https://github.com/stamatak/standard-RAxML
Revision 5b1f6aae3f986438d4f0629fdae4439326fd9448 authored by stamatak on 04 March 2014, 16:56:04 UTC, committed by stamatak on 04 March 2014, 16:56:04 UTC
The tolerance is not hard-coded but a function of the LnL score now.
1 parent 6e8356e
Tip revision: 5b1f6aae3f986438d4f0629fdae4439326fd9448 authored by stamatak on 04 March 2014, 16:56:04 UTC
improved the error checking for the LnL tolerance in model parameter optimization routine.
improved the error checking for the LnL tolerance in model parameter optimization routine.
Tip revision: 5b1f6aa
| File | Mode | Size |
|---|---|---|
| manual | ||
| usefulScripts | ||
| Makefile.AVX.HYBRID.gcc | -rw-r--r-- | 2.2 KB |
| Makefile.AVX.MPI.gcc | -rw-r--r-- | 2.1 KB |
| Makefile.AVX.PTHREADS.gcc | -rw-r--r-- | 2.9 KB |
| Makefile.AVX.PTHREADS.mac | -rw-r--r-- | 2.9 KB |
| Makefile.AVX.gcc | -rw-r--r-- | 2.7 KB |
| Makefile.AVX.mac | -rw-r--r-- | 2.8 KB |
| Makefile.AVX2.HYBRID.gcc | -rw-r--r-- | 2.2 KB |
| Makefile.AVX2.MPI.gcc | -rw-r--r-- | 2.2 KB |
| Makefile.AVX2.PTHREADS.gcc | -rw-r--r-- | 2.9 KB |
| Makefile.AVX2.PTHREADS.mac | -rw-r--r-- | 2.9 KB |
| Makefile.AVX2.gcc | -rw-r--r-- | 2.8 KB |
| Makefile.AVX2.mac | -rw-r--r-- | 2.8 KB |
| Makefile.HYBRID.gcc | -rw-r--r-- | 2.0 KB |
| Makefile.MPI.gcc | -rw-r--r-- | 1.9 KB |
| Makefile.PTHREADS.gcc | -rw-r--r-- | 2.6 KB |
| Makefile.PTHREADS.mac | -rw-r--r-- | 2.6 KB |
| Makefile.QuartetMPI.gcc | -rw-r--r-- | 2.6 KB |
| Makefile.SSE3.HYBRID.gcc | -rw-r--r-- | 2.0 KB |
| Makefile.SSE3.MPI.gcc | -rw-r--r-- | 1.9 KB |
| Makefile.SSE3.PTHREADS.gcc | -rw-r--r-- | 2.7 KB |
| Makefile.SSE3.PTHREADS.mac | -rw-r--r-- | 2.7 KB |
| Makefile.SSE3.QuartetMPI.gcc | -rw-r--r-- | 2.6 KB |
| Makefile.SSE3.gcc | -rw-r--r-- | 2.6 KB |
| Makefile.SSE3.mac | -rw-r--r-- | 2.6 KB |
| Makefile.gcc | -rw-r--r-- | 2.5 KB |
| README | -rw-r--r-- | 1.9 KB |
| Release-Notes | -rw-r--r-- | 521 bytes |
| ancestralStates.c | -rw-r--r-- | 22.7 KB |
| avxLikelihood.c | -rw-r--r-- | 104.4 KB |
| axml.c | -rw-r--r-- | 345.7 KB |
| axml.h | -rw-r--r-- | 46.4 KB |
| bipartitionList.c | -rw-r--r-- | 136.7 KB |
| check_malloc.sh | -rwxr-xr-x | 367 bytes |
| classify.c | -rw-r--r-- | 51.1 KB |
| compiler.h | -rw-r--r-- | 875 bytes |
| eigen.c | -rw-r--r-- | 4.7 KB |
| evaluateGenericSpecial.c | -rw-r--r-- | 104.4 KB |
| evaluatePartialGenericSpecial.c | -rw-r--r-- | 34.3 KB |
| fastDNAparsimony.c | -rw-r--r-- | 59.2 KB |
| fastSearch.c | -rw-r--r-- | 33.9 KB |
| gcc.h | -rw-r--r-- | 1.6 KB |
| globalVariables.h | -rw-r--r-- | 9.7 KB |
| leaveDropping.c | -rw-r--r-- | 39.9 KB |
| ll_alloc.c | -rw-r--r-- | 105.5 KB |
| ll_asm.h | -rw-r--r-- | 5.9 KB |
| ll_list.h | -rw-r--r-- | 2.9 KB |
| makenewzGenericSpecial.c | -rw-r--r-- | 120.6 KB |
| mem_alloc.c | -rw-r--r-- | 3.0 KB |
| ming.h | -rw-r--r-- | 2.8 KB |
| models.c | -rw-r--r-- | 174.4 KB |
| multiple.c | -rw-r--r-- | 48.3 KB |
| newviewGenericSpecial.c | -rw-r--r-- | 222.7 KB |
| optimizeModel.c | -rw-r--r-- | 89.1 KB |
| parsePartitions.c | -rw-r--r-- | 41.6 KB |
| rapidBootstrap.c | -rw-r--r-- | 9.2 KB |
| rmq.h | -rw-r--r-- | 416 bytes |
| rmqs.c | -rw-r--r-- | 12.5 KB |
| rmqs.h | -rw-r--r-- | 2.0 KB |
| rogueEPA.c | -rw-r--r-- | 10.2 KB |
| searchAlgo.c | -rw-r--r-- | 37.0 KB |
| topologies.c | -rw-r--r-- | 17.1 KB |
| treeIO.c | -rw-r--r-- | 52.0 KB |
Computing file changes ...
