Revision 48270681afc13081094f7f398a1e194c6b07ba9b authored by vdutor on 03 January 2018, 17:44:53 UTC, committed by Mark van der Wilk on 03 January 2018, 17:44:53 UTC 
Expectations framework (#591)
 
* Outline of new expectations code.

* Quadrature code now uses TensorFlow shape inference.

* General expectations work.

* Expectations RBF kern, not tested

* Add Identity mean function

* General unittests for Expectations

* Add multipledispatch package to travis

* Update tests_expectations

* Expectations of mean functions

* Mean function uncertain conditional

* Uncertain conditional with mean_function. Tested.

* Support for Add and Prod kernels and quadrature fallback decorator

* Refactor expectations unittests

* Psi stats Linear kernel

* Split expectations in different files

* Expectation Linear kernel and Linear mean function

* Remove None's from expectations api

* Removed old ekernels framework

* Add multipledispatch to setup file

* Work on PR feedback, not finished

* Addressed PR feedback

* Support for pairwise xKxz

* Enable expectations unittests

* Renamed `TimeseriesGaussian` to `MarkovGaussian` and added tests.

* Rename some variable, plus note for later test of <x Kxz>_q.

* Update conditionals.py

Add comment

* Change order of inputs to (feat, kern)

* Stef/expectations (#601)

* adding gaussmarkov quad

* don't override the markvogaussian in the quadrature

* can't test

* adding external test

* quadrature code done and works for MarkovGauss

* MarkovGaussian with quad implemented. All tests pass

* Shape comments.

* Removed superfluous autoflow functions for kernel expectations

* Update kernels.py

* Update quadrature.py
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.travis.yml
sudo: required
dist: trusty
language: python
python:
  - 3.6

before_install:
  - sudo apt-get update -qq

install:
  - pip install numpy scipy pandas pytest nbformat nbconvert jupyter_client jupyter matplotlib pytest-xdist pytest-cov codecov multipledispatch
  - pip install https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-1.4.0-cp36-cp36m-linux_x86_64.whl
  - python setup.py install

script:
  - pytest --durations=5 --cov=./ -d --tx 3*popen//python=python3.6 -k 'not notebook' --pyargs tests
  - codecov --token=2ae2a756-f39c-467c-bd9c-4bdb3dc439c8

cache:
  apt: true
  pip: true
  directories:
    - $HOME/.cache/pip
    - $HOME/download
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