Revision 5eda18f5008154909e101a5ba98b2c6e97115b23 authored by Tadgh on 30 July 2023, 22:28:26 UTC, committed by GitHub on 30 July 2023, 22:28:26 UTC
* version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * Rename file to force IT mode --------- Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com>
1 parent 2b91f0a
sync_ri21.sh
#!/bin/sh
set -e
FHIRTRUNK=~/workspace/fhir/trunk
DIRVERSION=dstu21
PROJVERSION=dstu2.1
PACKAGEVERSION=dstu21
# Resource Definitions
rm hapi-tinder-plugin/src/main/resources/res/$DIRVERSION/*
for i in $(find $FHIRTRUNK/build/source -name *-spreadsheet.xml | egrep "/[a-z0-9]+-spreadsheet"); do cp -v $i hapi-tinder-plugin/src/main/resources/res/$DIRVERSION/; done
# Datatype Definitions
rm hapi-tinder-plugin/src/main/resources/dt/$DIRVERSION/*
for i in $(find $FHIRTRUNK/build/source/datatypes | grep xml | grep -v spreadsheet | grep -v -); do cp -v $i hapi-tinder-plugin/src/main/resources/dt/$DIRVERSION/; done
# Compartments
cp ~/workspace/fhir/trunk/build/source/compartments.xml hapi-tinder-plugin/src/main/resources/compartment/
# ValueSets
cp $FHIRTRUNK/build/publish/valuesets.xml hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/valueset/
cp $FHIRTRUNK/build/publish/v3-codesystems.xml hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/valueset/
cp $FHIRTRUNK/build/publish/v2-tables.xml hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/valueset/
# Profiles
touch ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/profile/_.xml
rm ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/profile/*.xml
for i in $(find $FHIRTRUNK/build/publish | grep -E "publish\/[a-z]+\.profile.xml$"); do echo $i; cp $i hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/profile/; done
# Schematron
touch hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/a.sch
rm hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/*.sch
for i in $(ls $FHIRTRUNK/build/publish/*.sch | grep -v -); do cp -v $i ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/; done
# Schema
cp $FHIRTRUNK/build/publish/fhir-single.xsd ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/
cp $FHIRTRUNK/build/publish/fhir-xhtml.xsd ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/
cp $FHIRTRUNK/build/publish/xml.xsd ./hapi-fhir-validation-resources-$PROJVERSION/src/main/resources/org/hl7/fhir/instance/model/$PACKAGEVERSION/schema/
# Copy Model
#TODO reenable
cp -fvR $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/model/*.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/model/
#find hapi-fhir-structures-$PROJVERSION/src -name "*.class" | xargs rm -v
# Exception class
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/exceptions/FHIRException.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/exceptions/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/exceptions/FHIRFormatError.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/exceptions/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/Utilities.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/CSFile.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/MyURIResolver.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/ZipURIResolver.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/Inflector.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/FileNotifier.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities
#cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/XhtmlNode.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xhtml/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/XhtmlDocument.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xhtml/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/NodeType.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xhtml/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/XhtmlParser.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xhtml/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/XhtmlComposer.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xhtml/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/Table.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/CommaSeparatedStringBuilder.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xml/XMLUtil.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xml/
# Formats
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/formats/IParser.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/formats/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/formats/ParserType.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/formats/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/formats/FormatUtilities.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/formats/
# Terminologies
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/terminologies/ValueSetExpander.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/terminologies/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/terminologies/ValueSetChecker.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/terminologies/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/terminologies/ValueSetExpanderSimple.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/terminologies/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/terminologies/ValueSetExpanderFactory.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/terminologies/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/terminologies/ValueSetCheckerSimple.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/terminologies/
# Utils
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/utils/ToolingExtensions.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/utils/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/utils/IWorkerContext.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/utils/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/utils/INarrativeGenerator.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/utils/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/utils/EOperationOutcome.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/utils/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/utils/FHIRPathEngine.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/utils/
# Validation
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/validation/* hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/validation/
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.$PACKAGEVERSION/src/org/hl7/fhir/$PACKAGEVERSION/exceptions/* hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/exceptions/
rm hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/validation/Validator.java
rm hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/validation/ValidationEngine.java
rm hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/validation/ProfileValidator.java
rm hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/$PACKAGEVERSION/validation/ProfileValidatorTests.java
# XML
cp $FHIRTRUNK/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xml/IXMLWriter.java hapi-fhir-structures-$PROJVERSION/src/main/java/org/hl7/fhir/utilities/xml/
![swh spinner](/static/img/swh-spinner.gif)
Computing file changes ...