| 4504c1c | Walter Hannah | 24 June 2021, 22:58:56 UTC | Add namelist variable MMF_orientation_angle modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_defaults_eam.xml modified: components/eam/bld/namelist_files/namelist_definition.xml | 11 August 2021, 14:54:39 UTC |
| 9f5f442 | Jon Wolfe | 11 August 2021, 14:47:01 UTC | Merge branch 'jonbob/cpl/add-icebergs-to-budget' (PR #4402) Add separate lines for icebergs to the cpl heat and water budgets Adds coupler budget lines for "hberg" and "wberg", corresponding to heat from icebergs and water from icebergs, to support cryo configurations with data icebergs (DIB). [BFB] | 11 August 2021, 14:47:01 UTC |
| 135a922 | Azamat Mametjanov | 11 August 2021, 01:55:58 UTC | Merge branch 'azamat/theta/add-custom-perl-install' (PR #4446) Add a Perl install on Theta and fix MCT builds with --host=cray configure. Also, add ne30-WC PE-layouts: - XSmall @ 8 nodes of debug queue : 0.8 sypd - Medium @ 128 nodes of default queue : 3.8 sypd Fixes E3SM-Project/E3SM#4367 [BFB] | 11 August 2021, 01:55:58 UTC |
| 2660ae7 | Azamat Mametjanov | 11 August 2021, 01:39:32 UTC | Add ne30-WC PE-layouts for Theta XSmall @ 8 nodes of debug queue : 0.8 sypd Medium @ 128 nodes of default queue : 3.8 sypd | 11 August 2021, 01:39:32 UTC |
| c8cbad0 | Oksana Guba | 10 August 2021, 22:40:01 UTC | Merge branch 'origin/oksanaguba/eam/add-output' into master (PR #4343) Added w_i, z3_i, mu_i, pnh to dyn grid output. [bfb] | 10 August 2021, 22:40:01 UTC |
| ea506e7 | Azamat Mametjanov | 10 August 2021, 21:13:54 UTC | Merge branch 'azamat/chrysalis/pat-adjust-med-pelayout' (PR #4450) Update ne30-WC PE-layouts on Chrysalis: - XSmall @14 nodes : 7.9 sypd - Small @28 nodes : 14.7 sypd - Medium @53 nodes : 26.4 sypd - ML @71 nodes : 31.5 sypd [BFB] - except for OCN & ICE diagnostics in PET & ERP tests | 10 August 2021, 21:13:54 UTC |
| d53497e | Benjamin R. Hillman | 10 August 2021, 18:44:54 UTC | Merge branch 'whannah/mmf/fix-erp-test' (#4344) This adds a new test mod "eam-mmf_max_subcycle" that allows ERP tests to pass and updates MMF tests in integration suite. Fixes issue #3477 [BFB] except for modified test names | 10 August 2021, 18:44:54 UTC |
| b33a214 | Peter Schwartz | 10 August 2021, 16:30:19 UTC | Merge branch 'evasinha/lnd/test_per_crop'(PR #4448) Added a new test test for perennial crops. | 10 August 2021, 16:30:19 UTC |
| 250bd5d | Robert Jacob | 09 August 2021, 22:37:23 UTC | Merge branch 'lukaszlacinski/lukaszlacinski/circleci' (PR #4433) Add NERSC HTTPS server with E3SM container for CircleCI test and use Petrel HTTPS as a backup Based on the latest experience with the power outage at Argonne National Lab, this PR adds the NERSC HTTPS server as the main server that keeps the E3SM Singularity container. The CircleCI test script will fall back to the ANL ALCF Petrel HTTPS server if wget fails to download the container from the NERSC HTTPS server. The download time from the NERSC server seems to be 3 times smaller than from the ANL Petrel HTTPS server. Also remove old travis CI config files. | 09 August 2021, 22:37:23 UTC |
| db9366f | Azamat Mametjanov | 09 August 2021, 17:14:34 UTC | Update SYPD results in PE-layout comments | 09 August 2021, 17:14:34 UTC |
| 62efbf6 | Walter Hannah | 09 August 2021, 15:05:31 UTC | revert MMFOMP test from ERP to ERS | 09 August 2021, 15:05:31 UTC |
| c308b54 | Azamat Mametjanov | 08 August 2021, 04:17:42 UTC | Update M80 to 71-node ML pelayout | 08 August 2021, 04:17:42 UTC |
| 8f7d231 | Azamat Mametjanov | 07 August 2021, 08:34:02 UTC | Update ne30-WC XS,S,M80 pelayouts on Chrysalis | 07 August 2021, 08:34:02 UTC |
| 9e5941c | Azamat Mametjanov | 06 August 2021, 21:40:36 UTC | Configure MCT with --host=cray Prior --host=Linux was removed in CIME PR E3SM-Project/E3SM#4389 | 06 August 2021, 21:40:36 UTC |
| 87c68e6 | Azamat Mametjanov | 06 August 2021, 20:31:13 UTC | Update ne30-WC PE-layouts on Chrysalis | 06 August 2021, 20:31:13 UTC |
| 9dde4dd | Benjamin R. Hillman | 06 August 2021, 16:11:45 UTC | Merge branch 'whannah/atm/remove-swrad_off' (#4430) This removes the swrad_off and lwrad_off flags for disabling radiation in SCM simualtions in favor of using iradsw=0 and iradlw=0 for disabling radiation. [BFB] | 06 August 2021, 16:11:45 UTC |
| e7bcda6 | Benjamin R. Hillman | 06 August 2021, 16:08:12 UTC | Merge branch 'whannah/mmf/fix-default-time-step' (#4432) Change the default atmosphere time step of 20 min (ATM_NCPL=72) to apply to all MMF cases on any grid. [BFB] | 06 August 2021, 16:08:12 UTC |
| 1d678f3 | Eva Sinha | 06 August 2021, 16:03:26 UTC | Added new test for perennial crops | 06 August 2021, 16:03:26 UTC |
| d76a548 | Walter Hannah | 06 August 2021, 15:30:30 UTC | Revert select tests to use single thread | 06 August 2021, 15:30:30 UTC |
| 16a1114 | Oksana Guba | 06 August 2021, 15:16:30 UTC | Merge branch 'origin/oksanaguba/homme/bubble' into master (PR #4250) Added a planar bubble test, dry or Kessler or RJ physics. Reorganized init constants of planar homme. Added 2 bubble tests, dry and Kessler, to nightlies. [bfb] but new baselines for homme. | 06 August 2021, 15:16:30 UTC |
| ae6c918 | Azamat Mametjanov | 06 August 2021, 00:15:23 UTC | Add a Perl install on Theta | 06 August 2021, 00:15:23 UTC |
| 98e9b51 | Walter Hannah | 05 August 2021, 22:27:15 UTC | remove temporary test suite | 05 August 2021, 22:27:15 UTC |
| 9551cab | Oksana Guba | 05 August 2021, 20:42:53 UTC | fixing names of output files | 05 August 2021, 20:42:53 UTC |
| 1914d27 | Jon Wolfe | 05 August 2021, 17:13:31 UTC | Add back missing line, remove unnecessary checks for indices | 05 August 2021, 17:13:31 UTC |
| e5371d1 | Jon Wolfe | 13 July 2021, 21:45:20 UTC | Add separate lines for icebergs to the cpl heat and water budgets | 05 August 2021, 17:00:10 UTC |
| 5fc4a7e | Peter Schwartz | 05 August 2021, 16:11:41 UTC | Merge branch 'evasinha/lnd/perennial-crops' (PR #4379) Adds perennial crop model and expands crop types to 36. New parameter file was generated for 36 CFT's and for parameters for perennial crops. [BFB] except for crop tests. | 05 August 2021, 16:11:41 UTC |
| 4e0ff9a | Eva Sinha | 04 August 2021, 21:46:48 UTC | Fixes time step dt in PerennialCropPhenology | 04 August 2021, 21:46:48 UTC |
| 3296d68 | Walter Hannah | 23 June 2021, 23:12:34 UTC | Remove task/thread spcification for MMF tests modified: cime_config/tests.py | 04 August 2021, 19:54:32 UTC |
| 930db7d | Walter Hannah | 16 June 2021, 21:29:28 UTC | change mmf_max_subcycle to mmf_fixed_subcycle modified: cime_config/tests.py renamed: components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_max_subcycle/shell_commands -> components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_fixed_subcycle/shell_commands modified: components/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/sam/kurant.F90 modified: components/eam/src/physics/crm/samomp/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/samomp/kurant.F90 modified: components/eam/src/physics/crm/samxx/kurant.cpp modified: components/eam/src/physics/crm/samxx/microphysics.cpp | 04 August 2021, 19:53:48 UTC |
| ba2ebe3 | Walter Hannah | 15 June 2021, 22:43:48 UTC | Change new testmod to mmf_max_subcycle modified: components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_max_subcycle/shell_commands modified: components/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/sam/kurant.F90 modified: components/eam/src/physics/crm/samomp/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/samomp/kurant.F90 modified: components/eam/src/physics/crm/samxx/kurant.cpp modified: components/eam/src/physics/crm/samxx/microphysics.cpp | 04 August 2021, 19:53:06 UTC |
| a74a3e0 | Walter Hannah | 15 June 2021, 21:41:36 UTC | add semicolon modified: components/eam/src/physics/crm/samxx/kurant.cpp | 04 August 2021, 19:53:06 UTC |
| c9ff6d3 | Walter Hannah | 15 June 2021, 19:50:41 UTC | modify integration tests modified: cime_config/tests.py renamed: components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_exact_restart/shell_commands -> components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_max_subcycle/shell_commands | 04 August 2021, 19:53:01 UTC |
| 00fa2e5 | Walter Hannah | 15 June 2021, 19:48:04 UTC | Add new line modified: components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_exact_restart/shell_commands | 04 August 2021, 19:51:41 UTC |
| 88b520b | Walter Hannah | 15 June 2021, 19:47:24 UTC | Add semicolon modified: components/eam/src/physics/crm/samxx/microphysics.cpp | 04 August 2021, 19:51:41 UTC |
| 621f7ca | Walter Hannah | 14 June 2021, 22:13:04 UTC | Add SAMOMP and SAMXX support for mmf_exact_restart modified: components/eam/src/physics/crm/samomp/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/samomp/kurant.F90 modified: components/eam/src/physics/crm/samxx/kurant.cpp modified: components/eam/src/physics/crm/samxx/microphysics.cpp | 04 August 2021, 19:51:41 UTC |
| 0de2835 | Walter Hannah | 14 June 2021, 22:07:12 UTC | Add eam-mmf_exact_restart test mod to fix ERP new file: components/eam/cime_config/testdefs/testmods_dirs/eam/mmf_exact_restart/shell_commands modified: components/eam/src/physics/crm/sam/MICRO_SAM1MOM/microphysics.F90 modified: components/eam/src/physics/crm/sam/kurant.F90 | 04 August 2021, 19:51:41 UTC |
| 1fbf660 | Oksana Guba | 04 August 2021, 17:22:56 UTC | fix nls for more ranks | 04 August 2021, 17:22:56 UTC |
| 7adb24e | Jon Wolfe | 04 August 2021, 14:48:04 UTC | Merge branch 'mark-petersen/ocean/si_modify' (PR #4354) Update ocean semi-implicit barotropic mode solver Modifies codes for the semi-implicit barotropic mode solver, including: * Significant cleanup * Change of the linear iterative solver algorithm * Change of scalar and array names used in the semi-implicit solver * Addition of the 'config_n_btr_si_large_iter' flag * Removal of the 'config_n_btr_si_outer_iter' flag * More detailed notes on the semi-implicit solver Though this does change answers from the previous version of this solver, by default this solver is not used by E3SM so the results are BFB [NML] [BFB] | 04 August 2021, 14:48:04 UTC |
| 7d0793c | James Foucar | 03 August 2021, 22:14:35 UTC | Merge branch 'jgfouca/cime_update_2021_07_28' into master (PR #4431) to c6f489356fd385c465eec285b0321c09c12b2e97 Fixes: 1) check the size of read only xml files for 0 size 2) Fix e3sm archiving, GIT files, preview_run 3) Prepend the casename to mpas component restart file search in st_archive 4) Fix replay archive when replay.sh is not +w Fixes #4424 [BFB] * jgfouca/cime_update_2021_07_28: Prepend casename to mpas restart filenames CIME Update | 03 August 2021, 22:14:35 UTC |
| 0cfc09f | Jason Sarich | 03 August 2021, 19:17:05 UTC | Merge branch 'mkstratos/machines/add_anvil_html_dir' (PR #4399) Add CIME HTML dir on Anvil for atm non-bfb tests This adds the CIME_URL_ROOT and CIME_HTML_ROOT for Anvil, which is used by CIME in the non-bit for bit tests to make evv4esm results available on a public facing webpage. This change places the results in the test user's sub-directory as a top-level sub-directory in the E3SM project (e.g. https://web.lcrc.anl.gov/public/e3sm/e3smtest for the "e3smtest" user). [BFB] | 03 August 2021, 19:17:05 UTC |
| 0e9be9d | lukaszlacinski | 03 August 2021, 18:39:31 UTC | Remove Travis CI test scripts | 03 August 2021, 18:39:31 UTC |
| 8d19fe3 | Oksana Guba | 03 August 2021, 15:23:54 UTC | Merge 'origin/azamat/homme/update-anvil-cmake-machine-files' into master (PR #4435) Update HOMME machine config for Anvil [BFB] | 03 August 2021, 15:23:54 UTC |
| b2b22cd | Jon Wolfe | 02 August 2021, 20:26:32 UTC | Merge branch 'jonbob/cpl/budget-add-irrig' (PR #4396) Add term to cpl budget for irrigation passed between lnd and rof Adds a new line to the coupler water budget to track the water exchange between lnd and rof due to irrigation, which corresponds to the field Flrr_supply. This supports new water features added to ELM and already tracked in its internal budget. For typical WaterCycle runs, this line will be all zeros. [BFB] | 02 August 2021, 20:26:32 UTC |
| de581fd | Jon Wolfe | 29 July 2021, 21:00:48 UTC | Prepend casename to mpas restart filenames | 02 August 2021, 18:10:27 UTC |
| d95adb1 | Wuyin Lin | 02 August 2021, 14:48:56 UTC | Merge branch 'origin/wlin/atm/nmlupdate_oxid_prescribed_ozone' (PR #4436) Remove unused nml section prescribed_ozone and use consistent oxid file Prescribed_ozone_nl section is not needed for E3SMv2 production compsets but still appear in some of them. There are two versions of prescribed oxidant files for aerosol chemistry among the V2 comppsets, but they are converted from the same netcdf4 source file. Use_case files are updated to consistently use the one that records the detailed history of the conversion. [BFB] No impact on simulation results. NML diffs expected for 1850, 1950 and 2010 WCYCL and F compsets | 02 August 2021, 14:48:56 UTC |
| 2829634 | Wuyin Lin | 31 July 2021, 04:17:20 UTC | Remove unused nml section prescribed_ozone and use consistent oxid file Prescribed_ozone_nl section is not needed for E3SMv2 production compsets but still appear in some of them. There are two versions of prescribed oxidant files for aerosol chemistry among the V2 comppsets, but they are converted from the same netcdf4 source file. Use_case files are updated to consistently use the one that records the detailed history of the conversion. [BFB] No impact on simulation results. NML diffs expected for 1850, 1950 and 2010 WCYCL and F compsets | 31 July 2021, 04:17:20 UTC |
| 54dc9f5 | Azamat Mametjanov | 30 July 2021, 19:03:52 UTC | Update HOMME machine config for Anvil | 30 July 2021, 19:03:52 UTC |
| bc329d0 | Eva Sinha | 30 July 2021, 18:24:54 UTC | Modified pftvarcon allocation to be conditional | 30 July 2021, 18:24:54 UTC |
| 336b521 | Azamat Mametjanov | 30 July 2021, 01:48:40 UTC | Merge branch 'azamat/anvil/add-openmpi-modules' (PR #4403) Add OpenMPI modules for Intel on Anvil. Also add IntelMPI and OpenMPI modules for GNU on Anvil. [BFB] | 30 July 2021, 01:48:40 UTC |
| cdbc086 | Jon Wolfe | 29 July 2021, 20:52:05 UTC | Remove checks for index of Flrr_supply, which is always defined | 29 July 2021, 20:52:05 UTC |
| b877276 | Jon Wolfe | 29 July 2021, 20:42:51 UTC | Remove cesm-specific irrigation fields, check for e3sm around others | 29 July 2021, 20:42:51 UTC |
| ed0e533 | lukaszlacinski | 29 July 2021, 20:11:12 UTC | Add NERSC HTTPS server with E3SM container for CircleCI test and use Petrel HTTPS as a backup | 29 July 2021, 20:11:12 UTC |
| 7fdf4a0 | Walter Hannah | 29 July 2021, 20:08:00 UTC | change default MMF time step modified: driver-mct/cime_config/config_component_e3sm.xml | 29 July 2021, 20:08:00 UTC |
| 625eb0f | Benjamin R. Hillman | 28 July 2021, 19:46:20 UTC | Merge branch 'whannah/mm/fix-samxx-esmt' (#4342) Add a missing turbulent diffusion calculation for ESMT scalars in SAM++ [BFB] (except for MMFXX with ESMT enabled) | 28 July 2021, 19:46:20 UTC |
| 4bb9996 | James Foucar | 28 July 2021, 18:57:19 UTC | CIME Update to c6f489356fd385c465eec285b0321c09c12b2e97 Fixes: 1) check the size of read only xml files for 0 size 2) Fix e3sm archiving, GIT files, preview_run 3) Prepend the casename to mpas component restart file search in st_archive 4) Fix replay archive when replay.sh is not +w [BFB] | 28 July 2021, 18:57:19 UTC |
| e30f662 | Peter Schwartz | 28 July 2021, 15:18:04 UTC | Merge branch 'azamat/ibm/fix-elm-builds'(PR #4427) ELM updates for IBM compiler builds on Summit. Addresses #4420 [BFB] | 28 July 2021, 15:18:04 UTC |
| cec4666 | Walter Hannah | 27 July 2021, 20:49:52 UTC | fix infinite loop issue in radiation_nextsw_cday modified: components/eam/src/physics/crm/rrtmg/radiation.F90 modified: components/eam/src/physics/crm/rrtmgp/radiation.F90 modified: components/eam/src/physics/rrtmg/radiation.F90 modified: components/eam/src/physics/rrtmgp/radiation.F90 | 27 July 2021, 20:49:52 UTC |
| 927978a | Walter Hannah | 27 July 2021, 20:47:57 UTC | modify radiation_do to support irad=0 modified: components/eam/src/physics/crm/rrtmg/radiation.F90 modified: components/eam/src/physics/crm/rrtmgp/radiation.F90 modified: components/eam/src/physics/rrtmg/radiation.F90 modified: components/eam/src/physics/rrtmgp/radiation.F90 | 27 July 2021, 20:47:57 UTC |
| 4970bc5 | Walter Hannah | 27 July 2021, 20:44:56 UTC | remove rad flags from radation routines modified: components/eam/src/physics/crm/rrtmg/radiation.F90 modified: components/eam/src/physics/crm/rrtmgp/radiation.F90 modified: components/eam/src/physics/rrtmg/radiation.F90 modified: components/eam/src/physics/rrtmgp/radiation.F90 | 27 July 2021, 20:44:56 UTC |
| 5080ad3 | Walter Hannah | 27 July 2021, 20:42:23 UTC | remove rad flags from namelist_definition modified: components/eam/bld/namelist_files/namelist_definition.xml | 27 July 2021, 20:42:23 UTC |
| 6ec12f5 | Walter Hannah | 27 July 2021, 20:41:55 UTC | remove rad flags from runtime_opts modified: components/eam/src/control/runtime_opts.F90 | 27 July 2021, 20:41:55 UTC |
| 97f9c25 | Walter Hannah | 27 July 2021, 20:40:40 UTC | remove rad flags from scammod modified: components/eam/src/control/scamMod.F90 | 27 July 2021, 20:40:40 UTC |
| 62d7f3b | Jon Wolfe | 27 July 2021, 15:32:46 UTC | Merge branch 'akturner/seaice/mpas_seaice_paper_figs' (PR #4414) Improvements to sea ice standalone test cases Fixes model location in scripts and improves output figures Fixes #4413 [BFB] | 27 July 2021, 15:32:46 UTC |
| 2e2a8bd | Walter Hannah | 26 July 2021, 20:47:31 UTC | Fix ESMT sgs modified: components/eam/src/physics/crm/samxx/sgs.cpp | 26 July 2021, 20:47:31 UTC |
| c65d903 | Benjamin R. Hillman | 26 July 2021, 18:28:02 UTC | Merge branch 'whannah/mmf/remove-old-sp-compsets' (#4383) This removes the "SP" compsets copied from the original ECP fork, which are no longer needed. [BFB] | 26 July 2021, 18:28:02 UTC |
| 194a46d | Benjamin R. Hillman | 26 July 2021, 18:22:50 UTC | Merge branch 'mrnorman/mmf/update-yakl-fix-ssh-submodules' (#4370) - Update YAKL CMake with new conveniences (YAKL will handle source file flags and other things through a macro now) - Improve documentation of YAKL and SAMXX integration in CMake files - Add GPU YAKL_DEBUG - Improve YAKL header filenames to avoid future name clashes - Improve YAKL internal macro define names to be more readable - Change YAKL CMake variables to avoid future clashes with other CMake packages New wiki documentation on the process of integrating SAM++ and YAKL into E3SM, CIME, and CMake is below: https://github.com/E3SM-Project/E3SM/wiki/YAKL-and-SAMXX-CIME-and-CMake-Integration-Notes | 26 July 2021, 18:22:50 UTC |
| 20aeba1 | hyungyukang | 26 July 2021, 13:43:10 UTC | Revise comments in si_init routine | 26 July 2021, 16:30:59 UTC |
| 83ded89 | hyungyukang | 12 July 2021, 21:51:55 UTC | Add if condition for destroying subcycleFields | 26 July 2021, 16:30:59 UTC |
| 189fdd0 | hyungyukang | 12 July 2021, 13:44:14 UTC | Change all SI flags from 'semi_implicit' to 'split_implicit' | 26 July 2021, 16:30:59 UTC |
| 7934ade | hyungyukang | 12 July 2021, 02:01:48 UTC | Fix bugs and add OpenMP directives | 26 July 2021, 16:30:58 UTC |
| 11ff896 | mark-petersen | 23 June 2021, 16:26:13 UTC | Update namelist for config_n_btr_si_outer_iter | 26 July 2021, 16:30:58 UTC |
| a273527 | Mark Petersen | 23 June 2021, 15:04:37 UTC | Resolve conflicts after merge. | 26 July 2021, 16:30:58 UTC |
| e8c3cc5 | Mark Petersen | 23 June 2021, 14:58:17 UTC | This PR modifies codes for the semi-implicit barotropic mode solver. Here are main changes I've made for this PR compared to the former version. - Significant cleanup as done in #781 - Change of the linear iterative solver algorithm (reducing global and local communications) - from the preconditioned pipelined BiCGStab to the single-reduction BiCGStab - removal of local halo exchanges before preconditioning - Change of scalar and array names used in the semi-implicit solver - from 'CG***' to 'SI***' - Addition of the 'config_n_btr_si_large_iter' flag - The large barotropic system iteration loop is added. - Any positive integer. Default is 1, but less than 2. - Higher value of the 'config_n_btr_si_large_iter' can make the model more stable and accurate, but runtime for advance of the barotropic system will increase. - Other changes - removal of the 'config_n_btr_si_outer_iter' flag - Instead, the outer iteration tolerance (1.0e-2) is hard coded. - more detailed notes on the semi-implicit solver - small bugs fix Note: - This PR is not bit-for-bit compared to the previous semi-implicit code. - By setting `config_btr_si_partition_match_mode = .true.`, this PR has the same pass/fail results of the nightly test suite with the split-explicit code. - For `config_btr_si_partition_match_mode = .false.` (default), partition tests fail, which is expected for the semi-implicit barotropic mode solver. | 26 July 2021, 16:30:58 UTC |
| 357709e | James Foucar | 23 July 2021, 23:10:32 UTC | Merge branch 'jgfouca/cime_update_2021_07_22' into master (PR #4425) to 231c8e783d9df1896f7ac0bdd1f31e74f496bdac Changes: 1) Fails if xmllint not found in path. 2) jenkins_generic_job: no reason for this magic config setting Just have baselines off by default. It's not hard to turn them on Fixes: 1) Ensure Cmake is available for wait_for_tests [BFB] * jgfouca/cime_update_2021_07_22: Another CIME submodule update | 23 July 2021, 23:10:32 UTC |
| 20db28f | Azamat Mametjanov | 23 July 2021, 21:10:17 UTC | ELM updates for IBM compiler builds on Summit | 23 July 2021, 21:10:17 UTC |
| 94af4d7 | Oksana Guba | 23 July 2021, 20:17:53 UTC | add a variable for toy chem | 23 July 2021, 20:17:53 UTC |
| 751a5ed | James Foucar | 22 July 2021, 18:23:00 UTC | Another CIME submodule update to 231c8e783d9df1896f7ac0bdd1f31e74f496bdac Changes: 1) Fails if xmllint not found in path. 2) jenkins_generic_job: no reason for this magic config setting Just have baselines off by default. It's not hard to turn them on Fixes: 1) Ensure Cmake is available for wait_for_tests [BFB] | 22 July 2021, 18:23:00 UTC |
| e3472d2 | Wuyin Lin | 22 July 2021, 14:39:12 UTC | Merge branch 'wlin/northamericarrm_update_defaults' (PR #4422) Update v2 default nml parameters for northamericarrm ATM_NCPL=48 and the following parameters for MPASSI are made default for the northamericarrm grid. config_use_high_frequency_coupling = true config_boundary_layer_iteration_number = 10 [BFB] non-BFB when using atm grid northamericax4v1 and/or ocn/ice grid WC14to60E2r3 | 22 July 2021, 14:39:12 UTC |
| 99a4856 | Min Xu | 21 July 2021, 16:29:07 UTC | Merge branch '/azamat/summit/fix-thread-pinning' (PR #4410) Fix OpenMP thread pinning with SMT on Summit When multi-threading with OpenMP, MPI tasks need to be given NTHRDS number of hwthreads. [BFB] | 21 July 2021, 16:29:07 UTC |
| 98b89a3 | noel | 21 July 2021, 15:11:02 UTC | Merge branch E3SM-Project/ndk/machinefiles/cori-1node-default-layout2 (PR #4408) For Cori, change the default layout for any case using only 1 node to use full node | 21 July 2021, 15:11:02 UTC |
| 2d067e4 | Wuyin Lin | 21 July 2021, 14:14:15 UTC | Update v2 default nml parameters for northamericarrm ATM_NCPL=48 and the following parameters for MPASSI are made default for the northamericarrm grid. config_use_high_frequency_coupling = true config_boundary_layer_iteration_number = 10 [BFB] non-BFB when using atm grid northamericax4v1 and/or ocn/ice grid WC14to60E2r3 | 21 July 2021, 14:14:15 UTC |
| 1d66ec3 | Jon Wolfe | 19 July 2021, 20:43:02 UTC | Merge branch 'maltrud/ocean/fix_CO2flux_export' (PR #4409) Only send ocean CO2 flux to cpl if atm is expecting it Make sure that index_o2x_Faoo_fco2_ocn has a non-zero value before loading the co2 surface flux for export. Memory corruption can occur without this fix. Fixes #4394 [BFB] | 19 July 2021, 20:43:02 UTC |
| b55ec0f | Jon Wolfe | 19 July 2021, 20:36:44 UTC | Merge branch 'xylar/mpas-ocean/add-min-level-to-global-stats-am' (PR #4387) Add min level indices to global stats This merge adds minLevelCell, minLevelEdgeTop and minLevelVertexBot to the globalStats analysis member so that inactive top layers are excluded from stats. [BFB] | 19 July 2021, 20:36:44 UTC |
| 5394436 | Oksana Guba | 19 July 2021, 16:53:06 UTC | Merge branch 'ambrad/ambrad/homme/cpp14' into master (PR #4416) We need to request C++14 support instead of C++11. This should fix the sandiatoss3 standalone Homme nightlies. [BFB] for CIME tests; nonBFB for Homme standalone tests | 19 July 2021, 16:53:06 UTC |
| 7dc9cd9 | Andrew M. Bradley | 17 July 2021, 22:11:25 UTC | Fix Homme standalone build after Kokkos update. We need to request C++14 support instead of C++11. | 17 July 2021, 22:29:08 UTC |
| f1b9785 | Azamat Mametjanov | 16 July 2021, 22:11:41 UTC | Propagate OpenMP env-vars to jsrun Explicitly propagate OMP env-vars to avoid oversubscription and OOM. | 16 July 2021, 22:11:41 UTC |
| ab6992f | Oksana Guba | 16 July 2021, 21:51:02 UTC | Merge 'AMB/ambrad/homme/cedr-chrysalis-threaded-fix' into master (PR #4361) It was reported that some standalone Homme SL transport tests were crashing with multiple threads. The failure is an inconsistent shared-pointer count in a Kokkos array. This error has not appeared on, e.g., Cori-KNL, despite always running threaded there. In addition, I'm not seeing a bug in the SL C++ code. But I do know how to avoid the problem, and this commit does that. [BFB] | 16 July 2021, 21:51:02 UTC |
| 0bbde07 | Azamat Mametjanov | 16 July 2021, 20:15:43 UTC | Apply Summit's updates to Ascent | 16 July 2021, 20:15:43 UTC |
| c294526 | Adrian K. Turner | 16 July 2021, 19:25:58 UTC | Improvements to standalone test cases Fixed model location in scripts Improved output figures | 16 July 2021, 19:25:58 UTC |
| caf8023 | Azamat Mametjanov | 16 July 2021, 18:42:30 UTC | Simplify how we set SMT mode for a Summit job | 16 July 2021, 18:42:30 UTC |
| f019c5a | Jon Wolfe | 16 July 2021, 14:38:24 UTC | Merge branch 'xylar/mpas-framework/pio2-build-fix-osx' (PR #4395) Fix standalone MPAS builds under OSX This merge switches to the flag for including the standard c++ library (needed by SCORPIO) under OSX to -lc++, not -lstdc++. Note that these changes only impact MPAS standalone builds and should not affect E3SM. OSX is also the most common platform where we use gfortran and clang compilers. OpenMPI on OSX does not support flags -cc=clang and -cxx=clang++. These flags also do not seem to be needed. [BFB] | 16 July 2021, 14:38:24 UTC |
| 0ccd673 | Azamat Mametjanov | 16 July 2021, 01:17:05 UTC | Fix OpenMP thread pinning with SMT on Summit | 16 July 2021, 01:17:05 UTC |
| 9116e5d | Mathew Maltrud | 15 July 2021, 19:18:32 UTC | Only send ocean CO2 flux to cpl if atm is expecting it | 15 July 2021, 19:18:32 UTC |
| 485cace | James Foucar | 15 July 2021, 18:35:02 UTC | Merge branch 'jasonb5/fix_desp_buildnml' (PR #4388) Fixes desp buildnml to use NAMELIST_DEFINITION_FILE variable buildnml for the desp component was using a path that was locally constructed rather than using CIME config files. This fixes buildnml to use the NAMELIST_DEFINITION_FILE variable to get the path, this is inline with other components. [BFB] * jasonb5/fix_desp_buildnml: Removes breakpoint Fixes desp buildnml to use NAMELIST_DEFINITION_FILE variable | 15 July 2021, 18:35:02 UTC |
| c07e3e3 | James Foucar | 15 July 2021, 18:31:57 UTC | Merge branch 'jgfouca/update_sandiatoss3_gnu' (PR #4405) Update sandiatoss3 environment: 1) Need newer GCC libstdc++ for kokkos 2) Do not load too-old python in modules [BFB] * origin/jgfouca/update_sandiatoss3_gnu: Remove old python load for sandiatoss3 Update Sandiatoss3 gcc compiler | 15 July 2021, 18:31:57 UTC |
| f0e55e9 | James Foucar | 15 July 2021, 18:23:17 UTC | Remove old python load for sandiatoss3 Caused case.submit to fail with a too-old-python error. | 15 July 2021, 18:23:21 UTC |
| d534a00 | noel | 15 July 2021, 18:06:01 UTC | For Cori, change the default layout for any case using only 1 node to be a full node -- for cori-knl, use 64 MPI's for cori-haswell, use 32 MPI's Fixes #4406 bfb | 15 July 2021, 18:06:01 UTC |
| fb572e6 | Jon Wolfe | 15 July 2021, 16:05:43 UTC | Merge branch 'jonbob/ocean/fix-iceberg-temp-flux' (PR #4401) Fix incorrectly named iceberg term in totalFreshWaterTemperatureFlux Replaces an incorrectly named iceberg term in the calculation of totalFreshWaterTemperatureFlux in mpas-ocean. This term was causing unrealistic heating in the southern hemisphere for cryo configurations with data icebergs on. [non-BFB] only for cryo configurations with DIB on | 15 July 2021, 16:05:43 UTC |
| 8f79842 | Jon Wolfe | 15 July 2021, 16:02:20 UTC | Merge branch 'akturner/seaice/testcase_bugs' (PR #4382) Fix several bugs in sea ice standalone test cases Fixed bug in initial condition creation scripts for square operator test cases. Fixes #4381 [BFB] | 15 July 2021, 16:02:20 UTC |
| 9adaadc | Peter Schwartz | 15 July 2021, 14:04:01 UTC | Merge branch 'bishtgautam/lnd/mabrunke-varsoil-in-ZD2009-with-BGC-rebased' (PR #4278) Adds consistency to run variable soil thickness with CTC, fixes a few remaining bugs in variable soil thickness. [BFB] | 15 July 2021, 14:04:01 UTC |
