https://github.com/genome/genome
If we have a previously_discovered_variations_build then there will be snv.hq.novel.tierX.v2.bed and snv.hq.previously_discovered.tierX.v2.bed files of which we want to annotate the novel ones only. If we don't have a previously_discovered_variations_build or we're annotating the lq variants then we need to look for bed files that look like snvs.lq.tierX.bed or snvs.hq.tierX.bed
- HEAD
- refs/for/master
- refs/heads/chrisamiller-patch-1
- refs/heads/cle
- refs/heads/cle-snapshot
- refs/heads/cle-staging
- refs/heads/cram
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- refs/heads/gms-pub
- refs/heads/gms-pub-2015.02.22
- refs/heads/gms-pub-2015.03.04
- refs/heads/gms-pub-before-plos-merge-from-master
- refs/heads/gotcloud
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- refs/heads/model-tests-for-lsf9
- refs/heads/perl-tests
- refs/heads/revert-606-gmt_picard_typos
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- 5178d78f12e57b01aebea128b356c9815736ee23
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Fix how we look for tiered bed files
File | Mode | Size |
---|---|---|
alignment_summary @ 8932081 | ||
bam-readcount @ c044123 | ||
bassovac @ 41b7bc4 | ||
bin | ||
breakdancer @ 8f07f3d | ||
cron @ 9bb5f1f | ||
fqgrep @ fe0206d | ||
genome-db-cosmic @ bdec904 | ||
genome-db-omim @ d9b949a | ||
genome-db-pfam @ e5acfb0 | ||
genome-music | ||
genome-music-testdata @ 860ea75 | ||
genome-snapshot-deps @ b8462fe | ||
genome-snapshot-testdata @ 72c0ded | ||
genome-sys-user | ||
genome-webserver | ||
genome-www | ||
getopt-complete @ 4094a60 | ||
gmt-sys-vmbuilder | ||
graphite @ 495c2b8 | ||
init | ||
jenkins @ 9fac041 | ||
joinx @ e83e763 | ||
lib | ||
pairoscope @ 91c203a | ||
scripts | ||
sff2fastq @ b815f97 | ||
somatic-sniper @ d736546 | ||
tgi-etc @ 08ba1a6 | ||
tigra @ 6fe6b74 | ||
tigra-sv @ 715dda8 | ||
ur @ 27e73cf | ||
varscan @ 83ae9d8 | ||
vendor | ||
workflow @ ca05ba8 | ||
.gitignore | -rw-r--r-- | 67 bytes |
.gitmodules | -rw-r--r-- | 7.9 KB |
LICENSE | -rw-r--r-- | 7.5 KB |
README | -rw-r--r-- | 154 bytes |
WHERE_TO_PUT_CODE | -rw-r--r-- | 2.4 KB |
create-c-project.sh | -rwxr-xr-x | 2.9 KB |
create-project | -rwxr-xr-x | 2.9 KB |
test-data-relocate-me | l--------- | 46 bytes |
Computing file changes ...