| 4bf0e08 | Berke Toptas | 27 December 2017, 20:36:08 UTC | sample execution command is corrected | 27 December 2017, 20:36:08 UTC |
| 2fadade | Berke Toptas | 27 December 2017, 17:05:20 UTC | changelog of v 0.7.5 is added | 27 December 2017, 17:05:20 UTC |
| 689626c | Berke Toptas | 27 December 2017, 16:52:23 UTC | spacing after license file is corrected | 27 December 2017, 16:52:23 UTC |
| f9da18b | Berke Toptas | 27 December 2017, 16:48:49 UTC | GPL License is added to file headers | 27 December 2017, 16:48:49 UTC |
| 8410984 | Berke Toptas | 26 December 2017, 23:26:24 UTC | Version is updated to 0.7.5 | 26 December 2017, 23:26:24 UTC |
| 8a580f8 | Berke Toptas | 26 December 2017, 23:25:43 UTC | MergeFunc() is refactored : sub tasks are moved to helper functions | 26 December 2017, 23:25:43 UTC |
| 9446a09 | Berke Toptas | 26 December 2017, 23:24:16 UTC | a cutoff is added in SetChromosomeIdTuples() | 26 December 2017, 23:24:16 UTC |
| 4446455 | Berke Toptas | 26 December 2017, 21:20:15 UTC | Refactoring : duplicate code segments are refactored | 26 December 2017, 21:20:15 UTC |
| 55e0bea | Berke Toptas | 26 December 2017, 21:19:22 UTC | Refactoring : duplicate code segments are refactored | 26 December 2017, 21:19:22 UTC |
| e17055d | Berke Toptas | 26 December 2017, 16:55:54 UTC | Refactoring : Duplicate code segments are refactored | 26 December 2017, 16:55:54 UTC |
| 2d15633 | Berke Toptas | 26 December 2017, 16:53:07 UTC | Refactoring | 26 December 2017, 16:53:07 UTC |
| e80d25c | Berke Toptas | 26 December 2017, 16:52:39 UTC | SetThreadsCustom function signature is removed | 26 December 2017, 16:52:39 UTC |
| 96412e8 | Berke Toptas | 26 December 2017, 16:51:58 UTC | redundant else statements are removed | 26 December 2017, 16:51:58 UTC |
| 56a9a67 | Berke Toptas | 21 December 2017, 16:33:53 UTC | Refactoring: FindOptimalTrimmings() method moved to BaseVariantProvider | 21 December 2017, 16:33:53 UTC |
| 53d89e6 | Berke Toptas | 21 December 2017, 15:43:37 UTC | Variant ID from vcf file is read | 21 December 2017, 15:43:37 UTC |
| 1cabd42 | Berke Toptas | 19 December 2017, 14:24:00 UTC | closevcf() - freed parameters are set to NULL | 19 December 2017, 14:24:00 UTC |
| 237e2de | Berke Toptas | 19 December 2017, 14:21:27 UTC | SContig clean() method is modified | 19 December 2017, 14:21:27 UTC |
| 03c463a | Berke Toptas | 19 December 2017, 14:15:50 UTC | SetVariantStatus functions are removed | 19 December 2017, 14:15:50 UTC |
| 1d0befc | Berke Toptas | 12 December 2017, 20:14:07 UTC | changelog is updated for VBT v0.7.4 | 12 December 2017, 20:14:07 UTC |
| 5cf6c92 | Berke Toptas | 12 December 2017, 19:53:43 UTC | version is moved to 0.7.4 | 12 December 2017, 19:53:43 UTC |
| b038875 | Berke Toptas | 12 December 2017, 19:52:22 UTC | Additional error reporting is added to addRecord() function | 12 December 2017, 19:52:22 UTC |
| b77cb9f | Berke Toptas | 12 December 2017, 19:51:47 UTC | Ga4gh mode, empty samples are added to the record when there is no merge | 12 December 2017, 19:51:47 UTC |
| 55f6a97 | Berke Toptas | 12 December 2017, 19:50:25 UTC | Complex skipped variant assign is corrected (now marking variants after the last included variant) | 12 December 2017, 19:50:25 UTC |
| a8d1ba5 | Berke Toptas | 11 December 2017, 22:41:41 UTC | Third-party licenses file is added | 11 December 2017, 22:41:41 UTC |
| dcd5772 | Berke Toptas | 11 December 2017, 22:39:52 UTC | licenses folder is removed | 11 December 2017, 22:39:52 UTC |
| 29fb89d | Berke Toptas | 11 December 2017, 20:16:11 UTC | Docker file is added as an alternative build | 11 December 2017, 20:16:11 UTC |
| 347f56c | Berke Toptas | 11 December 2017, 19:28:23 UTC | Xcode project file is removed | 11 December 2017, 19:28:23 UTC |
| 1ed50c5 | Berke Toptas | 11 December 2017, 17:03:24 UTC | vbt executive is added to gitignore | 11 December 2017, 17:03:24 UTC |
| cef0b60 | Berke Toptas | 11 December 2017, 17:01:45 UTC | .gitignore is added to remove xcode.proj and DS_Store | 11 December 2017, 17:01:45 UTC |
| 6b104d8 | Berke Toptas | 11 December 2017, 16:56:35 UTC | .DS_Store files are removed from git | 11 December 2017, 16:56:35 UTC |
| 0550014 | Berke Toptas | 11 December 2017, 16:53:28 UTC | new line is added between nocall mode definitions | 11 December 2017, 16:53:28 UTC |
| b1bfc52 | Berke Toptas | 11 December 2017, 16:48:50 UTC | Licenses are added for RTG and HTSLIB dependencies | 11 December 2017, 16:48:50 UTC |
| ec2b650 | Berke Toptas | 11 December 2017, 16:29:39 UTC | Changelog file is added | 11 December 2017, 16:29:39 UTC |
| 4b3cb0f | Berke Toptas | 11 December 2017, 16:15:15 UTC | bcf word changed with vcf.gz | 11 December 2017, 16:15:15 UTC |
| 94d0fb2 | Berke Toptas | 11 December 2017, 16:02:58 UTC | version is updated to 0.7.3 | 11 December 2017, 16:02:58 UTC |
| 72b42ac | Berke Toptas | 11 December 2017, 16:01:29 UTC | Readme is updated. Example test data is added | 11 December 2017, 16:01:29 UTC |
| 2106622 | Berke Toptas | 11 December 2017, 15:45:24 UTC | Error message added when contig is not available in FASTA file | 11 December 2017, 15:45:24 UTC |
| 9cdcfee | Berke Toptas | 11 December 2017, 14:54:09 UTC | Ga4gh mode GetSkippedComplexVariants() function is corrected | 11 December 2017, 14:54:09 UTC |
| 2cb61ba | Berke Toptas | 08 December 2017, 19:52:12 UTC | Readme modified (graph comparison is removed) | 08 December 2017, 19:52:12 UTC |
| 9617d9f | Berke Toptas | 08 December 2017, 19:44:48 UTC | readme modified | 08 December 2017, 19:44:48 UTC |
| fdb13ad | Berke Toptas | 08 December 2017, 19:41:53 UTC | graph comparison is removed from makefile | 08 December 2017, 19:41:53 UTC |
| b9d02ac | Berke Toptas | 08 December 2017, 19:36:20 UTC | GraphComparison is removed from repository | 08 December 2017, 19:36:20 UTC |
| 9bf3b25 | Berke Toptas | 08 December 2017, 19:17:41 UTC | Graph Comparison is removed from project main function header is modified | 08 December 2017, 19:17:41 UTC |
| 5d71d27 | Berke Toptas | 08 December 2017, 19:04:16 UTC | FileHeaders are updated | 08 December 2017, 19:04:16 UTC |
| 0194915 | Berke Toptas | 08 December 2017, 16:13:53 UTC | extra space removed | 08 December 2017, 16:13:53 UTC |
| 12782e6 | Berke Toptas | 08 December 2017, 16:13:25 UTC | extra space removed | 08 December 2017, 16:13:25 UTC |
| 7cf02b3 | Berke Toptas | 08 December 2017, 14:36:37 UTC | redundant m_aContigList parameter is removed Variant provide destructor updated | 08 December 2017, 14:36:37 UTC |
| b7c20ad | Berke Toptas | 07 December 2017, 23:35:40 UTC | make file updated to compile CBaseVariantProvider | 07 December 2017, 23:35:40 UTC |
| 44ac017 | Berke Toptas | 07 December 2017, 23:06:22 UTC | -ga4gh output is sorted -ComplexSkipped variants are added to the non assessed variant list | 07 December 2017, 23:06:22 UTC |
| b98a0fe | Berke Toptas | 07 December 2017, 23:05:24 UTC | GetSkippedComplexVariants() function is added GetNonAssessedVariants() return type is modified | 07 December 2017, 23:05:24 UTC |
| 527bb90 | Berke Toptas | 07 December 2017, 23:04:30 UTC | not assessed variant input time converted from const ref to const pointer | 07 December 2017, 23:04:30 UTC |
| 2e22f28 | Berke Toptas | 07 December 2017, 23:03:48 UTC | CompareOrientedVariantsById() is added | 07 December 2017, 23:03:48 UTC |
| af60278 | Berke Toptas | 07 December 2017, 21:16:37 UTC | -platform-mode parameter is removed | 07 December 2017, 21:16:37 UTC |
| 4fe392f | Berke Toptas | 07 December 2017, 20:48:28 UTC | CBaseVariantProvider class is written and common methods are gathered here | 07 December 2017, 20:48:28 UTC |
| 1b5bbf2 | Berke Toptas | 07 December 2017, 20:47:42 UTC | FASTA contigs are read during chromosome processing (instead of reading at the beginning) | 07 December 2017, 20:47:42 UTC |
| 0161eb2 | Berke Toptas | 07 December 2017, 20:45:54 UTC | minor fixes | 07 December 2017, 20:45:54 UTC |
| 49edffc | Berke Toptas | 07 December 2017, 20:42:43 UTC | place of lock is corrected | 07 December 2017, 20:42:43 UTC |
| 98d57c6 | Berke Toptas | 07 December 2017, 16:50:11 UTC | CVcfanalzer additional comment is added | 07 December 2017, 16:50:11 UTC |
| 5555a9e | Berke Toptas | 07 December 2017, 16:32:47 UTC | IsFileExists() moved to Utils.cpp | 07 December 2017, 16:32:47 UTC |
| 4109b34 | Berke Toptas | 07 December 2017, 16:08:24 UTC | Base folder named as Utils. Makefile is updated to compile utils.cpp | 07 December 2017, 16:08:24 UTC |
| 7730363 | Berke Toptas | 06 December 2017, 22:09:14 UTC | Utils folder is renamed | 06 December 2017, 22:09:14 UTC |
| b922c4d | Berke Toptas | 06 December 2017, 21:49:46 UTC | Common functions are moved to CUtils. FillVariants() is refactored | 06 December 2017, 21:49:46 UTC |
| bf33df4 | Berke Toptas | 06 December 2017, 21:48:15 UTC | VariantIteratorV2 is renamed as VariantIteratorGa4gh and source file is splitted from the header | 06 December 2017, 21:48:15 UTC |
| 46562bd | Berke Toptas | 06 December 2017, 21:29:15 UTC | integers are assigned to enums | 06 December 2017, 21:29:15 UTC |
| 88f56d8 | Berke Toptas | 06 December 2017, 21:27:04 UTC | commented constant is removed | 06 December 2017, 21:27:04 UTC |
| e9badfd | Berke Toptas | 06 December 2017, 18:37:21 UTC | integers are assigned to enum values | 06 December 2017, 18:37:21 UTC |
| 2f43ae2 | Berke Toptas | 01 December 2017, 22:09:53 UTC | contig is set to NULL after cleaning | 01 December 2017, 22:09:53 UTC |
| 7708f9e | Berke Toptas | 01 December 2017, 22:09:22 UTC | data racing problem resolved | 01 December 2017, 22:09:22 UTC |
| 2baa3ac | Berke Toptas | 28 November 2017, 18:32:15 UTC | ProcessRefOverlappedRegions - No call variants now precedes violation variants when altering decisions | 28 November 2017, 18:32:15 UTC |
| 3829d33 | Berke Toptas | 27 November 2017, 21:16:08 UTC | CheckUniqueVars is modified to cover splitter multi allelic variants Redundant function are removed version tag updated to v0.7.2 | 27 November 2017, 21:16:08 UTC |
| e646f16 | Berke Toptas | 21 November 2017, 16:34:42 UTC | VBT version update : v0.7.1 - VBT takes additional parameter for ref overlap mode that is used to determine if suffix or prefix will be clipped from alleles first | 21 November 2017, 16:34:42 UTC |
| e95959a | Berke Toptas | 21 November 2017, 16:32:27 UTC | As an optional parameter, variant trimming side priority is added as a parameter for --ref-overlap mode | 21 November 2017, 16:32:27 UTC |
| 39e18a8 | Berke Toptas | 21 November 2017, 13:54:20 UTC | Readme fixed | 21 November 2017, 13:54:20 UTC |
| b33d582 | Berke Toptas | 13 November 2017, 18:09:48 UTC | Doxygen Updated | 13 November 2017, 18:09:48 UTC |
| ebbbac9 | Berke Toptas | 13 November 2017, 16:53:42 UTC | readme updated | 13 November 2017, 16:53:42 UTC |
| 407e15f | Berke Toptas | 13 November 2017, 16:48:43 UTC | readme updated | 13 November 2017, 16:48:43 UTC |
| 45a2c70 | Berke Toptas | 13 November 2017, 16:46:14 UTC | ReadMe files modified. Minor bugs are solved | 13 November 2017, 16:46:14 UTC |
| 48b6437 | Berke Toptas | 13 November 2017, 15:52:23 UTC | compiler warnings are resolved | 13 November 2017, 15:52:23 UTC |
| b90d28d | Berke Toptas | 13 November 2017, 15:29:12 UTC | pros file commit | 13 November 2017, 15:29:12 UTC |
| 487e344 | Berke Toptas | 13 November 2017, 15:18:52 UTC | version is updated to v0.7.0 | 13 November 2017, 15:18:52 UTC |
| 1e9db68 | Berke Toptas | 13 November 2017, 15:17:31 UTC | GetSortedVariantList function name is changed | 13 November 2017, 15:17:31 UTC |
| 73bbc6c | Berke Toptas | 13 November 2017, 15:16:59 UTC | variants are sent as sorted to the vcf merger | 13 November 2017, 15:16:59 UTC |
| aab1199 | Berke Toptas | 13 November 2017, 15:16:24 UTC | GetSortedVariantListByIDandStartPos function is implemented for merging variant records stage | 13 November 2017, 15:16:24 UTC |
| 002a112 | Berke Toptas | 13 November 2017, 04:29:14 UTC | CVariantIterator cpp file is separated | 13 November 2017, 04:29:14 UTC |
| 77c2f45 | Berke Toptas | 13 November 2017, 03:25:08 UTC | FindBetter2 is removed, FindBestPath redundant else statements are removed | 13 November 2017, 03:25:08 UTC |
| 27f60cd | Berke Toptas | 13 November 2017, 03:12:38 UTC | colts are replaced with err when necessary | 13 November 2017, 03:12:38 UTC |
| fddea5c | Berke Toptas | 13 November 2017, 03:06:35 UTC | Commented out codes were removed | 13 November 2017, 03:06:35 UTC |
| 05634ee | Berke Toptas | 13 November 2017, 02:44:23 UTC | test code piece is removed | 13 November 2017, 02:44:23 UTC |
| 986d7d1 | Berke Toptas | 13 November 2017, 02:41:58 UTC | VBT v0.6.8 commit : - CMendelianTrioMerger is refactored(simplified) - CMendelianDecider parent variants mendelian decision assessments are rewritten | 13 November 2017, 02:41:58 UTC |
| 7eb400e | Berke Toptas | 13 November 2017, 02:39:29 UTC | htslib is mentioned as dependency | 13 November 2017, 02:39:29 UTC |
| e172147 | Berke Toptas | 08 November 2017, 15:19:17 UTC | AssignParentVarDecisions : no match variants that does not contain ref alleles are marked as violation directly | 08 November 2017, 15:19:17 UTC |
| 1524035 | Berke Toptas | 07 November 2017, 22:05:42 UTC | --generate-sync-point command description is added to help() | 07 November 2017, 22:05:42 UTC |
| 2f0c80a | Berke Toptas | 07 November 2017, 21:23:57 UTC | Graph comparison variant providers are updated regarding the BED parsing update | 07 November 2017, 21:23:57 UTC |
| e6b3186 | Berke Toptas | 07 November 2017, 21:21:20 UTC | CheckUniqueVars and AssignDecisionToParentVars functions are improved | 07 November 2017, 21:21:20 UTC |
| 895f11a | Berke Toptas | 07 November 2017, 21:19:51 UTC | Default thread count is set to 2 version number is updated | 07 November 2017, 21:19:51 UTC |
| 8445256 | Berke Toptas | 07 November 2017, 21:19:00 UTC | -Variant id increment problem is resolved -Early vcf parsing termination when BED regions are finished | 07 November 2017, 21:19:00 UTC |
| 60f6fa2 | Berke Toptas | 07 November 2017, 21:16:44 UTC | Total Contig count in BED region is calculated in order to use it for early termination of vcf parsing stage | 07 November 2017, 21:16:44 UTC |
| 468dc05 | Berke Toptas | 06 November 2017, 15:00:11 UTC | IsFileExist check added for vcfs print to standard outputs are removed | 06 November 2017, 15:00:11 UTC |
| a908744 | Berke Toptas | 03 November 2017, 18:06:32 UTC | Extra spaces are removed | 03 November 2017, 18:06:32 UTC |
| 99b9583 | Berke Toptas | 03 November 2017, 13:31:57 UTC | Smart variant trimming is added to Mendelian variant provider | 03 November 2017, 13:31:57 UTC |
