge branch 'master' into devel | 16 March 2019, 00:05:00 UTC |
| fbffe40 | Mikhail Kolmogorov | 16 March 2019, 00:04:27 UTC | gff parser for maf2synteny | 16 March 2019, 00:04:27 UTC |
| c21e237 | Mikhail Kolmogorov | 31 October 2018, 01:34:43 UTC | Citations update | 31 October 2018, 01:34:43 UTC |
| 9b706fa | Mikhail Kolmogorov | 30 July 2018, 20:00:30 UTC | version update | 30 July 2018, 20:00:30 UTC |
| 2b3e6d5 | Mikhail Kolmogorov | 28 July 2018, 00:03:15 UTC | installation script + repository reorganisation | 28 July 2018, 00:03:15 UTC |
| a68b9db | Mikhail Kolmogorov | 27 July 2018, 01:48:58 UTC | bioconda badge | 27 July 2018, 01:48:58 UTC |
| 51ecff3 | Mikhail Kolmogorov | 27 July 2018, 01:39:47 UTC | docs update 2 | 27 July 2018, 01:39:47 UTC |
| 2300e45 | Mikhail Kolmogorov | 27 July 2018, 00:03:16 UTC | docs update | 27 July 2018, 00:03:16 UTC |
| 67a513a | Mikhail Kolmogorov | 26 July 2018, 23:06:30 UTC | a fix for sorting leaves by distance function | 26 July 2018, 23:06:30 UTC |
| da193f0 | Mikhail Kolmogorov | 26 July 2018, 20:31:49 UTC | updated newick packages source, now consistent with Bioconda version | 26 July 2018, 20:31:49 UTC |
| 119e6dc | Mikhail Kolmogorov | 18 July 2018, 20:14:16 UTC | some auxialary scipts changes | 18 July 2018, 20:14:16 UTC |
| 2c85472 | Mikhail Kolmogorov | 18 July 2018, 20:12:54 UTC | non-recursive dfs implementation + some logging improvements | 18 July 2018, 20:12:54 UTC |
| 626d759 | Mikhail Kolmogorov | 09 July 2018, 19:18:39 UTC | some changes | 09 July 2018, 19:18:39 UTC |
| 0cb7679 | Mikhail Kolmogorov | 08 July 2018, 04:15:09 UTC | custom block sizes | 08 July 2018, 04:15:09 UTC |
| f453881 | Mikhail Kolmogorov | 06 July 2018, 02:36:51 UTC | minimap verification script | 06 July 2018, 02:36:51 UTC |
| 71562fc | Mikhail Kolmogorov | 20 December 2016, 19:41:37 UTC | a fix for empty parent scaffold during merging | 20 December 2016, 19:41:37 UTC |
| 0543d6d | Mikhail Kolmogorov | 20 December 2016, 19:41:06 UTC | more informative message for empty permutation file | 20 December 2016, 19:41:06 UTC |
| 78e959d | Mikhail Kolmogorov | 03 December 2016, 01:15:25 UTC | a fix for genomes with dots | 03 December 2016, 01:15:25 UTC |
| 70de692 | Mikhail Kolmogorov | 28 November 2016, 21:11:23 UTC | centered logo | 28 November 2016, 21:11:23 UTC |
| 766b2ec | Mikhail Kolmogorov | 28 November 2016, 21:07:05 UTC | figure fix | 28 November 2016, 21:07:05 UTC |
| 8322e1d | Mikhail Kolmogorov | 28 November 2016, 21:05:37 UTC | logo | 28 November 2016, 21:05:37 UTC |
| a603106 | Mikhail Kolmogorov | 28 November 2016, 20:39:26 UTC | typo | 28 November 2016, 20:39:26 UTC |
| c9b5d38 | Mikhail Kolmogorov | 28 November 2016, 20:31:55 UTC | minor docs update | 28 November 2016, 20:31:55 UTC |
| 6eed507 | Mikhail Kolmogorov | 28 November 2016, 20:22:31 UTC | news | 28 November 2016, 20:22:31 UTC |
| a75e60e | Mikhail Kolmogorov | 28 November 2016, 20:19:24 UTC | typo | 28 November 2016, 20:19:24 UTC |
| 26d4aac | Mikhail Kolmogorov | 28 November 2016, 20:18:42 UTC | refinement disabled by default | 28 November 2016, 20:18:42 UTC |
| 4559980 | Mikhail Kolmogorov | 28 November 2016, 20:05:29 UTC | documentation update | 28 November 2016, 20:05:29 UTC |
| a7b6644 | Mikhail Kolmogorov | 14 November 2016, 19:10:13 UTC | error if no unique synteny blocks | 14 November 2016, 19:10:13 UTC |
| 83789c3 | Mikhail Kolmogorov | 09 November 2016, 23:35:46 UTC | Merge branch 'master' into devel | 09 November 2016, 23:35:46 UTC |
| 7ec4e12 | Mikhail Kolmogorov | 09 November 2016, 23:35:13 UTC | counting target-specific breakpoints, --inMemory option for hal removed | 09 November 2016, 23:35:13 UTC |
| ebd9205 | Mikhail Kolmogorov | 07 November 2016, 01:04:53 UTC | Update README.md | 07 November 2016, 01:04:53 UTC |
| 83f232f | Mikhail Kolmogorov | 19 August 2016, 23:50:55 UTC | Merge branch 'master' into devel | 19 August 2016, 23:50:55 UTC |
| 4bfbda6 | Max Shen | 19 August 2016, 19:44:37 UTC | fix negative gaps after assebly refinement | 19 August 2016, 19:44:37 UTC |
| 343c077 | Mikhail Kolmogorov | 09 August 2016, 01:25:37 UTC | oups | 09 August 2016, 01:25:37 UTC |
| 4674e03 | Mikhail Kolmogorov | 09 August 2016, 01:14:00 UTC | some refactoring and logging improvement | 09 August 2016, 01:14:00 UTC |
| 27e6ef3 | Mikhail Kolmogorov | 17 February 2016, 20:49:21 UTC | readme | 17 February 2016, 20:49:21 UTC |
| 3bbd6c9 | Mikhail Kolmogorov | 17 February 2016, 20:30:17 UTC | an option to disable chimera detection module + sorting output fasta | 17 February 2016, 20:30:17 UTC |
| b3bf289 | Mikhail Kolmogorov | 17 February 2016, 19:29:27 UTC | Merge branch 'master' into devel | 17 February 2016, 19:29:27 UTC |
| 024d279 | Mikhail Kolmogorov | 23 January 2016, 02:49:25 UTC | tests fixed | 23 January 2016, 02:49:25 UTC |
| 8283a58 | Mikhail Kolmogorov | 23 January 2016, 02:13:28 UTC | small improvement | 23 January 2016, 02:13:28 UTC |
| 73def46 | Mikhail Kolmogorov | 23 January 2016, 02:11:45 UTC | a small fix in verify-order | 23 January 2016, 02:11:45 UTC |
| b4ec394 | Mikhail Kolmogorov | 19 January 2016, 02:30:05 UTC | test fix | 19 January 2016, 02:30:05 UTC |
| f2e21cd | Mikhail Kolmogorov | 19 January 2016, 02:23:37 UTC | a small fix for verification script | 19 January 2016, 02:23:37 UTC |
| e1cc723 | Mikhail Kolmogorov | 18 November 2015, 03:26:21 UTC | maf2synteny update | 18 November 2015, 03:26:21 UTC |
| f95ea61 | Mikhail Kolmogorov | 12 November 2015, 22:16:22 UTC | Update README.md | 12 November 2015, 22:16:22 UTC |
| be8d780 | Mikhail Kolmogorov | 12 November 2015, 22:14:48 UTC | Update README.md | 12 November 2015, 22:14:48 UTC |
| 4441312 | Mikhail Kolmogorov | 07 November 2015, 02:40:53 UTC | chromosome renaming | 07 November 2015, 02:40:53 UTC |
| f0f5d82 | Mikhail Kolmogorov | 06 November 2015, 00:27:47 UTC | Merge branch 'devel' into chr_map | 06 November 2015, 00:27:47 UTC |
| 2c599db | Mikhail Kolmogorov | 05 November 2015, 22:52:41 UTC | gaps without upper limit | 05 November 2015, 22:52:41 UTC |
| 8d58eaf | Mikhail Kolmogorov | 04 November 2015, 22:33:06 UTC | minor refactoring | 04 November 2015, 22:33:06 UTC |
| 245b80c | Mikhail Kolmogorov | 04 November 2015, 04:10:23 UTC | Merge branch 'devel' into chr_map | 04 November 2015, 04:10:23 UTC |
| 246ddba | Mikhail Kolmogorov | 04 November 2015, 03:56:48 UTC | a fix for gap estimation | 04 November 2015, 03:56:48 UTC |
| 2f3b5c4 | Mikhail Kolmogorov | 02 November 2015, 19:38:37 UTC | joins from chromosome map | 02 November 2015, 19:38:37 UTC |
| eb471cf | Mikhail Kolmogorov | 01 November 2015, 02:51:52 UTC | a small improvement | 01 November 2015, 02:51:52 UTC |
| 7e640fe | Mikhail Kolmogorov | 01 November 2015, 02:41:09 UTC | chromosome map support | 01 November 2015, 02:41:09 UTC |
| 596d7c0 | Mikhail Kolmogorov | 01 November 2015, 02:40:24 UTC | some refactoring | 01 November 2015, 02:40:24 UTC |
| 1a3ae32 | Son Pham | 30 October 2015, 21:37:12 UTC | Update README.md | 30 October 2015, 21:37:12 UTC |
| f37511c | Mikhail Kolmogorov | 29 September 2015, 00:25:49 UTC | minor docs change | 29 September 2015, 00:25:49 UTC |
| 19d3ad4 | Mikhail Kolmogorov | 29 September 2015, 00:08:17 UTC | wrong date | 29 September 2015, 00:08:17 UTC |
| 2284233 | Mikhail Kolmogorov | 29 September 2015, 00:07:33 UTC | 1.2 | 29 September 2015, 00:07:33 UTC |
| bdcccea | Mikhail Kolmogorov | 28 September 2015, 23:46:25 UTC | Merge branch 'devel' | 28 September 2015, 23:46:25 UTC |
| fd9b35c | Mikhail Kolmogorov | 28 September 2015, 23:46:14 UTC | minor | 28 September 2015, 23:46:14 UTC |
| fa6f861 | Mikhail Kolmogorov | 28 September 2015, 23:31:21 UTC | Merge branch 'devel' of https://github.com/fenderglass/Ragout into devel | 28 September 2015, 23:31:21 UTC |
| 0a93120 | Mikhail Kolmogorov | 28 September 2015, 23:31:02 UTC | a fix for empty links information | 28 September 2015, 23:31:02 UTC |
| eb1692c | Mikhail Kolmogorov | 28 September 2015, 18:38:57 UTC | documantation improved | 28 September 2015, 18:38:57 UTC |
| 04bb6e1 | Mikhail Kolmogorov | 25 September 2015, 20:57:32 UTC | priority queue removed | 25 September 2015, 20:57:32 UTC |
| 2861ecb | Mikhail Kolmogorov | 25 September 2015, 20:44:56 UTC | a fix in rearrangement projection | 25 September 2015, 20:44:56 UTC |
| a3bd4e5 | Mikhail Kolmogorov | 25 September 2015, 01:00:30 UTC | output generator refactoring | 25 September 2015, 01:00:30 UTC |
| 1338e4b | Mikhail Kolmogorov | 24 September 2015, 02:04:50 UTC | partially unplaced contigs | 24 September 2015, 02:04:50 UTC |
| 581be6b | Mikhail Kolmogorov | 24 September 2015, 01:43:37 UTC | deterministic tree construction + fix in sorting by tree distance | 24 September 2015, 01:43:37 UTC |
| 545c417 | Mikhail Kolmogorov | 24 September 2015, 01:42:03 UTC | script renaming | 24 September 2015, 01:42:03 UTC |
| 061828f | Mikhail Kolmogorov | 12 September 2015, 14:18:04 UTC | chromosome names in support fields | 12 September 2015, 14:18:04 UTC |
| 03e5624 | Mikhail Kolmogorov | 12 September 2015, 12:15:21 UTC | ragout version in log | 12 September 2015, 12:15:21 UTC |
| be33c34 | Mikhail Kolmogorov | 09 September 2015, 16:55:11 UTC | small fix for merge algorithm | 09 September 2015, 16:55:11 UTC |
| 3c142fd | Mikhail Kolmogorov | 09 September 2015, 16:40:21 UTC | a fix for one-contig scaffolds | 09 September 2015, 16:40:21 UTC |
| 610f222 | Mikhail Kolmogorov | 25 August 2015, 17:46:15 UTC | beta version notice | 25 August 2015, 17:46:15 UTC |
| 11c2a94 | Mikhail Kolmogorov | 25 August 2015, 17:29:16 UTC | Merge branch 'devel' into path_cover Syncronizing branches | 25 August 2015, 17:29:16 UTC |
| 9780da0 | Mikhail Kolmogorov | 25 August 2015, 17:17:56 UTC | minor documentation change | 25 August 2015, 17:17:56 UTC |
| 3b9522a | Mikhail Kolmogorov | 20 August 2015, 11:49:14 UTC | fixed one-contig scaffolds | 20 August 2015, 11:49:14 UTC |
| 8a30ee7 | Mikhail Kolmogorov | 19 August 2015, 10:33:47 UTC | handling scaffolds from a single fragment | 19 August 2015, 10:33:47 UTC |
| 500b10e | Mikhail Kolmogorov | 18 August 2015, 10:55:51 UTC | documentation improved | 18 August 2015, 10:55:51 UTC |
