https://github.com/genome/genome
There are two similar command directories, but only one of them is included in `genome`.
- HEAD
- refs/for/master
- refs/heads/chrisamiller-patch-1
- refs/heads/cle
- refs/heads/cle-snapshot
- refs/heads/cle-staging
- refs/heads/cram
- refs/heads/cwltool-path
- refs/heads/gms-pub
- refs/heads/gms-pub-2015.02.22
- refs/heads/gms-pub-2015.03.04
- refs/heads/gms-pub-before-plos-merge-from-master
- refs/heads/gotcloud
- refs/heads/master
- refs/heads/mcallawa_trusty
- refs/heads/model-tests
- refs/heads/model-tests-for-lsf9
- refs/heads/perl-tests
- refs/heads/revert-606-gmt_picard_typos
- refs/heads/snapshot
- refs/tags/AP-103
- refs/tags/genome-3177
- refs/tags/genome-3178
- refs/tags/genome-3179
- refs/tags/genome-3180
- refs/tags/genome-3181
- refs/tags/genome-3182
- refs/tags/genome-3183
- refs/tags/genome-3184
- refs/tags/genome-3185
- refs/tags/genome-3186
- refs/tags/genome-3187
- refs/tags/genome-3188
- refs/tags/genome-3189
- refs/tags/genome-3190
- refs/tags/genome-3191
- refs/tags/genome-3192
- refs/tags/genome-3194
- refs/tags/genome-3196
- refs/tags/genome-3197
- refs/tags/genome-3198
- refs/tags/genome-3199
- refs/tags/genome-3200
- refs/tags/genome-3201
- refs/tags/genome-3202
- refs/tags/genome-3203
- refs/tags/genome-3204
- refs/tags/genome-3206
- refs/tags/genome-3207
- refs/tags/genome-3209
- refs/tags/genome-3210
- refs/tags/genome-3211
- refs/tags/genome-3212
- refs/tags/genome-3214
- refs/tags/genome-3215
- refs/tags/genome-3216
- refs/tags/genome-3217
- refs/tags/genome-3218
- refs/tags/genome-3219
- refs/tags/genome-3220
- refs/tags/genome-3221
- refs/tags/genome-3222
- refs/tags/genome-3223
- refs/tags/genome-3224
- refs/tags/genome-3225
- refs/tags/genome-3226
- refs/tags/genome-3227
- refs/tags/genome-3228
- refs/tags/genome-3229
- refs/tags/genome-3230
- refs/tags/genome-3231
- refs/tags/genome-3232
- refs/tags/genome-3233
- refs/tags/genome-3234
- refs/tags/genome-3235
- refs/tags/genome-3236
- refs/tags/genome-3237
- refs/tags/genome-3238
- refs/tags/genome-3239
- refs/tags/genome-3240
- refs/tags/genome-3241
- refs/tags/genome-3242
- refs/tags/genome-3243
- refs/tags/genome-3244
- refs/tags/genome-3245
- refs/tags/genome-3246
- refs/tags/genome-3247
- refs/tags/genome-3248
- refs/tags/genome-3249
- refs/tags/genome-3250
- refs/tags/genome-3253
- refs/tags/genome-3254
- refs/tags/genome-3255
- refs/tags/genome-3257
- refs/tags/genome-3258
- refs/tags/genome-3259
- refs/tags/genome-3260
- refs/tags/genome-3261
- refs/tags/genome-3262
- refs/tags/genome-3263
- refs/tags/genome-3264
- refs/tags/genome-3265
- refs/tags/genome-3266
- refs/tags/genome-3267
- refs/tags/genome-3268
- refs/tags/genome-3269
- refs/tags/genome-3270
- refs/tags/genome-3272
- refs/tags/genome-3273
- refs/tags/genome-3274
- refs/tags/genome-3275
- refs/tags/genome-3276
- refs/tags/genome-3278
- refs/tags/genome-3279
- refs/tags/genome-3280
- refs/tags/genome-3281
- refs/tags/genome-3282
- refs/tags/genome-3283
- refs/tags/genome-3284
- refs/tags/genome-3285
- refs/tags/genome-3286
- refs/tags/genome-3287
- refs/tags/genome-3288
- refs/tags/genome-3289
- refs/tags/genome-3292
- refs/tags/genome-3293
- refs/tags/genome-3294
- refs/tags/genome-3295
- refs/tags/genome-3296
- refs/tags/genome-3297
- refs/tags/genome-3298
- refs/tags/genome-3299
- refs/tags/genome-3300
- refs/tags/genome-3301
- refs/tags/genome-3302
- refs/tags/genome-3303
- refs/tags/genome-3304
- refs/tags/genome-3305
- refs/tags/genome-3306
- refs/tags/genome-3307
- refs/tags/genome-3308
- refs/tags/genome-3309
- refs/tags/genome-3310
- refs/tags/genome-3311
- refs/tags/genome-3312
- refs/tags/genome-3313
- refs/tags/genome-3314
- refs/tags/genome-3315
- refs/tags/genome-3316
- refs/tags/genome-3317
- refs/tags/genome-3318
- refs/tags/genome-3319
- refs/tags/genome-3320
- refs/tags/genome-3321
- refs/tags/genome-3322
- refs/tags/genome-3323
- refs/tags/genome-3324
- refs/tags/genome-3325
- refs/tags/genome-3326
- refs/tags/genome-3327
- refs/tags/genome-3328
- refs/tags/genome-3329
- refs/tags/genome-3330
- refs/tags/genome-3331
- refs/tags/genome-3332
- refs/tags/genome-3333
- refs/tags/genome-3334
- refs/tags/genome-3335
- refs/tags/genome-3336
- refs/tags/genome-3337
- refs/tags/genome-3338
- refs/tags/genome-3339
- refs/tags/genome-3340
- refs/tags/genome-3341
- refs/tags/genome-3342
- refs/tags/genome-3343
- refs/tags/genome-3344
- refs/tags/genome-3345
- refs/tags/genome-3346
- refs/tags/genome-3347
- refs/tags/genome-3348
- refs/tags/genome-3349
- refs/tags/genome-3350
- refs/tags/genome-3351
- refs/tags/genome-3352
- refs/tags/genome-3353
- refs/tags/genome-3354
- refs/tags/genome-3355
- refs/tags/genome-3356
- refs/tags/genome-3357
- refs/tags/genome-3358
- refs/tags/genome-3359
- refs/tags/genome-3360
- refs/tags/genome-3361
- refs/tags/genome-3362
- refs/tags/genome-3363
- refs/tags/genome-3364
- refs/tags/genome-3365
- refs/tags/genome-3366
- refs/tags/genome-3367
- refs/tags/genome-3368
- refs/tags/genome-3369
- refs/tags/genome-3370
- refs/tags/genome-3371
- refs/tags/genome-3372
- refs/tags/genome-3373
- refs/tags/genome-3374
- refs/tags/genome-3375
- refs/tags/genome-3376
- refs/tags/genome-3377
- refs/tags/genome-3378
- refs/tags/genome-3379
- refs/tags/genome-3380
- refs/tags/genome-3381
- refs/tags/genome-3382
- refs/tags/genome-3383
- refs/tags/genome-3384
- refs/tags/genome-3385
- refs/tags/genome-3386
- refs/tags/genome-3387
- refs/tags/genome-3388
- refs/tags/genome-3389
- refs/tags/genome-3390
- refs/tags/genome-3391
- refs/tags/genome-3392
- refs/tags/genome-3393
- refs/tags/genome-3394
- refs/tags/genome-3395
- refs/tags/genome-3396
- refs/tags/genome-3397
- refs/tags/genome-3398
- refs/tags/genome-3399
- refs/tags/genome-3400
- refs/tags/genome-3401
- refs/tags/genome-3402
- refs/tags/genome-3403
- refs/tags/genome-3404
- refs/tags/genome-3405
- refs/tags/genome-3406
- refs/tags/genome-3407
- refs/tags/genome-3408
- refs/tags/genome-3409
- refs/tags/genome-3410
- refs/tags/genome-3411
- refs/tags/genome-3412
- refs/tags/genome-3413
- refs/tags/genome-3414
- refs/tags/genome-3415
- refs/tags/genome-3416
- refs/tags/genome-3417
- refs/tags/genome-3418
- refs/tags/genome-3419
- refs/tags/genome-3420
- refs/tags/genome-3421
- refs/tags/genome-3422
- refs/tags/genome-3423
- refs/tags/genome-3424
- refs/tags/genome-3425
- refs/tags/genome-3426
- refs/tags/genome-3427
- refs/tags/genome-3428
- refs/tags/genome-3429
- refs/tags/genome-3430
- refs/tags/genome-3431
- refs/tags/genome-3432
- refs/tags/genome-3433
- refs/tags/genome-3434
- refs/tags/genome-3435
- refs/tags/genome-3436
- refs/tags/genome-3437
- refs/tags/genome-3438
- refs/tags/genome-3439
- refs/tags/genome-3440
- refs/tags/genome-3441
- refs/tags/genome-3442
- refs/tags/genome-3443
- refs/tags/genome-3444
- refs/tags/genome-3445
- refs/tags/genome-3446
- refs/tags/genome-3447
- refs/tags/genome-3448
- refs/tags/genome-3449
- refs/tags/genome-3450
- refs/tags/genome-3451
- refs/tags/genome-3452
- refs/tags/genome-3453
- refs/tags/genome-3454
- refs/tags/genome-3455
- refs/tags/genome-3456
- refs/tags/genome-3457
- refs/tags/genome-3458
- refs/tags/genome-3459
- refs/tags/genome-3460
- refs/tags/genome-3461
- refs/tags/genome-3462
- refs/tags/genome-3463
- refs/tags/genome-3464
- refs/tags/genome-3465
- refs/tags/genome-3466
- refs/tags/genome-3467
- refs/tags/genome-3468
- refs/tags/genome-3469
- refs/tags/genome-3470
- refs/tags/genome-3471
- refs/tags/genome-3472
- refs/tags/genome-3473
- refs/tags/genome-3474
- refs/tags/genome-3475
- refs/tags/genome-3476
- refs/tags/genome-3477
- refs/tags/genome-3478
- refs/tags/genome-3479
- refs/tags/genome-3480
- refs/tags/genome-3481
- refs/tags/genome-3482
- refs/tags/genome-3483
- refs/tags/genome-3484
- refs/tags/genome-3485
- refs/tags/genome-3486
- refs/tags/genome-3487
- refs/tags/genome-3488
- refs/tags/genome-3489
- refs/tags/genome-3490
- refs/tags/genome-3491
- refs/tags/genome-3492
- refs/tags/genome-3493
- refs/tags/genome-3494
- refs/tags/genome-3495
- refs/tags/genome-3496
- refs/tags/genome-3497
- refs/tags/genome-3498
- refs/tags/genome-3499
- refs/tags/genome-3500
- refs/tags/genome-3501
- refs/tags/genome-3502
- refs/tags/genome-3503
- refs/tags/genome-3504
- refs/tags/genome-3505
- refs/tags/genome-3506
- refs/tags/genome-3507
- refs/tags/genome-3508
- refs/tags/genome-3509
- refs/tags/genome-3510
- refs/tags/genome-3511
- refs/tags/genome-3512
- refs/tags/genome-3513
- refs/tags/genome-3514
- refs/tags/genome-3515
- refs/tags/genome-3516
- refs/tags/genome-3517
- refs/tags/genome-3518
- refs/tags/genome-3519
- refs/tags/genome-3520
- refs/tags/genome-3521
- refs/tags/genome-3522
- refs/tags/genome-3523
- refs/tags/genome-3524
- refs/tags/genome-3525
- refs/tags/genome-3526
- refs/tags/genome-3527
- refs/tags/genome-3528
- refs/tags/genome-3529
- refs/tags/genome-3530
- refs/tags/genome-3531
- refs/tags/genome-3532
- refs/tags/genome-3533
- refs/tags/genome-3534
- refs/tags/genome-3535
- refs/tags/genome-3536
- refs/tags/genome-3537
- refs/tags/genome-3538
- refs/tags/genome-3539
- refs/tags/genome-3540
- refs/tags/genome-3541
- refs/tags/genome-3542
- refs/tags/genome-3543
- refs/tags/genome-3544
- refs/tags/genome-3545
- refs/tags/genome-3546
- refs/tags/genome-3547
- refs/tags/genome-3548
- refs/tags/genome-3549
- refs/tags/genome-3550
- refs/tags/genome-3551
- refs/tags/genome-3552
- refs/tags/genome-3553
- refs/tags/genome-3554
- refs/tags/genome-3555
- refs/tags/genome-3556
- refs/tags/genome-3557
- refs/tags/genome-3558
- refs/tags/genome-3559
- refs/tags/genome-3560
- refs/tags/genome-3561
- refs/tags/genome-3562
- refs/tags/genome-3563
- refs/tags/genome-3564
- refs/tags/genome-3565
- refs/tags/genome-3566
- refs/tags/genome-3567
- refs/tags/genome-3568
- refs/tags/genome-3569
- refs/tags/genome-3570
- refs/tags/genome-3571
- refs/tags/genome-3572
- refs/tags/genome-3573
- refs/tags/genome-3574
- refs/tags/genome-3575
- refs/tags/genome-3576
- refs/tags/genome-3577
- refs/tags/genome-3578
- refs/tags/genome-3579
- refs/tags/genome-3580
- refs/tags/genome-3581
- refs/tags/genome-3582
- refs/tags/genome-3583
- refs/tags/genome-3584
- refs/tags/genome-3585
- refs/tags/genome-3586
- refs/tags/genome-3587
- refs/tags/genome-3588
- refs/tags/genome-3589
- refs/tags/genome-3590
- refs/tags/genome-3591
- refs/tags/genome-3592
- refs/tags/genome-3593
- refs/tags/genome-3594
- refs/tags/genome-3595
- refs/tags/genome-3596
- refs/tags/genome-3597
- refs/tags/genome-3598
- refs/tags/genome-3599
- refs/tags/genome-3600
- refs/tags/genome-3601
- refs/tags/genome-3602
- refs/tags/genome-3603
- refs/tags/genome-3604
- refs/tags/genome-3605
- refs/tags/genome-3606
- refs/tags/genome-3607
- refs/tags/genome-3608
- refs/tags/genome-3609
- refs/tags/genome-3610
- refs/tags/genome-3611
- refs/tags/genome-3612
- refs/tags/genome-3613
- refs/tags/genome-3614
- refs/tags/genome-3615
- refs/tags/genome-3616
- refs/tags/genome-3617
- refs/tags/genome-3618
- refs/tags/genome-3619
- refs/tags/genome-3620
- refs/tags/genome-3621
- refs/tags/genome-3622
- refs/tags/genome-3623
- refs/tags/genome-3624
- refs/tags/genome-3625
- refs/tags/genome-3626
- refs/tags/genome-3627
- refs/tags/genome-3628
- refs/tags/genome-3629
- refs/tags/genome-3630
- refs/tags/genome-3631
- refs/tags/genome-3632
- refs/tags/genome-3633
- refs/tags/genome-3634
- refs/tags/genome-3635
- refs/tags/genome-3636
- refs/tags/genome-3637
- refs/tags/genome-3638
- refs/tags/genome-3639
- refs/tags/genome-3640
- refs/tags/genome-3641
- refs/tags/genome-3642
- refs/tags/genome-3643
- refs/tags/genome-3644
- refs/tags/genome-3645
- refs/tags/genome-3646
- refs/tags/genome-3647
- refs/tags/genome-3648
- refs/tags/genome-3649
- refs/tags/genome-3650
- refs/tags/genome-3651
- refs/tags/genome-3652
- refs/tags/genome-3653
- refs/tags/genome-3654
- refs/tags/genome-3655
- refs/tags/genome-3656
- refs/tags/genome-3657
- refs/tags/genome-3658
- refs/tags/genome-3659
- refs/tags/genome-3660
- refs/tags/genome-3661
- refs/tags/genome-3662
- refs/tags/genome-3663
- refs/tags/genome-3664
- refs/tags/genome-3665
- refs/tags/genome-3666
- refs/tags/genome-3667
- refs/tags/genome-3668
- refs/tags/genome-3669
- refs/tags/genome-3670
- refs/tags/genome-3671
- refs/tags/genome-3672
- refs/tags/genome-3673
- refs/tags/genome-3674
- refs/tags/genome-3675
- refs/tags/genome-3676
- refs/tags/genome-3677
- refs/tags/genome-3678
- refs/tags/genome-3679
- refs/tags/genome-3680
- refs/tags/genome-3681
- refs/tags/genome-3682
- refs/tags/genome-3683
- refs/tags/genome-3684
- refs/tags/genome-3685
- refs/tags/genome-3686
- refs/tags/genome-3687
- refs/tags/genome-3688
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- refs/tags/genome-3690
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- refs/tags/genome-3812
- refs/tags/genome-3813
- refs/tags/genome-3814
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Move new BAM <=> CRAM conversion commands for command-line use.
Computing file changes ...