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Revision 469689991e7dbce2be4c4f618584304d91841c49 authored by Chase W. Nelson on 01 October 2020, 17:39:04 UTC, committed by Chase W. Nelson on 01 October 2020, 17:39:04 UTC 
Updated README with eLife citation
1 parent 0b9f8cb
History
File Mode Size
Fig7.m -rw-r--r-- 542 bytes
Fig7b.m -rw-r--r-- 11.3 KB
Fig8.m -rw-r--r-- 5.0 KB
Fig8_supp1.m -rw-r--r-- 3.3 KB
ORF_length.R -rw-r--r-- 9.0 KB
SARS-CoV-2_locate_genes.pl -rwxr-xr-x 13.0 KB
aligned_fasta2haplotypes.pl -rwxr-xr-x 10.9 KB
epitope_MHCI.R -rw-r--r-- 25.6 KB
epitope_MHCII.R -rw-r--r-- 25.8 KB
extract_fasta_by_sites.pl -rwxr-xr-x 8.0 KB
extract_positions_by_timepoint.py -rwxr-xr-x 9.1 KB
extract_seq_subset.py -rwxr-xr-x 2.3 KB
extract_seqs_by_location.py -rwxr-xr-x 3.8 KB
extract_seqs_by_timepoint.py -rwxr-xr-x 4.3 KB
extract_variable_columns_MSA.py -rwxr-xr-x 4.4 KB
extract_variable_columns_MSA_aa.py -rwxr-xr-x 4.4 KB
filter_VCF.py -rwxr-xr-x 10.4 KB
generate_random_protein.py -rwxr-xr-x 2.8 KB
generate_seqs_from_VCF.py -rwxr-xr-x 7.8 KB
hydrophobicity_profiles_ORF3a.R -rw-r--r-- 22.9 KB
mass-spec_vs_riboseq.R -rw-r--r-- 27.5 KB
riboseq.R -rw-r--r-- 84.1 KB
riboseq_sliding_window.R -rw-r--r-- 7.7 KB
selection_sliding_windows.R -rw-r--r-- 8.9 KB
selection_vs_expression.R -rw-r--r-- 10.0 KB
summarize_intrahost_by_site.py -rwxr-xr-x 26.0 KB
tally_epitope_coverage.py -rwxr-xr-x 3.1 KB
temporal_pi.R -rw-r--r-- 28.0 KB
three_levels_diversity.R -rw-r--r-- 113.1 KB
translate_nt_seq_file.pl -rwxr-xr-x 6.1 KB
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