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Revision Author Date Message Commit Date
54ec831 sibelia path fix 15 January 2014, 22:20:24 UTC
b0a0b5a small usage update 14 January 2014, 10:44:45 UTC
2e5adc7 install and usage 14 January 2014, 09:53:13 UTC
c700bcf readme 14 January 2014, 08:46:45 UTC
43b5052 optimization 04 January 2014, 14:37:47 UTC
a52dcb8 more accurate handling of known adjacencies 04 January 2014, 11:30:48 UTC
fac714c small fix 25 December 2013, 15:44:43 UTC
b9ad65b test script updated, new coord files 19 December 2013, 15:26:25 UTC
6a6951c bugfixes in assembly graph 11 December 2013, 14:17:17 UTC
313f6be examples fixed 09 December 2013, 17:58:22 UTC
ccf92fa small ifx 09 December 2013, 15:12:08 UTC
e2345a4 some logging 26 November 2013, 15:39:10 UTC
ab25327 more reliable parsers 26 November 2013, 13:40:46 UTC
db29c03 new dot parser + nucmer format fixes 21 November 2013, 12:31:54 UTC
d7ca7ca usage og known adjacencies 18 November 2013, 20:54:54 UTC
b178423 USAGE improved 18 November 2013, 14:04:20 UTC
0c5e62d new example 18 November 2013, 13:39:32 UTC
7ff9793 sankoff algorithm 18 November 2013, 13:30:30 UTC
c5e68c1 new script 18 November 2013, 11:16:35 UTC
3a9fa50 aureus config fix 18 November 2013, 11:14:53 UTC
9808b68 fixed example configs 12 November 2013, 13:14:42 UTC
a599a30 fixed huge phylogeny bugs 11 November 2013, 11:43:38 UTC
4cb0fea debug output 11 November 2013, 00:00:51 UTC
a020c19 debrujin refinement 07 November 2013, 14:05:09 UTC
e54c487 test script with multiple references 06 November 2013, 22:56:35 UTC
b190ee0 Python 2.6 minor. 06 November 2013, 21:32:28 UTC
1bca0a3 Usage minor. 06 November 2013, 21:18:21 UTC
f2c9868 Applying markdown to readme files. 06 November 2013, 21:17:33 UTC
5e574e7 README improvements. 06 November 2013, 21:16:20 UTC
7d6d083 Update USAGE 06 November 2013, 20:53:41 UTC
f627e95 small ifx 06 November 2013, 06:54:02 UTC
3efaa2e output dirs 05 November 2013, 19:47:36 UTC
e1a5b7f readme and examples added 05 November 2013, 19:45:23 UTC
ef9c7dd minor fix 04 November 2013, 21:51:37 UTC
eed23ae fasta output 04 November 2013, 21:48:47 UTC
9391e37 iterative 02 November 2013, 21:15:54 UTC
514db70 sibelia incorporated 02 November 2013, 10:39:43 UTC
3b1aacc it works with permutations 01 November 2013, 15:54:36 UTC
ecc22e8 continue refactoring 01 November 2013, 15:03:50 UTC
aa2d169 BG with permutations 31 October 2013, 20:20:11 UTC
abb3b63 new branch 31 October 2013, 16:02:29 UTC
23789cd slight refactoring 31 October 2013, 16:00:38 UTC
25d3aee Merge branch 'master' of github.com:fenderglass/refass 30 October 2013, 08:24:06 UTC
b54f17e minor change 30 October 2013, 08:23:59 UTC
9c6e26c refactoring 28 October 2013, 15:34:19 UTC
9214e85 Automatic testing 19 October 2013, 22:10:10 UTC
2c683c8 with debrujin refinement 17 October 2013, 13:45:12 UTC
b853b4e new iterative assembly 17 October 2013, 13:14:06 UTC
ac49d14 partitoning algorithms improved 07 October 2013, 17:47:42 UTC
5fe6d4c Super rearrangement simpulator 2000 06 October 2013, 15:41:03 UTC
0e89949 splitting genomes into blocks 04 October 2013, 15:25:26 UTC
c2a27d4 more fancy images 02 October 2013, 20:12:07 UTC
157f93f phylogeny incorporated 30 September 2013, 22:09:02 UTC
f3ec594 quick and dirty phylogeny 30 September 2013, 11:26:20 UTC
270c4d9 phylogenetic trees likelihood estimation 30 September 2013, 09:46:58 UTC
f6de2c5 matching graph partitioning 16 September 2013, 22:39:39 UTC
3e5d161 breakpoint graph refactoring 30 August 2013, 14:25:38 UTC
a13a487 something changed 29 August 2013, 11:44:22 UTC
4cb396a debrujin integration, interface changed 28 August 2013, 12:23:48 UTC
12a2258 bugfix and skipping missing blocks, when constructing bg 26 August 2013, 14:39:52 UTC
22d1a57 overlap graph building and checking 24 August 2013, 09:31:41 UTC
3d0c999 more accurate test (not automatical yet) 23 August 2013, 15:37:07 UTC
7115fa6 debrujin refinment 23 August 2013, 14:23:10 UTC
c14b05b started with debrujin graph 19 August 2013, 17:57:15 UTC
b829fb9 visualization improved 16 August 2013, 18:56:48 UTC
f1721a2 added substitution case 16 August 2013, 13:05:50 UTC
14ea6f1 test improved 16 August 2013, 09:50:43 UTC
9ae75ee tests added 15 August 2013, 11:31:30 UTC
9189246 refactoring 14 August 2013, 12:09:26 UTC
e1c9a79 case with 6 vertexes added 12 August 2013, 13:55:42 UTC
560f1ca graph structure recognition for indel case 09 August 2013, 14:42:44 UTC
97623f1 distance estimation improved, conventional chromosome numbers 09 August 2013, 12:01:10 UTC
0a228b4 more refactoring 09 August 2013, 10:20:39 UTC
176afe9 more refactoring 08 August 2013, 12:24:48 UTC
70cd366 trash removed 08 August 2013, 12:24:04 UTC
fedd170 refactoring, repo reorganisation 08 August 2013, 11:30:28 UTC
0124ed0 initial code for abyss graph 08 August 2013, 04:54:20 UTC
e34071f added test data 07 August 2013, 09:27:59 UTC
06697b6 estimation of distances between contigs 06 August 2013, 13:00:27 UTC
0ad2623 duplications removal 05 August 2013, 19:58:03 UTC
79abacb indel case 05 August 2013, 17:56:52 UTC
9563c3c fixed merging algorithm 05 August 2013, 09:46:47 UTC
0bcfd26 contigs orientation fixed 04 August 2013, 11:10:28 UTC
93ad178 initial commit 03 August 2013, 10:52:27 UTC
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