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Revision Author Date Message Commit Date
4a0ab26 Update README.md 22 April 2023, 16:31:58 UTC
7b92fe7 Merge pull request #70 from ddeka2910/master Add architecture ppc64le to travis build 08 December 2020, 17:38:21 UTC
686db1b Add architecture ppc64le to travis build 02 December 2020, 10:17:21 UTC
031e062 Update README.md 25 October 2020, 02:46:53 UTC
fe151c7 Update README.md 25 October 2020, 02:46:08 UTC
06d695b Merge pull request #66 from pmoulos/networkx_prop_fix Proposed fix for networkx removed function 16 July 2020, 22:24:03 UTC
44b343a Merge pull request #65 from bernard-kim/master dtype conversion in hal.py 09 July 2020, 19:40:30 UTC
cc51eb6 Proposed fix for networkx removed function 09 July 2020, 14:50:07 UTC
36dda07 dtype conversion in hal.py 02 July 2020, 05:39:54 UTC
5ad9ea6 Update USAGE.md 31 March 2020, 01:02:32 UTC
00f6819 mention maf in the docs 31 March 2020, 01:01:51 UTC
f1e7a74 forgot to update setup.py 17 March 2020, 21:36:20 UTC
9f93661 toy test added 17 March 2020, 21:06:11 UTC
f0fa36f docs update 17 March 2020, 20:50:09 UTC
784c288 setuptools instead of distutils 17 March 2020, 19:39:02 UTC
42fa405 disable python version check in setup.py 17 March 2020, 02:37:39 UTC
ef228bf newick parser fix 17 March 2020, 00:49:47 UTC
a6524a8 fixed bug with missing link 16 March 2020, 23:43:03 UTC
6650d29 travis v4 16 March 2020, 23:39:05 UTC
e3d1d9a travis v3 16 March 2020, 23:37:02 UTC
17b21d5 travis v2 16 March 2020, 23:34:33 UTC
f798099 travis fix 16 March 2020, 23:28:20 UTC
c9a4cfa fixed hardcoded py2 in tests 16 March 2020, 23:11:56 UTC
26e9238 six.py integrated 16 March 2020, 23:06:20 UTC
0720832 travis py2 and py3 16 March 2020, 22:50:30 UTC
4e60683 modernize scripts 16 March 2020, 22:47:15 UTC
642d551 script warnings fixed 16 March 2020, 22:43:40 UTC
f2ac2d0 update gaps in the very end 14 March 2020, 00:53:18 UTC
b8c81f9 allow Py3 14 March 2020, 00:38:41 UTC
c838c36 fixed a couple of bugs with contig links representation 14 March 2020, 00:37:29 UTC
5aedea7 assembly refine determinism 14 March 2020, 00:15:24 UTC
69a94a8 well, this is weird, but looks like networkx might change the objects 12 March 2020, 02:06:42 UTC
23c7ddb works for Py3 12 March 2020, 02:05:42 UTC
51d7520 deterministic tree 11 March 2020, 23:22:34 UTC
9e97483 most warnings fixed 11 March 2020, 00:54:38 UTC
c826a1a more warnings fixed 10 March 2020, 23:14:50 UTC
a578afd towards py3: fixing pylint warnings 10 March 2020, 22:55:49 UTC
82763de Merge pull request #55 from enormandeau/patch-1 explicitely require bioconda channel for conda 19 January 2020, 20:37:07 UTC
2f299d6 Update INSTALL.md 17 January 2020, 20:12:14 UTC
bd2fba7 specifying networkx version 2.2 19 August 2019, 19:26:42 UTC
2d93fe7 Update README.md 08 April 2019, 22:51:35 UTC
ec749b9 deleted old unneeded scripts, fix #37 and #36 08 April 2019, 22:38:40 UTC
5159e50 fix #38 08 April 2019, 22:34:47 UTC
54a864f remove debug print 08 April 2019, 22:12:04 UTC
a9d35f7 setup file update 08 April 2019, 21:24:40 UTC
3b50427 2.2 08 April 2019, 21:15:29 UTC
5292c29 Newick module moved to ragout root, installation instructions update 08 April 2019, 21:14:14 UTC
d30f5ce Merge pull request #41 from latticetower/master Make everything work with networkx >= 2.2. 08 April 2019, 19:55:07 UTC
b32c173 fix another permission error during travis-ci run 26 March 2019, 15:23:10 UTC
c3bc4cc fix permission error during travis-ci run 26 March 2019, 14:51:44 UTC
9e0e4e5 add networkx dependency to travis-ci script 26 March 2019, 14:46:01 UTC
ae9e1d1 remove redundant round brackets: edges() -> edges, nodes() -> nodes 26 March 2019, 14:26:56 UTC
f4d4e22 fix AttributeError: 'set' object has no attribute 'items' 25 March 2019, 14:08:08 UTC
e3a06ef fix TypeError: object of type 'dictionary-keyiterator' has no len() 25 March 2019, 13:32:22 UTC
d49a5c4 replace edges_iter iterator with edges iterator in networkx graphs 25 March 2019, 13:09:30 UTC
f865c3e remove networkx from lib dir 25 March 2019, 13:04:12 UTC
758500e Merge branch 'devel' 17 March 2019, 01:49:37 UTC
1637fbf Merge branch 'master' into devel 16 March 2019, 00:05:00 UTC
fbffe40 gff parser for maf2synteny 16 March 2019, 00:04:27 UTC
c21e237 Citations update 31 October 2018, 01:34:43 UTC
9b706fa version update 30 July 2018, 20:00:30 UTC
2b3e6d5 installation script + repository reorganisation 28 July 2018, 00:03:15 UTC
a68b9db bioconda badge 27 July 2018, 01:48:58 UTC
51ecff3 docs update 2 27 July 2018, 01:39:47 UTC
2300e45 docs update 27 July 2018, 00:03:16 UTC
67a513a a fix for sorting leaves by distance function 26 July 2018, 23:06:30 UTC
da193f0 updated newick packages source, now consistent with Bioconda version 26 July 2018, 20:31:49 UTC
119e6dc some auxialary scipts changes 18 July 2018, 20:14:16 UTC
2c85472 non-recursive dfs implementation + some logging improvements 18 July 2018, 20:12:54 UTC
626d759 some changes 09 July 2018, 19:18:39 UTC
0cb7679 custom block sizes 08 July 2018, 04:15:09 UTC
f453881 minimap verification script 06 July 2018, 02:36:51 UTC
71562fc a fix for empty parent scaffold during merging 20 December 2016, 19:41:37 UTC
0543d6d more informative message for empty permutation file 20 December 2016, 19:41:06 UTC
78e959d a fix for genomes with dots 03 December 2016, 01:15:25 UTC
70de692 centered logo 28 November 2016, 21:11:23 UTC
766b2ec figure fix 28 November 2016, 21:07:05 UTC
8322e1d logo 28 November 2016, 21:05:37 UTC
a603106 typo 28 November 2016, 20:39:26 UTC
c9b5d38 minor docs update 28 November 2016, 20:31:55 UTC
6eed507 news 28 November 2016, 20:22:31 UTC
a75e60e typo 28 November 2016, 20:19:24 UTC
26d4aac refinement disabled by default 28 November 2016, 20:18:42 UTC
4559980 documentation update 28 November 2016, 20:05:29 UTC
a7b6644 error if no unique synteny blocks 14 November 2016, 19:10:13 UTC
83789c3 Merge branch 'master' into devel 09 November 2016, 23:35:46 UTC
7ec4e12 counting target-specific breakpoints, --inMemory option for hal removed 09 November 2016, 23:35:13 UTC
ebd9205 Update README.md 07 November 2016, 01:04:53 UTC
83f232f Merge branch 'master' into devel 19 August 2016, 23:50:55 UTC
4bfbda6 fix negative gaps after assebly refinement 19 August 2016, 19:44:37 UTC
343c077 oups 09 August 2016, 01:25:37 UTC
4674e03 some refactoring and logging improvement 09 August 2016, 01:14:00 UTC
27e6ef3 readme 17 February 2016, 20:49:21 UTC
3bbd6c9 an option to disable chimera detection module + sorting output fasta 17 February 2016, 20:30:17 UTC
b3bf289 Merge branch 'master' into devel 17 February 2016, 19:29:27 UTC
024d279 tests fixed 23 January 2016, 02:49:25 UTC
8283a58 small improvement 23 January 2016, 02:13:28 UTC
73def46 a small fix in verify-order 23 January 2016, 02:11:45 UTC
b4ec394 test fix 19 January 2016, 02:30:05 UTC
f2e21cd a small fix for verification script 19 January 2016, 02:23:37 UTC
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