Revision 48270681afc13081094f7f398a1e194c6b07ba9b authored by vdutor on 03 January 2018, 17:44:53 UTC, committed by Mark van der Wilk on 03 January 2018, 17:44:53 UTC
* Outline of new expectations code. * Quadrature code now uses TensorFlow shape inference. * General expectations work. * Expectations RBF kern, not tested * Add Identity mean function * General unittests for Expectations * Add multipledispatch package to travis * Update tests_expectations * Expectations of mean functions * Mean function uncertain conditional * Uncertain conditional with mean_function. Tested. * Support for Add and Prod kernels and quadrature fallback decorator * Refactor expectations unittests * Psi stats Linear kernel * Split expectations in different files * Expectation Linear kernel and Linear mean function * Remove None's from expectations api * Removed old ekernels framework * Add multipledispatch to setup file * Work on PR feedback, not finished * Addressed PR feedback * Support for pairwise xKxz * Enable expectations unittests * Renamed `TimeseriesGaussian` to `MarkovGaussian` and added tests. * Rename some variable, plus note for later test of <x Kxz>_q. * Update conditionals.py Add comment * Change order of inputs to (feat, kern) * Stef/expectations (#601) * adding gaussmarkov quad * don't override the markvogaussian in the quadrature * can't test * adding external test * quadrature code done and works for MarkovGauss * MarkovGaussian with quad implemented. All tests pass * Shape comments. * Removed superfluous autoflow functions for kernel expectations * Update kernels.py * Update quadrature.py
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RELEASE.md
# Release 1.1
- Added inter-domain inducing features. Inducing points are used by default and are now set with `model.feature.Z`.
# Release 1.0
* Clear and aligned with tree-like structure of GPflow models design.
* GPflow trainable parameters are no longer packed into one TensorFlow variable.
* Integration of bare TensorFlow and Keras models with GPflow became very simple.
* GPflow parameter wraps multiple tensors: unconstained variable, constrained tensor and prior tensor.
* Instantaneous parameter's building into the TensorFlow graph. Once you created an instance of parameter, it creates necessary tensors at default graph immediately.
* New implementation for AutoFlow. `autoflow` decorator is a replacement.
* GPflow optimizers match TensorFlow optimizer names. For e.g. `gpflow.train.GradientDescentOptimizer` mimics `tf.train.GradientDescentOptimizer`. They even has the same instantialization signature.
* GPflow has native support for Scipy optimizers - `gpflow.train.ScipyOptimizer`.
* GPflow has advanced HMC implementation - `gpflow.train.HMC`. It works only within TensorFlow memory scope.
* Tensor conversion decorator and context manager designed for cases when user needs to implicitly convert parameters to TensorFlow tensors: `gpflow.params_as_tensors` and `gpflow.params_as_tensors_for`.
* GPflow parameters and parameterized objects provide convenient methods and properties for building, intializing their tensors. Check `initializables`, `initializable_feeds`, `feeds` and other properties and methods.
* Floating shapes of parameters and dataholders without re-building TensorFlow graph.
# Release 0.5
- bugfix for log_jacobian in transforms
# Release 0.4.1
- Different variants of `gauss_kl_*` are now deprecated in favour of a unified `gauss_kl` implementation
# Release 0.4.0
- Rename python package name to `gpflow`.
- Compile function has external session and graph arguments.
- Tests use Tensorflow TestCase class for proper session managing.
# Release 0.3.8
- Change to LowerTriangular transform interface.
- LowerTriangular transform now used by default in VGP and SVGP
- LowerTriangular transform now used native TensorFlow
- No longer use bespoke GPflow user ops.
# Release 0.3.7
- Improvements to VGP class allow more straightforward optimization
# Release 0.3.6
- Changed ordering of parameters to be alphabetical, to ensure consistency
# Release 0.3.5
- Update to work with TensorFlow 0.12.1.
# Release 0.3.4
- Changes to stop computations all being done on the default graph.
- Update list of GPflow contributors and other small changes to front page.
- Better deduction of `input_dim` for `kernels.Combination`
- Some kernels did not properly respect active dims, now fixed.
- Make sure log jacobian is computed even for fixed variables
# Release 0.3.3
- House keeping changes for paper submission.
# Release 0.3.2
- updated to work with tensorflow 0.11 (release candidate 1 available at time of writing)
- bugfixes in vgp._compile
# Release 0.3.1
- Added configuration file, which controls verbosity and level of numerical jitter
- tf_hacks is deprecated, became tf_wraps (tf_hacks will raise visible deprecation warnings)
- Documentation now at gpflow.readthedocs.io
- Many functions are now contained in tensorflow scopes for easier tensorboad visualisation and profiling
# Release 0.3
- Improvements to the way that parameters for triangular matrices are stored and optimised.
- Automatically generated Apache license headers.
- Ability to track log probabilities.
# Release 0.2
- Significant improvements to the way that data and fixed parameters are handled.
Previously, data and fixed parameters were treated as tensorflow constants.
Now, a new mechanism called `get_feed_dict()` can gather up data and and fixed
parameters and pass them into the graph as placeholders.
- To enable the above, data are now stored in objects called `DataHolder`. To
access values of the data, use the same syntax as parameters:
`print(m.X.value)`
- Models do not need to be recompiled when the data changes.
- Two models, VGP and GPMC, do need to be recompiled if the *shape* of the data changes
- A multi-class likelihood is implemented
# Release 0.1.4
- Updated to work with tensorflow 0.9
- Added a Logistic transform to enable contraining a parameter between two bounds
- Added a Laplace distribution to use as a prior
- Added a periodic kernel
- Several improvements to the AutoFlow mechanism
- added FITC approximation (see comparison notebook)
- improved readability of code according to pep8
- significantly improved the speed of the test suite
- allowed passing of the 'tol' argument to scipy.minimize routine
- added ability to add and multiply MeanFunction objects
- Several new contributors (see README.md)
# Release 0.1.3
- Removed the need for a fork of TensorFlow. Some of our bespoke ops are replaced by equivalent versions.
# Release 0.1.2
- Included the ability to compute the full covaraince matrix at predict time. See `GPModel.predict_f`
- Included the ability to sample from the posterior function values. See `GPModel.predict_f_samples`
- Unified code in conditionals.py: see deprecations in `gp_predict`, etc.
- Added SGPR method (Sparse GP Regression)
# Release 0.1.1
- included the ability to use tensorflow's optimizers as well as the scipy ones
# Release 0.1.0
The initial release of GPflow.

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