4696899 | Chase W. Nelson | 01 October 2020, 17:39:04 UTC | Updated README with eLife citation | 01 October 2020, 17:39:04 UTC |
0b9f8cb | Chase W. Nelson | 27 September 2020, 09:29:05 UTC | Update with link to Zenodo | 27 September 2020, 09:29:05 UTC |
3b28bcc | Chase W. Nelson | 25 September 2020, 11:01:14 UTC | Updated riboseq script documentation with Unix command | 25 September 2020, 11:01:14 UTC |
7cdd041 | Chase W. Nelson | 21 September 2020, 09:53:43 UTC | Initial commit: figure 7 and 8 scripts | 21 September 2020, 09:53:43 UTC |
3863646 | Chase W. Nelson | 20 September 2020, 09:23:06 UTC | Update README.md | 20 September 2020, 09:23:06 UTC |
326cbef | Chase W. Nelson | 19 September 2020, 19:21:34 UTC | Update README.md | 19 September 2020, 19:21:34 UTC |
fc6aa35 | Chase W. Nelson | 19 September 2020, 19:19:56 UTC | Update README.md Added missing TOC | 19 September 2020, 19:19:56 UTC |
d766871 | Chase W. Nelson | 19 September 2020, 19:15:13 UTC | Update README.md | 19 September 2020, 19:15:13 UTC |
a4f43e4 | Chase W. Nelson | 19 September 2020, 19:12:53 UTC | Move data for Zotero instead; update README | 19 September 2020, 19:12:53 UTC |
0a08d62 | Chase W. Nelson | 19 September 2020, 18:12:51 UTC | Initial commit: selection_vs_expression.R | 19 September 2020, 18:12:51 UTC |
e5b2a5f | Chase W. Nelson | 19 September 2020, 17:45:25 UTC | Initial commit: mass-spec_vs_riboseq.R | 19 September 2020, 17:45:25 UTC |
1893546 | Chase W. Nelson | 19 September 2020, 12:49:05 UTC | Update cover image | 19 September 2020, 12:49:05 UTC |
d7b9917 | Chase W. Nelson | 18 September 2020, 18:27:02 UTC | Update README.md Fix formatting TOC | 18 September 2020, 18:27:02 UTC |
ecdd128 | Chase W. Nelson | 18 September 2020, 18:26:07 UTC | Update README.md Less busy TOC | 18 September 2020, 18:26:07 UTC |
4378867 | Chase W. Nelson | 18 September 2020, 18:23:04 UTC | Initial commit: selection_sliding_windows.R script and data | 18 September 2020, 18:23:04 UTC |
c33d71c | Chase W. Nelson | 18 September 2020, 17:38:42 UTC | Move all scripts to a /scripts/ subdirectory | 18 September 2020, 17:38:42 UTC |
42d4c41 | Chase W. Nelson | 18 September 2020, 17:36:35 UTC | Initial commit: riboseq.R | 18 September 2020, 17:36:35 UTC |
220c7b7 | Chase W. Nelson | 18 September 2020, 16:23:57 UTC | Initial commit: hydrophobicity profiles scripts and data | 18 September 2020, 16:23:57 UTC |
53ecff7 | Chase W. Nelson | 18 September 2020, 10:57:52 UTC | Update README.md Indented examples | 18 September 2020, 10:57:52 UTC |
8d10c02 | Chase W. Nelson | 18 September 2020, 10:54:56 UTC | Initial commit: three_levels_diversity.R and data | 18 September 2020, 10:54:56 UTC |
83fac3d | Chase W. Nelson | 18 September 2020, 10:22:59 UTC | Update temporal_pi.R | 18 September 2020, 10:22:59 UTC |
a5fe425 | Chase W. Nelson | 18 September 2020, 09:24:58 UTC | Update cover_image.png | 18 September 2020, 09:24:58 UTC |
14ed732 | Chase W. Nelson | 18 September 2020, 08:46:30 UTC | Update README.md | 18 September 2020, 08:46:30 UTC |
241c410 | Chase W. Nelson | 18 September 2020, 08:41:20 UTC | Upload randomized peptides and short unannotated ORFs | 18 September 2020, 08:41:20 UTC |
22031f3 | Chase W. Nelson | 18 September 2020, 08:25:56 UTC | Initial commit: epitope data and scripts | 18 September 2020, 08:25:56 UTC |
4493f82 | Chase W. Nelson | 18 September 2020, 06:41:19 UTC | Create .gitignore | 18 September 2020, 06:41:19 UTC |
6aba08a | Chase W. Nelson | 18 September 2020, 06:39:39 UTC | Update cover_image.png | 18 September 2020, 06:39:39 UTC |
36f496b | Chase W. Nelson | 18 September 2020, 06:34:11 UTC | Update cover_image.png | 18 September 2020, 06:34:11 UTC |
c0c13bf | Chase W. Nelson | 18 September 2020, 06:27:31 UTC | Update cover image and acknowledgments | 18 September 2020, 06:27:31 UTC |
76498d4 | Chase W. Nelson | 18 September 2020, 06:23:35 UTC | Update README.md | 18 September 2020, 06:23:35 UTC |
b24803c | Chase W. Nelson | 18 September 2020, 06:22:37 UTC | Update cover_image.png | 18 September 2020, 06:22:37 UTC |
86219d7 | Chase W. Nelson | 18 September 2020, 06:19:46 UTC | Update README.md | 18 September 2020, 06:19:46 UTC |
c1b0226 | Chase W. Nelson | 18 September 2020, 06:18:38 UTC | Update cover_image.png | 18 September 2020, 06:18:38 UTC |
ff99812 | Chase W. Nelson | 18 September 2020, 06:16:28 UTC | Update README.md | 18 September 2020, 06:16:28 UTC |
61e0c94 | Chase W. Nelson | 18 September 2020, 06:15:21 UTC | Update cover_image.png | 18 September 2020, 06:15:21 UTC |
4871ba6 | Chase W. Nelson | 18 September 2020, 06:12:38 UTC | Update README.md | 18 September 2020, 06:12:38 UTC |
0078bdb | Chase W. Nelson | 18 September 2020, 06:12:02 UTC | Cover image | 18 September 2020, 06:12:02 UTC |
4af19ff | Chase W. Nelson | 18 September 2020, 06:09:12 UTC | Add cover image, revise README | 18 September 2020, 06:09:12 UTC |
ae6cc1d | Chase W. Nelson | 17 September 2020, 18:37:22 UTC | Initial commit: extract_positions_by_timepoint.py | 17 September 2020, 18:37:22 UTC |
08a4450 | Chase W. Nelson | 17 September 2020, 18:22:07 UTC | Initial commit: extract_seqs_by_location.py | 17 September 2020, 18:22:07 UTC |
e1f1df1 | Chase W. Nelson | 17 September 2020, 10:53:34 UTC | Update README.md Reorder Figure 5 scripts | 17 September 2020, 10:53:34 UTC |
8e5ee4a | Chase W. Nelson | 17 September 2020, 10:51:14 UTC | Initial commit: temporal_pi.R | 17 September 2020, 10:51:14 UTC |
1fa17e5 | Chase W. Nelson | 17 September 2020, 10:13:37 UTC | Initial commit: extract_seqs_by_timepoint.py | 17 September 2020, 10:13:37 UTC |
23cd1f4 | Chase W. Nelson | 17 September 2020, 09:57:29 UTC | Initial commit: extract_variable_columns_MSA* and create data directory | 17 September 2020, 09:57:29 UTC |
d6fadf3 | Chase W. Nelson | 17 September 2020, 09:19:58 UTC | Update README.md | 17 September 2020, 09:19:58 UTC |
1234efc | Chase W. Nelson | 17 September 2020, 09:16:27 UTC | Update README.md Added SNPGenie reference; formatted examples as full Shell code blocks | 17 September 2020, 09:16:27 UTC |
4fbf1d9 | Chase W. Nelson | 17 September 2020, 09:06:30 UTC | Initial commit: extract_fasta_by_sites.pl | 17 September 2020, 09:06:30 UTC |
a3db4d6 | Chase W. Nelson | 17 September 2020, 08:46:17 UTC | Initial commit: aligned_fasta2haplotypes.pl | 17 September 2020, 08:46:17 UTC |
9ff78d9 | Chase W. Nelson | 17 September 2020, 08:27:01 UTC | Initial commit: translate_nt_seq_file.pl | 17 September 2020, 08:27:01 UTC |
8cc9472 | Chase W. Nelson | 17 September 2020, 08:13:27 UTC | Initial commit: summarize_intrahost_by_site.py | 17 September 2020, 08:13:27 UTC |
01a90c9 | Chase W. Nelson | 17 September 2020, 07:45:06 UTC | Initial commit: generate_seqs_from_VCF.py | 17 September 2020, 07:45:06 UTC |
185604d | Chase W. Nelson | 17 September 2020, 07:29:15 UTC | Initial commit: filter_vcf.py | 17 September 2020, 07:29:15 UTC |
6a831c2 | Chase W. Nelson | 17 September 2020, 06:25:46 UTC | Initial commit: extract_seq_subset.py | 17 September 2020, 06:25:46 UTC |
2b5b387 | Chase W. Nelson | 16 September 2020, 18:34:36 UTC | Initial commit: tally_epitope_coverage.py | 16 September 2020, 18:34:36 UTC |
9c66d6d | Chase W. Nelson | 16 September 2020, 18:23:23 UTC | Initial commit: generate_random_protein.py | 16 September 2020, 18:23:23 UTC |
3530901 | Chase W. Nelson | 16 September 2020, 18:07:35 UTC | Initial commit: supplementary data | 16 September 2020, 18:07:35 UTC |
bdc9bd8 | Chase W. Nelson | 16 September 2020, 17:45:24 UTC | Initial commit: riboseq_sliding_window.R | 16 September 2020, 17:45:24 UTC |
db2851a | Chase W. Nelson | 16 September 2020, 17:34:28 UTC | Initial commit of ORF_length.R Upload the script and its documentation, input, and output; add Schlub reference | 16 September 2020, 17:34:28 UTC |
02a7c5a | Chase W. Nelson | 16 September 2020, 10:27:36 UTC | Update README.md Removed superfluous punctuation | 16 September 2020, 10:27:36 UTC |
f7e3b0d | Chase W. Nelson | 16 September 2020, 10:26:58 UTC | Update README.md Introduced TOC; began documenting scripts; added acknowledgments, citation, contact information, and reference sections | 16 September 2020, 10:26:58 UTC |
07c4dfa | Chase W. Nelson | 09 August 2020, 08:35:10 UTC | Initial commit | 09 August 2020, 08:35:10 UTC |