language: r
r:
#  - bioc-devel
  - bioc-release
# warnings_are_errors: true
sudo: false
cache: packages

services:
  - docker

addons:
  apt:
    packages:
      - libprotobuf-dev
      - libapparmor-dev
      - protobuf-compiler
      - libcurl4-openssl-dev

r_packages:
  - covr
  - data.table
  - ggplot2
  - testthat
  - knitr
  - rmarkdown

os:
  - linux
#  - osx

bioc_required: true
bioc_packages:
  - BiocCheck

# Set CXX1X for R-devel, as R-devel does not detect CXX1X support for gcc 4.6.3,
# see https://github.com/travis-ci/travis-ci/issues/6587
before_install:
  - R -e 'install.packages("devtools")'
  - R -e 'source("https://bioconductor.org/biocLite.R"); biocLite()'
  - if [[ "$TRAVIS_R_VERSION_STRING" = 'bioc-devel' ]]; then mkdir ~/.R && echo -e 'CXX1X=g++ -std=c++0x -g -O2 -fPIC\nCXX11=g++ -std=c++0x -g -O2 -fPIC' > ~/.R/Makevars; fi

after_script:
  - ls -lah
  - FILE=$(ls -1t *.tar.gz | head -n 1)
  - Rscript -e "library(BiocCheck); BiocCheck(\"${FILE}\")"
  - bash inst/test_js.sh
  - if [ "$TRAVIS_BRANCH" == "master" ]; then
    docker login -u="$DOCKER_USERNAME" -p="$DOCKER_PASSWORD";
    docker build -t dzenkova/phantasus inst/docker/latest/ ;
    docker push dzenkova/phantasus;
    fi
  - if [ "$TRAVIS_BRANCH" == "develop" ]; then
    docker login -u="$DOCKER_USERNAME" -p="$DOCKER_PASSWORD";
    docker build -t dzenkova/phantasus:develop inst/docker/develop/ ;
    docker push dzenkova/phantasus:develop;
    fi

after_success:
  - Rscript -e 'covr::codecov()'