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4eaf0dc Updated ChangeLog to r12826 08 September 2008, 19:18 UTC
b20f4d7 Updated version number 05 September 2008, 23:59 UTC
e28b097 Updated file NEWS for v3.0.3 05 September 2008, 23:37 UTC
912fb7e Merged revisions 12804 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r12804 | tan2 | 2008-09-04 13:18:53 -0700 (Thu, 04 Sep 2008) | 2 lines Fixed issue 158: incorrect E->control.fi_max with coor=1 ........ 05 September 2008, 20:25 UTC
91aba94 Merged revisions 12272-12276 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r12272 | tan2 | 2008-06-18 18:04:06 -0700 (Wed, 18 Jun 2008) | 6 lines Compute E->surf_det (top surface area, ie. surface jacobian, of an element) on a unit sphere. Use E->surf_det, instead of the surface jacobian returned by get_global_1d_shape_fn(), to expand spherical harmonics. The surface jacobian returned by get_global_1d_shape_fn() is defined at the top radius of the current mesh. When nprocz>1, the top radius is not the same as the outer radius of the sphere for processors. As a result, the spherical harmonics expansion gave incorrect result when nprocz>1 in the previous revisions. ........ r12273 | tan2 | 2008-06-18 18:05:12 -0700 (Wed, 18 Jun 2008) | 2 lines Send geoid arrays to vertical columns of processors. After this fix, the geoid output is the same for nprocz=1 and nprocz>1. ........ r12276 | tan2 | 2008-06-19 14:42:27 -0700 (Thu, 19 Jun 2008) | 2 lines Added debugging (but disabled) function for spherical harmonics expansion. ........ 05 September 2008, 19:46 UTC
e558725 Using firewall channel for the error to stop the code. Replaced MPI_COMM_WORLD by E->parallel.world. MPI_COMM_WORLD is the global communicator. E->parallel.world is the communicator for the current solver. These two are different in a coupled run. Before this fix, full-regional coupling will dead lock. Merged from trunk r12203,12207 19 June 2008, 23:19 UTC
e0c0a55 Checked the validity of input. Merged from trunk r12177. 19 June 2008, 23:10 UTC
e2ef7c3 Fixed typo in memory allocation procedure that led to core dump. Fixed the order of input arguments to match the manual. Merged from trunk r12062,12184,12279. 19 June 2008, 23:06 UTC
8d79f37 Close trace_log files when finalizing. Merged from trunk r11332. 19 June 2008, 23:02 UTC
d192381 Update ChangeLog upto r11290 07 March 2008, 19:48 UTC
d454520 Update NEWS and version number for v3.0.2 07 March 2008, 19:33 UTC
e62654f Merged revisions 11280 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r11280 | tan2 | 2008-02-27 17:03:50 -0800 (Wed, 27 Feb 2008) | 4 lines Removed artificial tolerance of empty elements. This greatly decreases the minimal number of tracers per element required for a given mesh. This fixed issue140. ........ 28 February 2008, 20:53 UTC
7951892 Merged revisions 11219 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r11219 | tan2 | 2008-02-20 17:01:09 -0800 (Wed, 20 Feb 2008) | 2 lines Fixed issue139. Bug for tracers near South pole. ........ 28 February 2008, 20:51 UTC
87c4530 Merged revisions 9216 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r9216 | tan2 | 2008-02-04 12:40:45 -0800 (Mon, 04 Feb 2008) | 7 lines Fixed a regression reported by Lydia Dicaprio. The initial temperature should be constructured in this order: 1. if tic_method=-1, read from velo files. 2. if lith_age=1, read/constructed from lith_age files. 3. otherwise, call {full,regional}_construct_tic_from_input() ........ 28 February 2008, 20:46 UTC
87e7a0a Fixing Issue131: Compilation error in CitcomS-3.0.1 HDF5 support Merged revisions 8893 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r8893 | tan2 | 2007-12-17 14:06:06 -0800 (Mon, 17 Dec 2007) | 1 line Fixed phase change width ........ 28 February 2008, 20:40 UTC
798eb0d Updated file ChangeLog to r8281. 12 November 2007, 23:03 UTC
c2f28aa Merged revisions 8173-8193,8198,8200,8203,8208-8211,8216-8225,8229-8234,8238-8240,8246-8274,8276-8280 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r8278 | tan2 | 2007-11-12 14:38:36 -0800 (Mon, 12 Nov 2007) | 1 line Added mishing header file to the makefile, also avoided compiling unused code. ........ r8279 | tan2 | 2007-11-12 14:42:56 -0800 (Mon, 12 Nov 2007) | 1 line Updated the version number and file NEWS ........ 12 November 2007, 22:50 UTC
4cab4ca Blocked revisions 8275 via svnmerge ........ r8275 | becker | 2007-11-11 12:37:22 -0800 (Sun, 11 Nov 2007) | 3 lines Synching with the new release, none of those changes should be relevant. ........ 12 November 2007, 22:49 UTC
0461d2e Merged revisions 8194-8245 via svnmerge from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk ........ r8194 | tan2 | 2007-10-30 14:49:58 -0700 (Tue, 30 Oct 2007) | 1 line Compute d(rho)/dr/rho from rho(r) ........ r8195 | tan2 | 2007-10-30 14:50:52 -0700 (Tue, 30 Oct 2007) | 1 line Fixed a bug in dimensionalizing density. Provided the formula of geoid calculation in the comments. Rearranged the order of functions. ........ r8196 | tan2 | 2007-10-30 14:53:50 -0700 (Tue, 30 Oct 2007) | 1 line A post-processing program to project geoid coefficents onto a regular (longitude, latitude) mesh ........ r8197 | tan2 | 2007-10-30 14:54:14 -0700 (Tue, 30 Oct 2007) | 1 line Added the C program project_geoid to the makefile ........ r8199 | tan2 | 2007-10-30 15:29:44 -0700 (Tue, 30 Oct 2007) | 1 line Minor modification ........ r8201 | tan2 | 2007-11-01 16:33:30 -0700 (Thu, 01 Nov 2007) | 1 line Print dv/v=dp/p=1.0 for the 1st Uzawa iteraion ........ r8202 | tan2 | 2007-11-01 16:33:50 -0700 (Thu, 01 Nov 2007) | 1 line Fixed an error in comment ........ r8204 | tan2 | 2007-11-05 17:03:35 -0800 (Mon, 05 Nov 2007) | 1 line Scaled topo with variable gravity. Fixed an error in comment. Rearranged computation. ........ r8205 | tan2 | 2007-11-05 17:03:55 -0800 (Mon, 05 Nov 2007) | 1 line Removed functions related sph. harm in lib/Regional_obsolete.c ........ r8206 | tan2 | 2007-11-05 17:04:20 -0800 (Mon, 05 Nov 2007) | 1 line Shrank the size of sph. harm arrays ........ r8207 | tan2 | 2007-11-05 17:04:43 -0800 (Mon, 05 Nov 2007) | 1 line Init'd some variables about vtk_io, which might be accessed with uninit'd values in output_finalize() ........ r8212 | tan2 | 2007-11-06 15:17:54 -0800 (Tue, 06 Nov 2007) | 1 line Fixed a few memory errors ........ r8213 | tan2 | 2007-11-06 15:18:12 -0800 (Tue, 06 Nov 2007) | 1 line Increase vlowstep to match the default value in pyre ........ r8214 | tan2 | 2007-11-06 15:18:35 -0800 (Tue, 06 Nov 2007) | 1 line Removed unused multigrid parameters ........ r8215 | tan2 | 2007-11-06 15:18:54 -0800 (Tue, 06 Nov 2007) | 1 line Added cgrad solver convergence parameters, increased buoyancy_ratio and lower the # of steps ........ r8226 | tan2 | 2007-11-07 11:51:56 -0800 (Wed, 07 Nov 2007) | 1 line Print a warning when matrix eqn solver not converging ........ r8227 | tan2 | 2007-11-07 11:52:17 -0800 (Wed, 07 Nov 2007) | 1 line Removed comp_el from default output, since it is not required for restart anymore. ........ r8228 | tan2 | 2007-11-07 11:52:39 -0800 (Wed, 07 Nov 2007) | 1 line Decreased the # of processors. This is the only way I can reproduce single-cell convection as in the manual. ........ r8235 | tan2 | 2007-11-08 11:18:26 -0800 (Thu, 08 Nov 2007) | 1 line Dereased the timestep size to reduce artifacts in advection ........ r8236 | tan2 | 2007-11-08 11:18:52 -0800 (Thu, 08 Nov 2007) | 1 line Update NEWS ........ r8237 | tan2 | 2007-11-08 11:19:12 -0800 (Thu, 08 Nov 2007) | 1 line Update the version number ........ r8241 | tan2 | 2007-11-08 13:17:14 -0800 (Thu, 08 Nov 2007) | 1 line Updated file ChangeLog to r8240 ........ r8242 | tan2 | 2007-11-08 13:36:55 -0800 (Thu, 08 Nov 2007) | 1 line Removed binary checkpoint files from makefile, as the file size is too big for distribution. ........ r8243 | tan2 | 2007-11-08 13:38:09 -0800 (Thu, 08 Nov 2007) | 1 line Updated file ChangeLog to r8242 ........ r8244 | tan2 | 2007-11-08 14:31:21 -0800 (Thu, 08 Nov 2007) | 1 line Replaced a system call by std C library remove() and disabled another system call (backup input file). Partially fixed issue130. All remaining system calls are in lib/Output_gzdir.c. ........ r8245 | tan2 | 2007-11-08 14:41:31 -0800 (Thu, 08 Nov 2007) | 1 line Updated file ChangeLog to r8244 ........ 08 November 2007, 23:28 UTC
a828fa9 Initialized merge tracking via "svnmerge" with revisions "1-8172" from svn+ssh://svn@geodynamics.org/cig/mc/3D/CitcomS/trunk 08 November 2007, 23:25 UTC
66cf530 Branch for v3.0 maintenance 22 October 2007, 20:59 UTC
8102449 Updated file ChangeLog to r8170 22 October 2007, 20:57 UTC
26c3d4a Updated NEWS 22 October 2007, 20:26 UTC
a05de44 Minor update 22 October 2007, 19:46 UTC
7823da3 Simpilify INSTALL 22 October 2007, 19:44 UTC
4832d3d Eliminated unnecessary computation 22 October 2007, 19:03 UTC
e8a9d98 Variable material properties in latent heat correction on adiabatic cooling 22 October 2007, 19:03 UTC
5b2e55b Added some comments 22 October 2007, 19:02 UTC
a27d3c6 Renamed control.width* -> control.inv_width* for clarity 19 October 2007, 19:24 UTC
88a2e23 Renamed coupler inventory: dimensional -> si_unit and transformational -> cartesian 18 October 2007, 18:53 UTC
f614f83 Minor change in the examples 17 October 2007, 22:44 UTC
25c9b53 Added comments on where C code is replaced by python code in Citcom.c 17 October 2007, 20:56 UTC
8d2bbbe Put the rest of r8111 back 17 October 2007, 20:55 UTC
9676e09 Fixed input diffusivity parameter in the examples, from r8111. 17 October 2007, 20:33 UTC
69e4ad8 Added back minor modification from r8111 17 October 2007, 20:32 UTC
7732890 Fixed a typo in the example 17 October 2007, 18:40 UTC
6a8e4b5 Fixed a bug in remove_rigid_rot() 17 October 2007, 18:36 UTC
93471fe Roll back r8111, reading velo files for init. temperature stays as tic_method=-1. Other changes in r8111 will be put back later. 17 October 2007, 18:35 UTC
1602d87 Fixed rigid rotation code bug. Added restart=2 option which will not use checkpoints, but tic_method=-1 style temperature input (formally realized via tic_method=-1, but this should be cleaner) fixed input diffusivity parameter in full example file. 13 October 2007, 19:07 UTC
334bd72 Turn off monitor_max_T in the test 12 October 2007, 20:24 UTC
fdf7f72 Boundary class is for regional model only, add a checking for it. 12 October 2007, 20:23 UTC
17b3276 Cookbook 9: nested solver coupling + coor_refine + tsolver tuning 11 October 2007, 01:23 UTC
0f0b81a Wiser now, commented in the E->fp output 11 October 2007, 00:03 UTC
4af480b Added coor=3 option for radial node spacing a la CitcomCU. Streamlined ggrd temperature init. Added file flush to heat flow output. 10 October 2007, 23:40 UTC
9c14928 Add an assertion 10 October 2007, 21:00 UTC
3c5bee2 Remove rigid body rotation from the velocity solution from global model. A input parameter 'solver.vsolver.remove_rigid_rotation', default to on, indicate whether to remove the rigid body rotation. For free-slip model, this parameter should be on. For model with imposed plate velocity, it is advised to turn off this parameter. 10 October 2007, 20:11 UTC
ee814bc Renamed excludeTop -> exclude_top, and excludeBottom -> exclude_bottom. (No other CitcomS parameter uses CamelCase.) Reworked the interaction of initial temperature and coupling. Created a new parameter exchange_initial_temperature. 05 October 2007, 20:02 UTC
b0f818a Strengthen the default convergence criterion for the 3rd iteration in compressible cg solver 05 October 2007, 20:00 UTC
72ad845 Disable a debugging output 05 October 2007, 19:58 UTC
4bcf0ad Add licence text to the multi-couplers 05 October 2007, 19:58 UTC
820d139 Turn off filter_temp by default since it's not in the energy equation 05 October 2007, 19:57 UTC
4e87245 Fxied material assignment bug in PDEPV (0 vs. 1 array issue...) 04 October 2007, 19:35 UTC
cc73a80 Updated the cookbook scripts 01 October 2007, 20:38 UTC
f4f2b13 Added Cookbook8 for compressible model + geoid + checkpoint + vsolver tuning 01 October 2007, 19:26 UTC
ae31e95 Fixed restart I/O bug in Output_gzdir. 28 September 2007, 23:36 UTC
e429e26 Added function prototype and fixed a few errors 27 September 2007, 19:33 UTC
a79e4a9 Shrink the size of checkpoint files 27 September 2007, 19:07 UTC
02acf94 Enable coor_refine for regional model, only radial coordinate is refined 27 September 2007, 19:07 UTC
e29d3c2 Fixed a bug in vtkio 25 September 2007, 19:40 UTC
f392355 Introducing choice of reference state: When solver.param.reference_state=0, the reference state is read from a file (solver.param.refstate_file) When solver.param.reference_state=1 (default), the reference state is calculated using Adams-Williamson equation of state. 25 September 2007, 01:31 UTC
4170440 Detect the presence of libz and enable ascii-gz at configure time 24 September 2007, 21:29 UTC
95c453f Comment out varialbe thermal conductivity. Removed unused struct members. 24 September 2007, 21:28 UTC
e4cd242 Multiply rho*cp to DT/dt 24 September 2007, 21:28 UTC
6a4ff8e Don't write to log file, since only rank-0 proc can access it 19 September 2007, 20:34 UTC
37b7dd0 Set default value for tracer/composition flags earlier 19 September 2007, 20:34 UTC
a3387ca Shrink the size of arrays 19 September 2007, 20:33 UTC
3488a3f Shrink the size of arrays 19 September 2007, 20:31 UTC
37e37f8 Fixed uninit'd heat flux and geoid arrays bugs, as reported by valgrind 19 September 2007, 20:30 UTC
dec899b Minor bug fix in Output_gzidir, output_heating function didn't work. 19 September 2007, 00:28 UTC
c89da81 Fixed a memory bug in checkpoint 18 September 2007, 23:08 UTC
995fff8 Setup composition for regional model 18 September 2007, 23:07 UTC
f23ffbf Fix for Issue129: "CitcomS configured without exchanger still links with -lExchanger". Also, use CIT_HEADER_MPI so that configuring --with-exchanger using MPICH2 works (see Issue14 and Issue57). 18 September 2007, 01:52 UTC
a2fd2a4 Generalized init. composition from neighbors for multi-component composition 17 September 2007, 20:30 UTC
c10e388 Using neighboring elements to determine the initial composition, if only a few elements are empty. 17 September 2007, 19:07 UTC
e1af673 Revert accidental commit in part of r7957 15 September 2007, 00:17 UTC
94cd779 Rearranged computation of latent heat and the test condition of phase change 14 September 2007, 23:39 UTC
fedce4a Added the contribution of latent heat to the diffusion term 14 September 2007, 23:11 UTC
ffe1a6f Replace abs() by fabs() 14 September 2007, 23:11 UTC
d4bc483 Consevert energy (sum of rho*cp*T) instead of temperature (sum of T) in the Lenardic filter, also fixed a long-standing bug (abs -> fabs) 14 September 2007, 23:10 UTC
d13bdd5 Changed the magic numbers (0.0 and 1.0) to const variables, reindent the code. 14 September 2007, 23:09 UTC
9189bab Comment out adiabatic temperature profile for now, since it is not used in the code. 13 September 2007, 22:36 UTC
fcd95c8 Fixed a problem when the input string is empty 12 September 2007, 19:24 UTC
249d790 Added heating file to optional output 12 September 2007, 19:24 UTC
cb39951 Keep the load vector intact in the bicg solver 12 September 2007, 19:24 UTC
0b02b96 Using drand48() instead of rand() to improve the quality of random tracers. Added some debugging output if the tracer count is low. 12 September 2007, 19:23 UTC
f8219a2 Add new input boolean parameter 'itracer_warnings'. Default to on. When it is off, the exit condition of tracer is relaxed. 12 September 2007, 19:22 UTC
6b934e2 Removed the test for F=0 load vector bug. The bug was fixed in r7940. 12 September 2007, 19:19 UTC
d6e4a43 Fixed tsolver. Fixed a bug in TMass and another in convert element # to nz. 07 September 2007, 22:53 UTC
0d53949 Fixed a few memory problems. Shrink the size of several arrays related to Stokes eqn. Moved jacobi() to Obsolete.c 05 September 2007, 22:35 UTC
7273549 Forgot to update surfacee_tem 05 September 2007, 22:21 UTC
c77dfd0 Set the min of 2nd strain rate invariant to 1e-16 to prevent infinite viscosity when SDEPV=on 05 September 2007, 22:20 UTC
681786d Init'd timestep variables 05 September 2007, 22:20 UTC
e3ccb79 Added test for F=0 load vector bug, moved open_qfiles to after set_elapsed time. 04 September 2007, 23:09 UTC
e3f6845 Forgot to update the makefile 29 August 2007, 23:50 UTC
4b3831f Removed unused velocity bc files 29 August 2007, 23:39 UTC
f0d9ebe Restructing the repository layout for CitcomS documentation 29 August 2007, 23:18 UTC
e06f544 Forgot to update r7902 29 August 2007, 20:55 UTC
3711a41 Replaced output_open() with output_open_mode() Append the log and time files if restarting 29 August 2007, 20:48 UTC
a981bca Minor fix 29 August 2007, 20:47 UTC
d1f0b86 Missed to merge one modification after the conflict. 29 August 2007, 01:46 UTC
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