jobs:
- job: Windows_Build
  displayName: win_build
  timeoutInMinutes: 0
  pool:
    vmImage: 'windows-2019'
  steps:
  - script: |
      echo on
      curl -fsS -o c:\MSMpiSetup.exe https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe
      c:\MSMpiSetup.exe -unattend
      set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
    displayName: Update MS-MPI to version 10.1.2
  - script: |
      echo on
      curl -fsS -o c:\blackbox-1.7.2.zip https://www.multibugs.org/build/blackbox-1.7.2.zip
      7z x c:\blackbox-1.7.2.zip -y -oc:\blackbox
      curl -fsS -o c:\blackbox\bbscript.exe https://www.multibugs.org/build/bbscript.exe
    displayName: Install BlackBox
  - script: |
      echo on
      cd %BUILD_SOURCESDIRECTORY%
      call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars32.bat"
      rc -fo Win/Rsrc/Bugslogo.res Win/Rsrc/Bugslogo.rc
      cvtres -machine:ix86 -out:Bugslogo.obj Win/Rsrc/Bugslogo.res
      cl /EHsc MultiBUGS.cpp /link shell32.lib Bugslogo.obj /subsystem:windows /entry:mainCRTStartup
      c:\blackbox\bbscript.exe /USE %BUILD_SOURCESDIRECTORY% /PAR Developer/Make.odc
      c:\blackbox\bbscript.exe /USE %BUILD_SOURCESDIRECTORY% /PAR Developer/LinkingWindows.odc
      mkdir c:\MultiBUGS\Dynamic\Sym
      mkdir c:\MultiBUGS\Dynamic\Code
    displayName: Build MultiBUGS
  - task: PublishPipelineArtifact@0
    inputs:
      artifactName: 'MultiBUGS-Windows'
      targetPath: c:\MultiBUGS
- job: Windows_Tests
  displayName: win
  dependsOn: Windows_Build
  strategy:
    matrix:
      1ch_1w_main:
        CHAINS: '1'
        WORKERS: '1'
        SUITE: 'main'
      2ch_1w_main:
        CHAINS: '2'
        WORKERS: '1'
        SUITE: 'main'
      1ch_2w_main:
        CHAINS: '1'
        WORKERS: '2'
        SUITE: 'main'
      1ch_1w_other:
        CHAINS: '1'
        WORKERS: '1'
        SUITE: 'other'
      2ch_1w_other:
        CHAINS: '2'
        WORKERS: '1'
        SUITE: 'other'
      1ch_2w_other:
        CHAINS: '1'
        WORKERS: '2'
        SUITE: 'other'
  pool:
    vmImage: 'windows-2019'
  steps:
  - task: DownloadPipelineArtifact@0
    inputs:
      artifactName: 'MultiBUGS-Windows'
      targetPath: c:\MultiBUGS
  - script: |
      echo on
      curl -fsS -o c:\MSMpiSetup.exe https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe
      c:\MSMpiSetup.exe -unattend
      set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
    displayName: Update MS-MPI to version 10.1.2
  - script: |
      echo on
      set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
      Rscript.exe -e "Sys.setenv(TZ='GMT')" -e "install.packages(c(\"remotes\", \"xml2\"), repos=\"https://cloud.r-project.org\", type = \"binary\")" -e "remotes::install_github(c(\"MultiBUGS/R2MultiBUGS\", \"MultiBUGS/multibugstests\"))"
    displayName: Install R and required packages
  - script: |
      echo on
      set PATH=C:\Program Files\Microsoft MPI\Bin;C:\Program Files\R\R-3.5.1\bin\x64;%PATH%
      IF "%SUITE%"=="main" Rscript.exe -e "multibugstests:::bugs_examples_all(n.workers = %WORKERS%, n.chains = %CHAINS%, report = \"junit\", exclude = c(\"StVeit\", \"Sixcomp\", \"Curves\", \"Hald\"))"
      IF "%SUITE%"=="other" Rscript.exe -e "multibugstests:::bugs_examples_all(n.workers = %WORKERS%, n.chains = %CHAINS%, report = \"junit\", examples.dir = \"C:/MultiBUGS/Reliability/Examples/\")"
      IF "%SUITE%"=="other" Rscript.exe -e "multibugstests:::bugs_examples_all(n.workers = %WORKERS%, n.chains = %CHAINS%, report = \"junit\", examples.dir = \"C:/MultiBUGS/GeoBUGS/Examples/\", exclude = c(\"MVCAR\"))"
    displayName: Run tests
  - task: PublishTestResults@2
    inputs:
      testResultsFiles: 'C:\MultiBUGS\TESTS-*$(WORKERS)workers-$(CHAINS)chains.xml'
      mergeTestResults: true
      testRunTitle: 'Windows: $(WORKERS) workers; $(CHAINS) chains; $(SUITE)'
    condition: always()
    displayName: 'Publish test results'
- job: Linux_Build
  displayName: lin_build
  timeoutInMinutes: 0
  pool:
    vmImage: 'ubuntu-16.04'
  steps:
  - script: |
      sudo dpkg --add-architecture i386
      sudo apt-get -qq -y update
      sudo apt-get install libgtk2.0-0:i386 gtk2-engines:i386 gtk2-engines-murrine:i386 libcanberra-gtk-module:i386 gnome-icon-theme-full
      # mpich installs libmpich12 which supplies libmpich.so.12
      sudo apt-get install mpich:i386
      # for building MultiBUGS.cpp
      sudo apt-get install g++-multilib
    displayName: Install 32-bit MPICH, and 32-bit GTK libraries
  - script: |
      git clone https://github.com/bbcb/bbcp.git ${AGENT_HOMEDIRECTORY}/bbcb
      cd ${AGENT_HOMEDIRECTORY}/bbcb/BlackBox
      ./switch-target `uname -s` GUI
      ./build
    displayName: Install BlackBox
  - script: |
      cd ${BUILD_SOURCESDIRECTORY}
      # -s strips the binary of debug symbols to keep lintian happy
      g++ -m32 -s -o MultiBUGS MultiBUGS.cpp
      BBINSTALLDIR="${AGENT_HOMEDIRECTORY}/bbcb/BlackBox"
      Developer/BuildLinux | ${BBINSTALLDIR}/run-dev0
      cp -r ${BBINSTALLDIR}/Cons MultiBUGS-binary/
      mkdir -p MultiBUGS-binary/Bugs/Code
      mkdir -p MultiBUGS-binary/Compare/Code
      mkdir -p MultiBUGS-binary/Correl/Code
      mkdir -p MultiBUGS-binary/Dev/Code
      mkdir -p MultiBUGS-binary/Deviance/Code
      mkdir -p MultiBUGS-binary/Diff/Code
      mkdir -p MultiBUGS-binary/Doodle/Code
      mkdir -p MultiBUGS-binary/Dynamic/Code
      mkdir -p MultiBUGS-binary/Graph/Code
      mkdir -p MultiBUGS-binary/Html/Code
      mkdir -p MultiBUGS-binary/Maps/Code
      mkdir -p MultiBUGS-binary/Math/Code
      mkdir -p MultiBUGS-binary/Models/Code
      mkdir -p MultiBUGS-binary/Monitor/Code
      mkdir -p MultiBUGS-binary/Parallel/Code
      mkdir -p MultiBUGS-binary/Pharmaco/Code
      mkdir -p MultiBUGS-binary/PKBugs/Code
      mkdir -p MultiBUGS-binary/Plots/Code
      mkdir -p MultiBUGS-binary/Ranks/Code
      mkdir -p MultiBUGS-binary/Reliability/Code
      mkdir -p MultiBUGS-binary/Samples/Code
      mkdir -p MultiBUGS-binary/Spatial/Code
      mkdir -p MultiBUGS-binary/Summary/Code
      mkdir -p MultiBUGS-binary/Test/Code
      mkdir -p MultiBUGS-binary/Updater/Code
      mkdir -p MultiBUGS-binary/Form/Code
      mkdir -p MultiBUGS-binary/Host/Code
      mkdir -p MultiBUGS-binary/Lin/Code
      mkdir -p MultiBUGS-binary/Ole/Code
      mkdir -p MultiBUGS-binary/Std/Code
      mkdir -p MultiBUGS-binary/System/Code
      mkdir -p MultiBUGS-binary/Text/Code
      mkdir -p MultiBUGS-binary/Win/Code
      mkdir -p MultiBUGS-binary/Xhtml/Code
      mkdir -p MultiBUGS-binary/Dev2/Code
      mkdir -p MultiBUGS-binary/Gtk2/Code
      mkdir -p MultiBUGS-binary/Code
      mkdir -p MultiBUGS-binary/Cons
      cp -r ${BBINSTALLDIR}/Form/Code/*.ocf MultiBUGS-binary/Form/Code
      cp -r ${BBINSTALLDIR}/Host/Code/*.ocf MultiBUGS-binary/Host/Code
      #cp -r ${BBINSTALLDIR}/Lin/Code/*.ocf MultiBUGS-binary/Lin/Code
      #cp -r ${BBINSTALLDIR}/Ole/Code/*.ocf MultiBUGS-binary/Ole/Code
      cp -r ${BBINSTALLDIR}/Std/Code/*.ocf MultiBUGS-binary/Std/Code
      #cp -r ${BBINSTALLDIR}/System/Code/*.ocf MultiBUGS-binary/System/Code
      cp -r ${BBINSTALLDIR}/Text/Code/*.ocf MultiBUGS-binary/Text/Code
      #cp -r ${BBINSTALLDIR}/Win/Code/*.ocf MultiBUGS-binary/Win/Code
      cp -r ${BBINSTALLDIR}/Xhtml/Code/*.ocf MultiBUGS-binary/Xhtml/Code
      cp -r ${BBINSTALLDIR}/Dev2/Code/*.ocf MultiBUGS-binary/Dev2/Code
      cp -r ${BBINSTALLDIR}/Gtk2/Code/*.ocf MultiBUGS-binary/Gtk2/Code
      cp -r ${BBINSTALLDIR}/Code/*.ocf MultiBUGS-binary/Code
      cp -r ${BBINSTALLDIR}/Cons/Code/*.ocf MultiBUGS-binary/Cons/Code
      #cp -r Form/Code/*.ocf MultiBUGS-binary/Form/Code
      cp -r Host/Code/*.ocf MultiBUGS-binary/Host/Code
      #cp -r Lin/Code/*.ocf MultiBUGS-binary/Lin/Code
      #cp -r Ole/Code/*.ocf MultiBUGS-binary/Ole/Code
      cp -r Std/Code/*.ocf MultiBUGS-binary/Std/Code
      #cp -r System/Code/*.ocf MultiBUGS-binary/System/Code
      #cp -r Text/Code/*.ocf MultiBUGS-binary/Text/Code
      #cp -r Win/Code/*.ocf MultiBUGS-binary/Win/Code
      #cp -r Xhtml/Code/*.ocf MultiBUGS-binary/Xhtml/Code
      #cp -r Dev2/Code/*.ocf MultiBUGS-binary/Dev2/Code
      #cp -r Gtk2/Code/*.ocf MultiBUGS-binary/Gtk2/Code
      cp -r Code/*.ocf MultiBUGS-binary/Code
      #cp -r Cons/*.ocf MultiBUGS-binary/Cons
      cp -r Bugs/Code/*.ocf MultiBUGS-binary/Bugs/Code
      cp -r Compare/Code/*.ocf MultiBUGS-binary/Compare/Code
      cp -r Correl/Code/*.ocf MultiBUGS-binary/Correl/Code
      cp -r Dev/Code/*.ocf MultiBUGS-binary/Dev/Code
      cp -r Deviance/Code/*.ocf MultiBUGS-binary/Deviance/Code
      cp -r Diff/Code/*.ocf MultiBUGS-binary/Diff/Code
      cp -r Doodle/Code/*.ocf MultiBUGS-binary/Doodle/Code
      #cp -r Dynamic/Code/*.ocf MultiBUGS-binary/Dynamic/Code
      cp -r Graph/Code/*.ocf MultiBUGS-binary/Graph/Code
      #cp -r Html/Code/*.ocf MultiBUGS-binary/Html/Code
      cp -r Maps/Code/*.ocf MultiBUGS-binary/Maps/Code
      cp -r Math/Code/*.ocf MultiBUGS-binary/Math/Code
      cp -r Models/Code/*.ocf MultiBUGS-binary/Models/Code
      cp -r Monitor/Code/*.ocf MultiBUGS-binary/Monitor/Code
      cp -r Parallel/Code/*.ocf MultiBUGS-binary/Parallel/Code
      cp -r Pharmaco/Code/*.ocf MultiBUGS-binary/Pharmaco/Code
      cp -r PKBugs/Code/*.ocf MultiBUGS-binary/PKBugs/Code
      cp -r Plots/Code/*.ocf MultiBUGS-binary/Plots/Code
      cp -r Ranks/Code/*.ocf MultiBUGS-binary/Ranks/Code
      cp -r Reliability/Code/*.ocf MultiBUGS-binary/Reliability/Code
      cp -r Samples/Code/*.ocf MultiBUGS-binary/Samples/Code
      cp -r Spatial/Code/*.ocf MultiBUGS-binary/Spatial/Code
      cp -r Summary/Code/*.ocf MultiBUGS-binary/Summary/Code
      cp -r Test/Code/*.ocf MultiBUGS-binary/Test/Code
      cp -r Updater/Code/*.ocf MultiBUGS-binary/Updater/Code
      mkdir -p MultiBUGS-binary/Math/Sym
      mkdir -p MultiBUGS-binary/Graph/Sym
      mkdir -p MultiBUGS-binary/Dynamic/Sym
      mkdir -p MultiBUGS-binary/Sym
      cp Math/Sym/Func.osf MultiBUGS-binary/Math/Sym/Func.osf
      cp Graph/Sym/Logical.osf MultiBUGS-binary/Graph/Sym/Logical.osf
      cp Graph/Sym/Nodes.osf MultiBUGS-binary/Graph/Sym/Nodes.osf
      cp Graph/Sym/Rules.osf MultiBUGS-binary/Graph/Sym/Rules.osf
      cp Graph/Sym/Scalar.osf MultiBUGS-binary/Graph/Sym/Scalar.osf
      cp Graph/Sym/Stochastic.osf MultiBUGS-binary/Graph/Sym/Stochastic.osf
      #cp System/Sym/Math.osf MultiBUGS-binary/System/Sym/Math.osf
      #cp System/Sym/Stores.osf MultiBUGS-binary/System/Sym/Stores.osf
      #cp System/Sym/Stores64.osf MultiBUGS-binary/System/Sym/Stores64.osf
      cp ${BBINSTALLDIR}/Sym/Math.osf MultiBUGS-binary/Sym/Math.osf
      cp ${BBINSTALLDIR}/Sym/Stores.osf MultiBUGS-binary/Sym/Stores.osf
      cp ${BBINSTALLDIR}/Sym/Stores64.osf MultiBUGS-binary/Sym/Stores64.osf
      chmod +x MultiBUGS-binary/OpenBUGS
      chmod +x MultiBUGS-binary/MultiBUGS
      chmod +x MultiBUGS-binary/run-MultiBUGS
      rm MultiBUGS-binary/MultiBUGS.exe
      rm MultiBUGS-binary/libtaucs.dll
      cp --recursive MultiBUGS-binary multibugs
      tar --create --gzip --verbose --file=multibugs_2.0.tar.gz multibugs
    displayName: Build MultiBUGS
  - task: PublishPipelineArtifact@0
    inputs:
      artifactName: 'MultiBUGS-Linux'
      targetPath: $(Build.SourcesDirectory)/MultiBUGS-binary
  - task: PublishPipelineArtifact@0
    inputs:
      artifactName: 'multibugs_2.0.tar.gz'
      targetPath: $(Build.SourcesDirectory)/multibugs_2.0.tar.gz
  - script: |
      cd ${BUILD_SOURCESDIRECTORY}
      mv Developer/deb multibugs_2.0-1
      mkdir -p multibugs_2.0-1/usr/lib/
      mv MultiBUGS-binary multibugs_2.0-1/usr/lib/multibugs
      find multibugs_2.0-1/usr/lib/multibugs -type d -print0 | xargs -0 chmod 0755 
      gzip --no-name --best multibugs_2.0-1/usr/share/doc/multibugs/changelog
      gzip --no-name --best multibugs_2.0-1/usr/share/doc/multibugs/changelog.Debian
      chmod +x multibugs_2.0-1/usr/bin/multibugs
      chmod +x multibugs_2.0-1/usr/bin/multibugs-shortcut
      chmod +x multibugs_2.0-1/usr/lib/multibugs/Developer/BuildLinux
      fakeroot dpkg-deb --build multibugs_2.0-1
      ls -la
      sudo apt-get install lintian
      lintian multibugs_2.0-1.deb
    displayName: Create deb
  - task: PublishPipelineArtifact@0
    inputs:
      artifactName: 'multibugs_2.0-1'
      targetPath: $(Build.SourcesDirectory)/multibugs_2.0-1.deb
- job: Linux_Tests
  displayName: lin
  dependsOn: Linux_Build
  strategy:
    matrix:
      1ch_1w_main:
        CHAINS: '1'
        WORKERS: '1'
        MPI: 'apt'
        SUITE: 'main'
      2ch_1w_main:
        CHAINS: '2'
        WORKERS: '1'
        MPI: 'source'
        SUITE: 'main'
      1ch_2w_main:
        CHAINS: '1'
        WORKERS: '2'
        MPI: 'source'
        SUITE: 'main'
      1ch_1w_oth:
        CHAINS: '1'
        WORKERS: '1'
        MPI: 'apt'
        SUITE: 'other'
      2ch_1w_oth:
        CHAINS: '2'
        WORKERS: '1'
        MPI: 'source'
        SUITE: 'other'
      1ch_2w_oth:
        CHAINS: '1'
        WORKERS: '2'
        MPI: 'source'
        SUITE: 'other'
  timeoutInMinutes: 0
  pool:
    vmImage: 'ubuntu-16.04'
  steps:
  - task: DownloadPipelineArtifact@0
    inputs:
      artifactName: 'MultiBUGS-Linux'
      targetPath: $(Build.SourcesDirectory)/MultiBUGS-binary
  - script: |
      chmod +x $(Build.SourcesDirectory)/MultiBUGS-binary/MultiBUGS
      chmod +x $(Build.SourcesDirectory)/MultiBUGS-binary/OpenBUGS
      chmod +x $(Build.SourcesDirectory)/MultiBUGS-binary/run-MultiBUGS
    displayName: Set permissions for MultiBUGS
  - script: |
      sudo dpkg --add-architecture i386
      sudo add-apt-repository -y "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -sc)-cran35/"
      sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
      sudo apt-get -qq -y update
      sudo apt-get install r-base libgtk2.0-0:i386 gtk2-engines:i386 gtk2-engines-murrine:i386 libcanberra-gtk-module:i386 gnome-icon-theme-full
      sudo apt-get install r-base-dev
      sudo apt-get install g++-multilib
      # By default, R_LIBS_USERS is not set, so need to allow package installation to site-library
      sudo chmod o+w /usr/local/lib/R/site-library
      if [ "$MPI" == "apt" ]; then
        # mpich installs libmpich12 which supplies libmpich.so.12
        sudo apt-get install mpich:i386
      fi
      if [ "$MPI" == "source" ]; then
        sudo apt-get install -y software-properties-common curl
        MPICH_VERSION=3.3.2
        cd /tmp
        curl --retry 3 https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | tar xz
        cd mpich-${MPICH_VERSION}
        ./configure --enable-fast=all,O3 CC=gcc MPICHLIB_CFLAGS=-m32 --prefix=/usr --with-device=ch3:sock --disable-fortran --disable-cxx
        make -j 4
        sudo make install
        mpiexec --version
      fi
    displayName: Install R, 32-bit MPICH, and 32-bit GTK libraries
  - script: |
      Rscript -e "install.packages(c(\"remotes\", \"xml2\"), repos=\"https://packagemanager.rstudio.com/all/__linux__/xenial/latest\")" -e "remotes::install_github(c(\"MultiBUGS/R2MultiBUGS\", \"MultiBUGS/multibugstests\"))"
    displayName: Install required R packages
  - script: |
      mkdir -p /tmp/.X11-unix
      sudo chmod 1777 /tmp/.X11-unix
      sudo chown root /tmp/.X11-unix/
      Xvfb :99 -screen 0 1024x768x24 </dev/null &
      sleep 5
      export DISPLAY=":99"
      cd ${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary
      if [ "$SUITE" == "main" ]; then
        Rscript -e "multibugstests:::bugs_examples_all(dir = \"${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary/\", n.workers = ${WORKERS}, n.chains = ${CHAINS}, report = \"junit\", exclude = c(\"StVeit\", \"Sixcomp\", \"Curves\", \"Hald\"))"
      fi
      if [ "$SUITE" == "other" ]; then
        Rscript -e "multibugstests:::bugs_examples_all(dir = \"${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary/\", n.workers = ${WORKERS}, n.chains = ${CHAINS}, report = \"junit\", examples.dir = \"${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary/Reliability/Examples/\", exclude = c(\"InvGaussian\", \"WeibullShifted\"))"
        Rscript -e "multibugstests:::bugs_examples_all(dir = \"${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary/\", n.workers = ${WORKERS}, n.chains = ${CHAINS}, report = \"junit\", examples.dir = \"${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary/GeoBUGS/Examples/\", exclude = c(\"MVCAR\"))"
      fi
    #timeoutInMinutes: 5
    continueOnError: true
    displayName: Run tests
  - script: |
      cd ${BUILD_SOURCESDIRECTORY}/MultiBUGS-binary
      DISPLAY=:99 import -window root screenshot-${WORKERS}workers-${CHAINS}chains-${SUITE}.png
    condition: always()
    displayName: Take screenshot of final result
  - task: PublishPipelineArtifact@0
    inputs:
      artifactName: 'Linux screenshot: $(WORKERS) workers; $(CHAINS) chains; $(SUITE)'
      targetPath: '$(Build.SourcesDirectory)/MultiBUGS-binary/screenshot-$(WORKERS)workers-$(CHAINS)chains-$(SUITE).png'
    condition: always()
    displayName: Publish screenshot of final result
  - task: PublishTestResults@2
    inputs:
      testResultsFiles: '$(Build.SourcesDirectory)/MultiBUGS-binary/TESTS-*$(WORKERS)workers-$(CHAINS)chains.xml'
      mergeTestResults: true
      testRunTitle: 'Linux: $(WORKERS)workers; $(CHAINS)chains; $(SUITE)'
    condition: always()
    displayName: 'Publish test results'
schedules:
- cron: "0 0 * * *"
  displayName: Daily UTC midnight build
  branches:
    include:
    - master
  always: true