Revision 5dfe48ba8684b34080d95fa045be4282b8bdab08 authored by Harshitha on 16 March 2016, 19:50:35 UTC, committed by Harshitha on 16 March 2016, 19:50:35 UTC
Change-Id: I78ccaedcf3eea7e07b820ef4ae9ad8356ce11f88
1 parent b79547b
Sorter.cpp
/** \file Sorter.cpp
Implementation of the parallel sort.
\author originally Graeme Lufkin (gwl@u.washington.edu)
*/
#include <algorithm>
#include "Sorter.h"
using std::vector;
using std::list;
using std::set;
using namespace std;
using namespace SFC;
extern CProxy_TreePiece treeProxy;
/***************ORB Decomposition*****************/
/// @brief Start ORB decomposition
/// @param m message with bounding box of the simulation
///
/// Begins the ORB decomposition by calculating the initial split and
/// broadcasting to TreePiece::evaluateParticleCounts(). Particle
/// counts will be contributed to Sorter::collectORBCounts().
///
void Sorter::doORBDecomposition(CkReductionMsg* m){
float len=0.0,len2=0.0;
char dim;
double pos;
OrientedBox<float> box = *static_cast<OrientedBox<float> *>(m->getData());
delete m;
if(numChares == 1) { // No decomposition to do
treeProxy[0].initBeforeORBSend(0,0,0,sortingCallback,
CkCallback(CkIndex_Sorter::readytoSendORB(0), thishandle));
return;
}
ORBData single;
single.boundingBox = box;
//Find which is the longest dimension
len=box.greater_corner.x-box.lesser_corner.x;
dim=0;
if(len<0.0) { len = -len; }
len2=box.greater_corner.y-box.lesser_corner.y;
if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=1; }
len2=box.greater_corner.z-box.lesser_corner.z;
if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=2; }
if(box.lesser_corner[dim] <= box.greater_corner[dim]){
pos = box.lesser_corner[dim] + len/2;
}
else{
pos = box.greater_corner[dim] + len/2;
}
single.curLow = box.lesser_corner[dim];
single.curHigh = box.greater_corner[dim];
single.curDivision = pos;
single.curDim = dim;
orbData.clear();
orbData.push_back(single);
ORBSplittersMsg * splittersMsg = new (1,1) ORBSplittersMsg(1,CkCallback(CkIndex_Sorter::collectORBCounts(0), thishandle));
splittersMsg->pos[0] = pos;
splittersMsg->dim[0] = dim;
treeProxy.evaluateParticleCounts(splittersMsg);
}
/// Calculate candidate divisions for next level in the ORB
/// decomposition tree. If we have enough pieces, proceed to
/// sending particles.
void Sorter::finishPhase(CkReductionMsg *m){
float len=0.0,len2=0.0;
char dim;
double pos;
int i,listSize;
delete m;
std::list<ORBData>::iterator iter;
std::list<ORBData>::iterator iter2;
iter = orbData.begin();
listSize = orbData.size();
for(int i=0;i<listSize;i++){
ORBData first,second;
first.boundingBox.lesser_corner = (*iter).boundingBox.lesser_corner;
first.boundingBox.greater_corner = (*iter).boundingBox.greater_corner;
first.boundingBox.greater_corner[(*iter).curDim] = (*iter).curDivision;
second.boundingBox.lesser_corner = (*iter).boundingBox.lesser_corner;
second.boundingBox.lesser_corner[(*iter).curDim] = (*iter).curDivision;
second.boundingBox.greater_corner = (*iter).boundingBox.greater_corner;
//Find which is the longest dimension
OrientedBox<float> box1 = first.boundingBox;
OrientedBox<float> box2 = second.boundingBox;
len=box1.greater_corner.x-box1.lesser_corner.x;
dim=0;
CkAssert(len>=0.0);
//if(len<0.0) { len = -len; }
len2=box1.greater_corner.y-box1.lesser_corner.y;
CkAssert(len2>=0.0);
//if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=1; }
len2=box1.greater_corner.z-box1.lesser_corner.z;
CkAssert(len2>=0.0);
//if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=2; }
pos = box1.lesser_corner[dim] + len/2;
first.curLow = box1.lesser_corner[dim];
first.curHigh = box1.greater_corner[dim];
first.curDivision = pos;
first.curDim = dim;
len=box2.greater_corner.x-box2.lesser_corner.x;
dim=0;
CkAssert(len>=0.0);
//if(len<0.0) { len = -len; }
len2=box2.greater_corner.y-box2.lesser_corner.y;
CkAssert(len2>=0.0);
//if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=1; }
len2=box2.greater_corner.z-box2.lesser_corner.z;
CkAssert(len2>=0.0);
//if(len2<0.0) { len2 = -len2; }
if(len2>len) { len = len2; dim=2; }
pos = box2.lesser_corner[dim] + len/2;
second.curLow = box2.lesser_corner[dim];
second.curHigh = box2.greater_corner[dim];
second.curDivision = pos;
second.curDim = dim;
//Insert both the sub-divisions into the list and remove the bigger division
iter2 = orbData.insert(iter,first);
iter2 = orbData.insert(iter,second);
iter = orbData.erase(iter);
}
if(numChares == orbData.size()){ //Move data around
for(i=0;i<numChares;i++){
if(verbosity > 2) {
CkPrintf("%d has %d particles\n",i,binCounts[i]);
CkPrintf("%d has %d gas particles\n",i,binCountsGas[i]);
CkPrintf("%d has %d star particles\n",i,binCountsStar[i]);
}
treeProxy[i].initBeforeORBSend(binCounts[i], binCountsGas[i],
binCountsStar[i], sortingCallback,
CkCallback(CkIndex_Sorter::readytoSendORB(0), thishandle));
}
}
else{ //Send the next phase of splitters
ORBSplittersMsg *splittersMsg = new (orbData.size(),orbData.size()) ORBSplittersMsg(orbData.size(),CkCallback(CkIndex_Sorter::collectORBCounts(0), thishandle));
for(i=0,iter=orbData.begin();iter!=orbData.end();i++,iter++){
splittersMsg->pos[i] = (*iter).curDivision;
splittersMsg->dim[i] = (*iter).curDim;
}
treeProxy.evaluateParticleCounts(splittersMsg);
}
}
void Sorter::readytoSendORB(CkReductionMsg* m){
delete m;
/*
* Send information to DataManager, then broadcast to send particles.
*/
dm.acceptResponsibleIndex(&(*chareIDs.begin()), chareIDs.size(),
CkCallback(CkIndex_TreePiece::sendORBParticles(),
treeProxy));
}
/// @brief Collect particle counts from treepieces and send out new
/// splits.
/// @param m A message with the summed counts for the current ORB
/// splits.
///
/// If the counts are within the tolerances, call
/// TreePiece::finalizeBoundaries().
///
void Sorter::collectORBCounts(CkReductionMsg* m){
std::list<ORBData>::iterator iter;
int i;
numCounts = m->getSize() / (3*sizeof(int)); // three separate arrays for
// total, gas and stars
binCounts.resize(numCounts);
binCountsGas.resize(numCounts);
binCountsStar.resize(numCounts);
int* startCounts = static_cast<int *>(m->getData());
copy(startCounts, startCounts + numCounts, binCounts.begin());
copy(startCounts + numCounts, startCounts + 2*numCounts,
binCountsGas.begin());
copy(startCounts + 2*numCounts, startCounts + 3*numCounts,
binCountsStar.begin());
delete m;
CkAssert(numCounts == 2*orbData.size());
ORBSplittersMsg *splittersMsg;
float TOLER=0.05;
int doneCount=0;
for(i=0,iter=orbData.begin(); iter!=orbData.end(); i++,iter++){
if((binCounts[2*i+1]*(1-TOLER)<=binCounts[2*i]
&& binCounts[2*i]<=(1+TOLER)*binCounts[2*i+1])
|| (domainDecomposition == ORB_space_dec)){
doneCount++;
}
else{
if(binCounts[2*i] > binCounts[2*i+1]){
(*iter).curHigh = (*iter).curDivision;
(*iter).curDivision = ((*iter).curLow + (*iter).curHigh)/2;
}
else{
(*iter).curLow = (*iter).curDivision;
(*iter).curDivision = ((*iter).curLow + (*iter).curHigh)/2;
}
}
}
//Assuming that lesser corner is always smaller than greater corner
if(doneCount==orbData.size()){
splittersMsg = new (orbData.size(),orbData.size()) ORBSplittersMsg(orbData.size(),CkCallback(CkIndex_Sorter::finishPhase(0), thishandle));
for(i=0,iter=orbData.begin();iter!=orbData.end();i++,iter++){
splittersMsg->pos[i] = (*iter).curDivision;
splittersMsg->dim[i] = (*iter).curDim;
}
//finalize the boundaries in all the Treepieces
treeProxy.finalizeBoundaries(splittersMsg);
}
else{
splittersMsg = new (orbData.size(),orbData.size()) ORBSplittersMsg(orbData.size(),CkCallback(CkIndex_Sorter::collectORBCounts(0), thishandle));
for(i=0,iter=orbData.begin();iter!=orbData.end();i++,iter++){
splittersMsg->pos[i] = (*iter).curDivision;
splittersMsg->dim[i] = (*iter).curDim;
}
treeProxy.evaluateParticleCounts(splittersMsg);
}
}
/**
* \brief Overall start of domain decomposition
* @param dataManagerID ID of data manager group
* @param toler Tolerance within which to have the same number of particles
* @param cb Callback for when we are done.
* @param decompose Are we still deciding on decomposition?
*/
void Sorter::startSorting(const CkGroupID& dataManagerID,
const double toler, const CkCallback& cb, bool decompose) {
numChares = numTreePieces;
dm = CProxy_DataManager(dataManagerID);
tolerance = toler;
sorted = false;
sortingCallback = cb;
numIterations = 0;
//Changed for implementing OCT decomposition
Key delta;
Key k;
BinaryTreeNode *rt;
#ifdef REDUCTION_HELPER
// The reduction helper needs to know the number of pieces on each processor.
reductionHelperProxy.countTreePieces(CkCallbackResumeThread());
CProxy_ReductionHelper boundariesTargetProxy = reductionHelperProxy;
#else
CProxy_TreePiece boundariesTargetProxy = treeProxy;
#endif
decompTime = CmiWallTimer();
switch (domainDecomposition){
case SFC_dec:
case SFC_peano_dec:
case SFC_peano_dec_3D:
case SFC_peano_dec_2D:
numKeys = 0;
if (keyBoundaries.size() == 0) {
splitters.clear();
int nSplitters = 4*numChares + 1;
splitters.reserve(nSplitters);
delta = (lastPossibleKey - SFC::firstPossibleKey) / (nSplitters-1);
k = firstPossibleKey;
for(int i = 0; i < (nSplitters-1); i++, k += delta) {
if(k != firstPossibleKey)
k |= 7L; // Set bottom bits to avoid trees too deep
splitters.push_back(k);
}
splitters.push_back(lastPossibleKey);
}
else { // reuse the existing splitters from the previous decomposition
splitters.assign(keyBoundaries.begin(), keyBoundaries.end());
}
break;
case Oct_dec:
{
refineLevel = octRefineLevel;
rt = new BinaryTreeNode();
int numInitialBins = numInitDecompBins;
if (nodeKeys.size() == 0) {
nodeKeys.reserve(numInitialBins);
nodeKeys.resize(numInitialBins>>1, 0);
NodeKey *tmp = &(*nodeKeys.begin());
rt->getChunks(nodeKeys.size(),tmp);
}
delete rt;
activeNodes->clear();
tmpActiveNodes->clear();
numDecompRoots = nodeKeys.size();
if (decompRoots == NULL) {
decompRoots = new OctDecompNode[numDecompRoots];
for(int i = 0; i < nodeKeys.size(); i++){
decompRoots[i].key = nodeKeys[i];
//CkPrintf("init add %llu to activeNodes\n", decompRoots[i].key);
activeNodes->push_back(&decompRoots[i]);
}
}
else {
root->getLeafNodes(activeNodes);
}
//CkPrintf("Sorter: initially %d keys\n", activeNodes->length());
if(!joinThreshold) {
joinThreshold = particlesPerChare;
splitThreshold = (int)(joinThreshold * 1.5);
}
//Convert the Node Keys to the splitter keys which will be sent to histogram
convertNodesToSplitters();
break;
}
case ORB_dec:
case ORB_space_dec:
numKeys = 0;
treeProxy.initORBPieces(CkCallback(CkIndex_Sorter::doORBDecomposition(0), thishandle));
break;
default:
CkAbort("Invalid domain decomposition requested");
}
if(verbosity >= 3)
ckout << "Sorter: Initially have " << splitters.size() << " splitters" << endl;
//send out the first guesses to be evaluated
if((domainDecomposition!=ORB_dec) && (domainDecomposition!=ORB_space_dec)) {
if (decompose) {
// XXX: Optimizations available if sort has been done before!
//create initial evenly distributed guesses for splitter keys
keyBoundaries.clear();
accumulatedBinCounts.clear();
keyBoundaries.reserve(numChares + 1);
accumulatedBinCounts.reserve(numChares + 1);
keyBoundaries.push_back(firstPossibleKey);
} else {
//send out all the decided keys to get final bin counts
sorted = true;
}
std::vector<SFC::Key>* keys;
if(decompose || domainDecomposition == Oct_dec){
keys = &splitters;
}
else {
keys = &keyBoundaries;
}
boundariesTargetProxy.evaluateBoundaries(&(*keys->begin()), keys->size(), 0, CkCallback(CkIndex_Sorter::collectEvaluations(0), thishandle));
}
}
/**
* Given "numKeys" node keys ("nodeKeys"), convert these keys into splitters.
*/
void Sorter::convertNodesToSplitters(){
Key partKey;
splitters.clear();
splitters.reserve(nodeKeys.size() + 1);
//binCounts.reserve(nodeKeys.size());
const Key mask = Key(1) << KeyBits;
for(unsigned int i=0;i<nodeKeys.size();i++){
partKey=Key(nodeKeys[i]);
while(!(partKey & mask)){
partKey <<= 1;
}
partKey &= ~mask;
if(partKey != 0) partKey--;
splitters.push_back(partKey);
}
// Note: Splitters are guaranteed to be sorted.
// Even if nodeKeys are not completely sorted (see getChunks),
// by construction the left shifting will produce a sorted splitters vector
splitters.push_back(lastPossibleKey);
}
/**
* Given "num" node keys, create splitters for these selected nodekeys
* to refine the information within those nodes: each node in keys is
* divided a number of times that depends on "refineLevel". Returns a
* newly allocated Key array containing a concatenation of the
* splitter keys for each node to be refined for the histogramming phase.
*/
Key * Sorter::convertNodesToSplittersRefine(int num, NodeKey* keys){
Key partKey = Key(0);
Key *result = new Key[num * ((1<<refineLevel)+1)];
Key levelMask = Key(1) << KeyBits;
levelMask >>= refineLevel;
int idx = 0;
const Key mask = Key(1) << KeyBits;
for(unsigned int i=0;i<num;i++){
CkAssert(! (partKey & levelMask));
partKey=Key(keys[i]<<refineLevel);
//CkPrintf("convertRefine %llx -> ", keys[i]);
int shift = 0;
// find how much we need to shift each key (depend on the tree level of the key)
while (!(partKey<<shift & mask)) {
++shift;
}
partKey &= ~mask >> shift;
for (int j=0; j<=(1<<refineLevel); ++j) {
Key kResult = ((partKey+j) << shift);
if(kResult != 0) kResult--;
result[idx++] = kResult;
//CkPrintf("%llx,", kResult);
}
//CkPrintf("\n");
}
// Note: Splitters are guaranteed to be sorted.
// By construction the left shifting will produce a sorted splitters vector
return result;
}
void Sorter::collectEvaluations(CkReductionMsg* m) {
switch (domainDecomposition){
case SFC_dec:
case SFC_peano_dec:
case SFC_peano_dec_3D:
case SFC_peano_dec_2D:
collectEvaluationsSFC(m);
break;
case Oct_dec:
collectEvaluationsOct(m);
break;
case ORB_dec:
case ORB_space_dec:
CkAbort("ORB: We shouldn't have reached here");
break;
default:
CkAbort("Invalid domain decomposition requested");
}
}
/**
* Examine the counts for Oct decomposition and determine if further
* refining is needed. Call TreePiece::evaluateBoundaries if needed,
* else send the final keys to DataManager::acceptFinalKeys.
* Sorter::refineOctSplitting perfoms splits where needed.
*/
void Sorter::collectEvaluationsOct(CkReductionMsg* m) {
numIterations++;
numCounts = m->getSize() / sizeof(int64_t);
int64_t* startCounts = static_cast<int64_t *>(m->getData());
//call function which will balance the bin counts: define it in GenericTreeNode
//make it a templated function
//Pass the bincounts as well as the nodekeys
if (joinThreshold == 0) {
int64_t total_particles = std::accumulate(startCounts, startCounts+numCounts, 0);
joinThreshold = total_particles / (numTreePieces>>1);
splitThreshold = (int) (joinThreshold * 1.5);
}
if(verbosity>=3){
int i=0;
CkPrintf("Bin Counts in collect eval (%d):",numCounts);
for ( ; i<numCounts; i++) {
CkPrintf("%ld,",startCounts[i]);
}
CkPrintf("\n");
CkPrintf("Nodekeys:");
for(int j=0;j<nodeKeys.size();j++)
CkPrintf("%llx,",nodeKeys[j]);
CkPrintf("\n");
if (nodesOpened.size() > 0) {
CkPrintf("Nodes opened (%d):",nodesOpened.size());
for (int j=0;j<nodesOpened.size();j++)
CkPrintf("%llx,",nodesOpened[j]);
CkPrintf("\n");
}
}
double startTimer = CmiWallTimer();
bool histogram = refineOctSplitting(numCounts, startCounts);
traceUserBracketEvent(weightBalanceUE, startTimer, CmiWallTimer());
//CkPrintf("refineOctSplitting nodesOpened %d took %g s\n", nodesOpened.size(), CmiWallTimer()-startTimer);
delete m;
if(verbosity>=3){
CkPrintf("Nodekeys after (%d):",nodeKeys.size());
for(int i=0;i<nodeKeys.size();i++)
CkPrintf("%llx,",nodeKeys[i]);
CkPrintf("\n");
}
if(histogram){
refineLevel = octRefineLevel;
int arraySize = (1<<refineLevel)+1;
startTimer = CmiWallTimer();
Key *array = convertNodesToSplittersRefine(nodesOpened.size(),nodesOpened.getVec());
//CkPrintf("convertNodesToSplittersRefine elts %d took %g s\n", nodesOpened.size()*arraySize, CmiWallTimer()-startTimer);
#ifdef REDUCTION_HELPER
CProxy_ReductionHelper boundariesTargetProxy = reductionHelperProxy;
#else
CProxy_TreePiece boundariesTargetProxy = treeProxy;
#endif
boundariesTargetProxy.evaluateBoundaries(array, nodesOpened.size()*arraySize, 1<<refineLevel, CkCallback(CkIndex_Sorter::collectEvaluations(0), thishandle));
delete[] array;
}
else{
sorted=true;
splitters.clear();
if (root == NULL) {
// build a tree out of decompRoots
// requires numDecompRoots to be a power of OctDecompNode::maxNumChildren
CkVec<OctDecompNode*> *leaves = new CkVec<OctDecompNode*>;
root = new OctDecompNode;
root->key = 1;
int depth = 0;
for (int numLeaves = numDecompRoots; numLeaves > OctDecompNode::maxNumChildren; numLeaves /= OctDecompNode::maxNumChildren) {
depth++;
}
root->makeSubTree(depth, leaves);
// CkPrintf("num leaves: %d numDecompRoots: %d\n", leaves->length(), numDecompRoots);
for (unsigned int i = 0; i < leaves->length(); i++) {
(*leaves)[i]->nchildren = OctDecompNode::maxNumChildren;
(*leaves)[i]->children = new OctDecompNode[OctDecompNode::maxNumChildren];
for (int j = 0; j < OctDecompNode::maxNumChildren; j++) {
(*leaves)[i]->children[j] = decompRoots[i * OctDecompNode::maxNumChildren + j];
}
}
delete leaves;
}
// N.B. While "total" is not used, the buildCounts() method has
// necessary side effects.
int64_t total = root->buildCounts();
// CkPrintf("total number of particles: %ld\n", total);
do {
// Convert Oct domains to splitters, ensuring that we do not exceed
// the number of available TreePieces.
nodeKeys.clear();
binCounts.clear();
root->combine(joinThreshold, nodeKeys, binCounts);
if(binCounts.size() > numTreePieces) {
CkPrintf("bumping joinThreshold: %d, size: %d\n", joinThreshold,
binCounts.size());
joinThreshold = (int) (1.1*joinThreshold) + 1;
}
}
while(binCounts.size() > numTreePieces);
convertNodesToSplitters();
#if 0
CkPrintf("final splitters: ");
for(int i = 0; i < splitters.size(); i++){
CkPrintf("%llx,", splitters[i]);
}
CkPrintf("\n");
CkPrintf("final chares: ");
for(int i = 0; i < chareIDs.size(); i++){
CkPrintf("%d,", chareIDs[i]);
}
CkPrintf("\n");
CkPrintf("final counts: ");
int totalAccum = 0;
int maxPartCount = 0;
for(int i = 0; i < binCounts.size(); i++){
CkPrintf("%d,", binCounts[i]);
totalAccum += binCounts[i];
if (binCounts[i] > maxPartCount) {
maxPartCount = binCounts[i];
}
}
int avePartCount = totalAccum / binCounts.size();
int numSmallCount = 0;
for(int i = 0; i < binCounts.size(); i++){
if (binCounts[i] < 0.1 * avePartCount) {
numSmallCount++;
}
}
CkPrintf("\ntotal count: %d\n", totalAccum);
CkPrintf("average number of particles per tree piece: %d\n", avePartCount);
CkPrintf("number of tree pieces of size less than 10%% of average %d\n", numSmallCount);
CkPrintf("maximum tree piece size: %d\n", maxPartCount);
#endif
ckout << "Sorter: Histograms balanced after " << numIterations
<< " iterations. Using " << nodeKeys.size() << " chares." << endl;
//We have the splitters here because weight balancer didn't change any node keys
//We also have the final bin counts
if(binCounts.size() > numTreePieces){
CkPrintf("Need %d tree pieces, available %d\n", binCounts.size(), numTreePieces);
CkAbort("too few tree pieces\n");
}
/*
CkPrintf("Done decomp\n");
CkExit();
return;
*/
CkPrintf(" histogramming %g sec ... \n", CmiWallTimer()-decompTime);
dm.acceptFinalKeys(&(*splitters.begin()), &(*chareIDs.begin()), &(*binCounts.begin()), splitters.size(), sortingCallback);
numIterations = 0;
sorted = false;
return;
}
}
int OctDecompNode::maxNumChildren = 2;
int OctDecompNode::lgMaxNumChildren = 1;
void OctDecompNode::makeSubTree(int refineLevel, CkVec<OctDecompNode*> *active){
if(refineLevel == 0){
active->push_back(this);
//CkPrintf("push %llx into tmpActive\n", key);
return;
}
children = new OctDecompNode[maxNumChildren];
nchildren = maxNumChildren;
NodeKey childKey = (key << lgMaxNumChildren);
for(int i = 0; i < nchildren; i++){
children[i].key = childKey;
children[i].makeSubTree(refineLevel-1,active);
childKey++;
}
}
int64_t OctDecompNode::buildCounts() {
if (children == NULL) {
return nparticles;
}
else {
nparticles = 0;
for (int i = 0; i < nchildren; i++) {
nparticles += children[i].buildCounts();
}
return nparticles;
}
}
void OctDecompNode::combine(int joinThreshold, vector<NodeKey> &finalKeys, vector<uint64_t> &counts){
if(nparticles < joinThreshold || nchildren == 0){
finalKeys.push_back(key);
counts.push_back(nparticles);
deleteBeneath();
return;
}
for(int i = 0; i < nchildren; i++){
children[i].combine(joinThreshold, finalKeys, counts);
}
}
void OctDecompNode::deleteBeneath(){
if(nchildren == 0) return;
for(int i = 0; i < nchildren; i++){
children[i].deleteBeneath();
}
delete[] children;
children = NULL;
nchildren = 0;
}
void OctDecompNode::getLeafNodes(CkVec<OctDecompNode*> *activeNodes) {
if (nchildren == 0) {
activeNodes->push_back(this);
}
else {
for(int i = 0; i < nchildren; i++){
children[i].getLeafNodes(activeNodes);
}
}
}
/**
* This function uses nodeKeys as tree holding the current status of
* the decomposition. It modifies it to decide when it is time to join two nodes,
* or to split a node (meaning a TreePiece holding that part of the tree rooted
* at "node").
* As a consequence of this modification, "splitters" "chareIDs" and "binCounts"
* are updated accordingly to reflect the changes. If some node requires extra
* refinement, "nodesOpened" will be changed to reflect this request for more data.
* Returns true if more refinement is requested.
*/
bool Sorter::refineOctSplitting(int n, int64_t *count) {
CkAssert(activeNodes->length() == n);
nodesOpened.clear();
for(int i = 0; i < n; i++){
OctDecompNode *parent = (*activeNodes)[i];
parent->nparticles = count[i];
if(parent->nparticles > splitThreshold){
// create a subtree of depth 'refineLevel' underneath 'parent'
// newly created children are pushed into 'tmpActiveNodes'
// the key of the parent is placed in 'nodesOpened' so that we
// can make splitters out of the childrens' keys
parent->makeSubTree(refineLevel, tmpActiveNodes);
nodesOpened.push_back(parent->key);
}
}
CkVec<OctDecompNode*> *save = tmpActiveNodes;
tmpActiveNodes = activeNodes;
activeNodes = save;
tmpActiveNodes->length() = 0;
//CkPrintf("Sorter: refined to get %d keys\n", activeNodes->length());
return (nodesOpened.size() > 0);
}
/**
* \brief Collect evaluations for the SFC domain decomposion.
*
* Examines the bin counts to see if the iteration has converged. If
* yes, a final count is done and then sent to
* DataManager::acceptFinalKeys. If not, then Sorter::adjustSplitters
* is used to refine the search intervals.
*/
void Sorter::collectEvaluationsSFC(CkReductionMsg* m) {
numIterations++;
numCounts = m->getSize() / sizeof(int64_t);
binCounts.resize(numCounts + 1);
binCounts[0] = 0;
int64_t* startCounts = static_cast<int64_t *>(m->getData());
copy(startCounts, startCounts + numCounts, binCounts.begin() + 1);
delete m;
if (sorted) { // needed only when skipping decomposition
dm.acceptFinalKeys(&(*keyBoundaries.begin()), &(*chareIDs.begin()), &(*binCounts.begin()) + 1, keyBoundaries.size(), sortingCallback);
numIterations = 0;
sorted = false;
return;
}
if(verbosity >= 4)
ckout << "Sorter: On iteration " << numIterations << endl;
CkAssert(numIterations < 1000); // Sorter has not converged.
//sum up the individual bin counts, so each bin has the count of it and all preceding
partial_sum(binCounts.begin(), binCounts.end(), binCounts.begin());
if(!numKeys) {
numKeys = binCounts.back();
int avgValue = numKeys / numChares;
closeEnough = static_cast<int>(avgValue * tolerance);
if(closeEnough < 0 || closeEnough >= avgValue) {
ckerr << "Sorter: Unacceptable tolerance, requiring exact fit." << endl;
closeEnough = 0;
}
//each splitter key will split the keys near a goal number of keys
numGoalsPending = numChares - 1;
goals = new int64_t[numGoalsPending];
int rem = numKeys % numChares;
int64_t prev = 0;
// evenly distribute extra particles.
for (int i = 0; i < rem; i++) {
goals[i] = prev + avgValue + 1;
prev = goals[i];
}
for (int i = rem; i < numGoalsPending; i++) {
goals[i] = prev + avgValue;
prev = goals[i];
}
if(verbosity >= 3)
ckout << "Sorter: Target keys per chare: " << avgValue << " plus/minus " << (2 * closeEnough) << endl;
}
//make adjustments to the splitter keys based on the results of the previous iteration
adjustSplitters();
if(verbosity >= 4) {
ckout << "Sorter: Probing " << splitters.size() << " splitter keys" << endl;
ckout << "Sorter: Decided on " << (keyBoundaries.size() - 1) << " splitting keys" << endl;
}
//check if we have found all the splitters
if(sorted) {
if(verbosity)
ckout << "Sorter: Histograms balanced after " << numIterations << " iterations." << endl;
sort(keyBoundaries.begin() + 1, keyBoundaries.end());
keyBoundaries.push_back(lastPossibleKey);
accumulatedBinCounts.push_back(binCounts.back());
sort(accumulatedBinCounts.begin(), accumulatedBinCounts.end());
binCounts.resize(accumulatedBinCounts.size());
std::adjacent_difference(accumulatedBinCounts.begin(), accumulatedBinCounts.end(), binCounts.begin());
accumulatedBinCounts.clear();
//send out the final splitters and responsibility table
dm.acceptFinalKeys(&(*keyBoundaries.begin()), &(*chareIDs.begin()), &(*binCounts.begin()), keyBoundaries.size(), sortingCallback);
numIterations = 0;
sorted = false;
} else {
//send out the new guesses to be evaluated
#ifdef REDUCTION_HELPER
CProxy_ReductionHelper boundariesTargetProxy = reductionHelperProxy;
boundariesTargetProxy.evaluateBoundaries(binsToSplit, CkCallback(CkIndex_Sorter::collectEvaluations(0), thishandle));
#else
CProxy_TreePiece boundariesTargetProxy = treeProxy;
boundariesTargetProxy.evaluateBoundaries(&splitters[0], splitters.size(), 0, CkCallback(CkIndex_Sorter::collectEvaluations(0), thishandle));
#endif
}
}
/** Generate new guesses for splitter keys based on the histograms that came
back from the last batch.
We need to find the keys that split a distribution into even piles.
We find the bracketing splits, and then insert a new guess in the
middle for a new evaluation. This is a simultaneous bisection search
for each splitter key not yet found.
*/
void Sorter::adjustSplitters() {
std::vector<SFC::Key> newSplitters;
binsToSplit.Resize(splitters.size() -1 );
binsToSplit.Zero();
newSplitters.reserve(splitters.size() * 4);
newSplitters.push_back(firstPossibleKey);
Key leftBound, rightBound;
vector<uint64_t>::iterator numLeftKey, numRightKey = binCounts.begin();
int numActiveGoals = 0;
//for each goal not yet met (each splitter key not yet found)
for(int i = 0; i < numGoalsPending; i++) {
//find the positions that bracket the goal
numRightKey = lower_bound(numRightKey, binCounts.end(), goals[i]);
numLeftKey = numRightKey - 1;
if(numRightKey == binCounts.begin())
ckerr << "Sorter: Looking for " << goals[i] << " How could this happen at the beginning?" << endl;
if(numRightKey == binCounts.end())
ckerr << "Sorter: Looking for " << goals[i] << " How could this happen at the end?" << endl;
//translate the positions into the bracketing keys
leftBound = splitters[numLeftKey - binCounts.begin()];
rightBound = splitters[numRightKey - binCounts.begin()];
//check if one of the bracketing keys is close enough to the goal
if(abs((int64_t)*numLeftKey - goals[i]) <= closeEnough) {
//add this key to the list of decided splitter keys
keyBoundaries.push_back(leftBound);
accumulatedBinCounts.push_back(*numLeftKey);
} else if(abs((int64_t)*numRightKey - goals[i]) <= closeEnough) {
keyBoundaries.push_back(rightBound);
accumulatedBinCounts.push_back(*numRightKey);
} else {
// not close enough yet, add the bracketing keys and
// the middle to the guesses
// Set bottom bits to avoid trees to deep.
if (newSplitters.back() != (rightBound | 7L) ) {
if (newSplitters.back() != (leftBound | 7L)) {
newSplitters.push_back(leftBound | 7L);
}
newSplitters.push_back((leftBound / 4 * 3 + rightBound / 4) | 7L);
newSplitters.push_back((leftBound / 2 + rightBound / 2) | 7L);
newSplitters.push_back((leftBound / 4 + rightBound / 4 * 3) | 7L);
newSplitters.push_back(rightBound | 7L);
}
goals[numActiveGoals++] = goals[i];
binsToSplit.Set(numLeftKey - binCounts.begin());
}
}
numGoalsPending = numActiveGoals;
if(numGoalsPending == 0) {
sorted = true;
delete [] goals;
}
else {
if (newSplitters.back() != lastPossibleKey) {
newSplitters.push_back(lastPossibleKey);
}
splitters.reserve(newSplitters.size());
splitters.assign(newSplitters.begin(), newSplitters.end());
if(verbosity >=4 ) {
CkPrintf("Keys:");
for (std::vector<Key>::iterator it = splitters.begin(); it < splitters.end(); it++) {
CkPrintf("%lx,", *it);
}
CkPrintf("\n");
}
}
}
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