To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Heritage persistent IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.
Ragout ====== Version: 0.1 beta Release date: 14 Jan 2014 ( ) ) _.(--"("""--.._ /, _..-----).._,\ | `'''-----'''` | \ / '. .' '--.....--' Description ----------- Ragout (Reference-Assisted Genome Ordering UTility) is a tool for assisted assembly using multiple references. It takes a short read assembly (a set of contigs), a set of related references and a corresponding phylogenetic tree and then assembles the contigs into scaffolds. The benefits of assembly with multiple references become significant, when those references have structural variations compared to the target genome. Even if each reference is structurally divergent, it is possible to assemble the target into the correct set of scaffolds. Enlarge your contigs with Ragout! The current version of Ragout is limited to genomes of bacterial size, but we are working on expanding it to mammalinan-scaled ones. Install ------- See *INSTALL.md* file. Usage ----- See *USAGE.md* file. Authors ------- - Mikhail Kolmogorov (St. Petersburg University of the Russian Academy of Sciences) - Son Pham (University of California, San Diego) Citation -------- - Mikhail Kolmogorov, Brian Raney, Benedict Paten, and Son Pham. "Complete Assembly of Common Bacterial Genomes Using Only Short Reads" (submitted to ISMB 2014) Contacts -------- Please report any bugs directly to the issue tracker of this project. Also, you can send your feedback at firstname.lastname@example.org Acknowledgements ---------------- The work was supported by V-P Foundation. Licence ------- The program is distributed under GNU GPL v2 license.
Computing file changes ...