| 49bf399 | Asher Preska Steinberg | 07 February 2022, 16:12:20 UTC | Commit for ReduceCoreGenome | 07 February 2022, 16:12:20 UTC |
| 86759f7 | Asher Preska Steinberg | 07 February 2022, 16:10:21 UTC | Commit for ReduceCoreGenome | 07 February 2022, 16:10:21 UTC |
| ada21ba | Asher Preska Steinberg | 29 October 2021, 14:16:15 UTC | README update | 29 October 2021, 14:16:15 UTC |
| e03b82e | Asher Preska Steinberg | 16 September 2021, 15:51:53 UTC | test commit | 16 September 2021, 15:51:53 UTC |
| de01041 | Asher Preska Steinberg | 16 September 2021, 15:33:24 UTC | Updated README.md | 16 September 2021, 15:33:24 UTC |
| 129fbdc | Asher Preska Steinberg | 24 June 2021, 13:48:07 UTC | Updates to README.md and commits for hinfluenzae example | 24 June 2021, 13:48:07 UTC |
| f59a2af | Asher Preska Steinberg | 23 June 2021, 19:59:02 UTC | Updates to README.md; deletion of hpc_submissions folder | 23 June 2021, 19:59:02 UTC |
| 165c191 | Asher Preska Steinberg | 23 June 2021, 19:42:27 UTC | Updates to README.md for publication; Example with H. influenzae | 23 June 2021, 19:42:27 UTC |
| ca9768e | Asher Preska Steinberg | 23 June 2021, 18:41:55 UTC | making RefAligner CLI | 23 June 2021, 18:41:55 UTC |
| 6ae7ae6 | Asher Preska Steinberg | 23 June 2021, 17:21:56 UTC | making RefAligner CLI | 23 June 2021, 17:21:56 UTC |
| 6a9e043 | Asher Preska Steinberg | 22 June 2021, 22:37:17 UTC | cleaning up currentbio branch | 22 June 2021, 22:37:17 UTC |
| 1d15a9c | Asher Preska Steinberg | 22 June 2021, 22:35:59 UTC | cleaning up currentbio branch | 22 June 2021, 22:35:59 UTC |
| b8e7b84 | Asher Preska Steinberg | 22 June 2021, 22:18:33 UTC | cleaning up currentbio branch | 22 June 2021, 22:18:33 UTC |
| d13ad48 | Asher Preska Steinberg | 22 June 2021, 22:18:15 UTC | cleaning up currentbio branch | 22 June 2021, 22:18:15 UTC |
| 32054fe | Asher Preska Steinberg | 22 June 2021, 22:13:01 UTC | cleaning up currentbio branch | 22 June 2021, 22:13:01 UTC |
| 82c69f3 | Asher Preska Steinberg | 22 June 2021, 20:38:49 UTC | updated readme for currentbio branch | 22 June 2021, 20:38:49 UTC |
| 57a651f | Asher Preska Steinberg | 22 June 2021, 20:33:23 UTC | Second test commit for currentbio branch | 22 June 2021, 20:33:23 UTC |
| 61fb958 | Asher Preska Steinberg | 22 June 2021, 20:30:51 UTC | test commit for currentbio branch ... | 22 June 2021, 20:30:51 UTC |
| 58a33d0 | Asher Preska Steinberg | 22 June 2021, 20:29:58 UTC | test commit for currentbio branch ... | 22 June 2021, 20:29:58 UTC |
| b282478 | Asher Preska Steinberg | 22 June 2021, 19:23:58 UTC | APS202 submission script commits | 22 June 2021, 19:23:58 UTC |
| 2188ea9 | Asher Preska Steinberg | 19 May 2021, 00:42:31 UTC | APS180 submission scripts; APS183-190 submission scripts, APS192-202 submission scripts; ReduceCoreGenome commit | 19 May 2021, 00:42:31 UTC |
| 03cc5d7 | Asher Preska Steinberg | 30 March 2021, 14:39:30 UTC | APS180 commit for GeneBins code; Additional commits for APS169, and slurm submission scripts for APS170, APS171, and APS173 | 30 March 2021, 14:39:30 UTC |
| d92b48f | Asher Preska Steinberg | 10 March 2021, 15:15:52 UTC | APS168-169 commits; commit of FilterGaps to filter gapped alignments; commit of updated version of SplitGenome to split into core and flexible genomes after gap filtering; submission scripts | 10 March 2021, 15:15:52 UTC |
| bb3aaa9 | Asher Preska Steinberg | 05 March 2021, 20:14:12 UTC | APS168 commits; commit of FilterGaps to filter gapped alignments | 05 March 2021, 20:14:12 UTC |
| 30aeef1 | Asher Preska Steinberg | 24 February 2021, 15:33:56 UTC | APS168 further cleanup; incorporation of appropriate go packages from both PangenomeAlignmentGenerator and go-misc | 24 February 2021, 15:33:56 UTC |
| 4a618e4 | Asher Preska Steinberg | 24 February 2021, 15:22:57 UTC | APS168 cleanup | 24 February 2021, 15:22:57 UTC |
| 9b66eec | Asher Preska Steinberg | 01 December 2020, 16:25:47 UTC | APS156 fetchnmap_v2 readme file | 01 December 2020, 16:25:47 UTC |
| 00c7ccb | Asher Preska Steinberg | 28 November 2020, 17:12:15 UTC | APS156 fetchnmap; mapncleantars for unpacking tarballs and mapping them | 28 November 2020, 17:12:15 UTC |
| 06a5764 | Asher Preska Steinberg | 28 November 2020, 16:39:45 UTC | APS156 fetchnmap gnu parallel speedup | 28 November 2020, 16:39:45 UTC |
| 3fdad27 | Asher Preska Steinberg | 27 November 2020, 18:48:37 UTC | APS156 fetchnmap package edits; "mapnclean" deploy to HPC | 27 November 2020, 18:48:37 UTC |
| 85657d4 | Asher Preska Steinberg | 26 November 2020, 18:47:28 UTC | APS156 fetchnmap package v1 with tarball compression for downloads | 26 November 2020, 18:47:28 UTC |
| f676bf7 | Asher Preska Steinberg | 25 November 2020, 21:22:35 UTC | APS156 fetchnmap package fix for running multiple parallel jobs | 25 November 2020, 21:22:35 UTC |
| 484d9e2 | Asher Preska Steinberg | 25 November 2020, 16:04:00 UTC | APS156 fetchnmap package fix to setuptools to include non-python files in package install | 25 November 2020, 16:04:00 UTC |
| 1eec005 | Asher Preska Steinberg | 25 November 2020, 15:03:34 UTC | APS156 potential speedup for fetchnmap package | 25 November 2020, 15:03:34 UTC |
| 0a68df1 | Asher Preska Steinberg | 24 November 2020, 21:33:59 UTC | APS156 edit to fetchnmap package | 24 November 2020, 21:33:59 UTC |
| bbf675e | Asher Preska Steinberg | 24 November 2020, 18:49:33 UTC | APS156 initial commit for fetchnmap package | 24 November 2020, 18:49:33 UTC |
| a739c19 | Asher Preska Steinberg | 20 October 2020, 16:58:24 UTC | Trying a speed up for FetchSRA_APS2.py; also updates for ReferenceAlignmentGenerateENA | 20 October 2020, 16:58:24 UTC |
| e127e8d | Asher Preska Steinberg | 29 September 2020, 21:35:45 UTC | APS138 updated ReferenceAlignmentGenerateENA | 29 September 2020, 21:35:45 UTC |
| 1544fa1 | Asher Preska Steinberg | 14 September 2020, 16:39:18 UTC | ref alignments from ENA using ftp client | 14 September 2020, 16:39:18 UTC |
| 35bc3d2 | Asher Preska Steinberg | 14 September 2020, 14:35:05 UTC | correction of small error in FetchENA.py | 14 September 2020, 14:35:05 UTC |
| 78b462c | Asher Preska Steinberg | 14 September 2020, 14:30:42 UTC | update to FetchENA; looks for existing files and utilizes NYU HPC dtn | 14 September 2020, 14:30:42 UTC |
| 9c3bf33 | Asher Preska Steinberg | 12 September 2020, 23:21:30 UTC | Alignments for sra files from ENA | 12 September 2020, 23:21:30 UTC |
| 666ee87 | Asher Preska Steinberg | 29 July 2020, 18:34:10 UTC | no progress bar | 29 July 2020, 18:34:10 UTC |
| 34ef078 | Asher Preska Steinberg | 29 July 2020, 13:17:19 UTC | cue when done with Gene Alignment | 29 July 2020, 13:17:19 UTC |
| a3a2e78 | Asher Preska Steinberg | 28 July 2020, 17:46:02 UTC | attempt to write to moving back to scratch | 28 July 2020, 17:46:02 UTC |
| 5beb969 | Asher Preska Steinberg | 28 July 2020, 14:30:58 UTC | attempt to write to beegfs | 28 July 2020, 14:30:58 UTC |
| e66d967 | Asher Preska Steinberg | 28 July 2020, 13:54:53 UTC | attempt to write to beegfs | 28 July 2020, 13:54:53 UTC |
| 5454eb3 | Asher Preska Steinberg | 28 July 2020, 13:54:17 UTC | attempt to write to beegfs | 28 July 2020, 13:54:17 UTC |
| 86aba8c | Asher Preska Steinberg | 28 July 2020, 12:56:31 UTC | using new version of sra toolkit | 28 July 2020, 12:56:31 UTC |
| 2e77737 | Asher Preska Steinberg | 27 July 2020, 22:15:05 UTC | new path for sra files | 27 July 2020, 22:15:05 UTC |
| 7353d89 | Asher Preska Steinberg | 27 July 2020, 22:05:04 UTC | new path for sra files | 27 July 2020, 22:05:04 UTC |
| c55c46c | Asher Preska Steinberg | 27 July 2020, 21:39:07 UTC | Updates for new versions of sra tools | 27 July 2020, 21:39:07 UTC |
| ce4cb2e | Mingzhi Lin | 29 January 2018, 17:49:32 UTC | Update ReferenceAlignmentGenerate | 29 January 2018, 17:49:32 UTC |
| fe3ca00 | Mingzhi Lin | 29 January 2018, 17:46:50 UTC | add more documentation | 29 January 2018, 17:46:50 UTC |
| 404404e | Mingzhi Lin | 28 January 2018, 22:20:21 UTC | Update README.md | 28 January 2018, 22:20:21 UTC |
| ba35c9d | Mingzhi Lin | 28 January 2018, 22:19:38 UTC | Update README.md | 28 January 2018, 22:19:38 UTC |
| 4a64e91 | Mingzhi Lin | 26 January 2018, 21:56:21 UTC | Update README.md | 26 January 2018, 21:56:21 UTC |
| e51013d | Mingzhi Lin | 26 January 2018, 21:42:48 UTC | Add Dockerfile | 26 January 2018, 21:42:48 UTC |
| 00b5f99 | Mingzhi Lin | 26 January 2018, 21:32:40 UTC | fix bug | 26 January 2018, 21:32:40 UTC |
| 7f01bea | Mingzhi Lin | 26 January 2018, 21:29:36 UTC | v0.1 | 26 January 2018, 21:29:36 UTC |
| 0511df4 | Mingzhi Lin | 26 January 2018, 20:56:34 UTC | add README.md | 26 January 2018, 20:56:34 UTC |
| 18f09cb | Mingzhi Lin | 26 January 2018, 20:52:14 UTC | first commit | 26 January 2018, 20:52:14 UTC |
